RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 ZBTB38Q8NAP3 1195 aaPredicted RBP10.09□□□□□ -0.79
DEPDC4-207ENST00000549249 GCC1Q96CN9 775 aa10.09□□□□□ -0.79
DEPDC4-207ENST00000549249 CDHR2Q9BYE9 1310 aa10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 HMMRO75330 724 aa10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 NTSR2O95665 410 aa10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 PDE4AP27815 886 aa10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 SSFA2P28290 1259 aa10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 TBC1D9BQ66K14 1250 aa10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 FAM89AQ96GI7 184 aa10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 RYDENQ9NUL5 291 aaKnown RBP10.08□□□□□ -0.8
DEPDC4-207ENST00000549249 SRGAP3O43295 1099 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 RFX5P48382 616 aaPredicted RBP10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 NUCB1Q02818 461 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 PARP10Q53GL7 1025 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 TRAPPC3LQ5T215 181 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 TMEM92Q6UXU6 159 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 PLA2G12BQ9BX93 195 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 ANO8Q9HCE9 1232 aaPredicted RBP10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 HDAC5Q9UQL6 1122 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 NIP7Q9Y221 180 aaKnown RBP eCLIP10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 EXOC6BQ9Y2D4 811 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 ZNF652Q9Y2D9 606 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 SPEF2Q9C093 1822 aa10.07□□□□□ -0.8
DEPDC4-207ENST00000549249 TNRC6CQ9HCJ0 1690 aaKnown RBP10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 ZPR1O75312 459 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 RFC4P35249 363 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 ANKRD45Q5TZF3 282 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 LMBR1LQ6UX01 489 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 LNPKQ9C0E8 428 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 ZSWIM6Q9HCJ5 1215 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 TRMT112Q9UI30 125 aaKnown RBP10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 PA2G4Q9UQ80 394 aaKnown RBP10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 NOP58Q9Y2X3 529 aaKnown RBP10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 LRP5O75197 1615 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 TAF1P21675 1872 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 COL4A1P02462 1669 aa10.06□□□□□ -0.8
DEPDC4-207ENST00000549249 NRXN2Q9P2S2 1712 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 ABCC12Q96J65 1359 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 FAM177BA6PVY3 158 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 IRS4O14654 1257 aaPredicted RBP10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 GYS1P13807 737 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 RGS3P49796 1198 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 BICDL1Q6ZP65 573 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 CHD1LQ86WJ1 897 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 KLHDC4Q8TBB5 520 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 UTP14AQ9BVJ6 771 aaKnown RBP10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 STK32BQ9NY57 414 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 PNPLA7Q6ZV29 1317 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 SH3TC1Q8TE82 1336 aa10.05□□□□□ -0.8
DEPDC4-207ENST00000549249 A0A1B0GUL6 1792 aa10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 APBB1O00213 710 aa10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 GTPBP6O43824 516 aaPredicted RBP10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 SMARCA5O60264 1052 aaPredicted RBP10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 PDE8AO60658 829 aa10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 CSF1RP07333 972 aa10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 CTSWP56202 376 aa10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 PTPN12Q05209 780 aaKnown RBP10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 VARS2Q5ST30 1063 aaKnown RBP10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 COL23A1Q86Y22 540 aaPredicted RBP10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 NUTM1Q86Y26 1132 aa10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 ANKRD31Q8N7Z5 1873 aa10.04□□□□□ -0.8
DEPDC4-207ENST00000549249 SURF6O75683 361 aaKnown RBP10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 HCLS1P14317 486 aaPredicted RBP10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 HMGB2P26583 209 aaKnown RBP10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 NFIXQ14938 502 aa10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 FAM161AQ3B820 660 aa10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 TTLL11Q8NHH1 800 aa10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 BBXQ8WY36 941 aaPredicted RBP10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 COPRSQ9NQ92 184 aa10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 TFCP2L1Q9NZI6 479 aa10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 CHMP3Q9Y3E7 222 aa10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.03□□□□□ -0.8
DEPDC4-207ENST00000549249 RAB11FIP3O75154 756 aa10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 YY1P25490 414 aa10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 TM4SF1P30408 202 aa10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 SLC15A2Q16348 729 aa10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 ERFEQ4G0M1 354 aa10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 C16orf71Q8IYS4 520 aaPredicted RBP10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 RHPN1Q8TCX5 695 aa10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 OTUD7AQ8TE49 926 aaPredicted RBP10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 SETDB2Q96T68 719 aa10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 SALL3Q9BXA9 1300 aa10.02□□□□□ -0.81
DEPDC4-207ENST00000549249 CARMIL3Q8ND23 1372 aa10.01□□□□□ -0.81
DEPDC4-207ENST00000549249 SASH1O94885 1247 aa10.01□□□□□ -0.81
DEPDC4-207ENST00000549249 DDR1Q08345 913 aa10.01□□□□□ -0.81
DEPDC4-207ENST00000549249 ZNF594Q96JF6 807 aaPredicted RBP10.01□□□□□ -0.81
DEPDC4-207ENST00000549249 CCDC85AQ96PX6 553 aaPredicted RBP10.01□□□□□ -0.81
DEPDC4-207ENST00000549249 LRRCC1Q9C099 1032 aa10.01□□□□□ -0.81
DEPDC4-207ENST00000549249 SIL1Q9H173 461 aa10.01□□□□□ -0.81
DEPDC4-207ENST00000549249 GREM2Q9H772 168 aa10.01□□□□□ -0.81
DEPDC4-207ENST00000549249 POLRMTO00411 1230 aaKnown RBP10□□□□□ -0.81
DEPDC4-207ENST00000549249 ITGA6P23229 1130 aa10□□□□□ -0.81
DEPDC4-207ENST00000549249 HSP90AB4PQ58FF6 505 aa10□□□□□ -0.81
DEPDC4-207ENST00000549249 SLC10A5Q5PT55 438 aa10□□□□□ -0.81
DEPDC4-207ENST00000549249 GPR153Q6NV75 609 aa10□□□□□ -0.81
DEPDC4-207ENST00000549249 ATG9AQ7Z3C6 839 aa10□□□□□ -0.81
DEPDC4-207ENST00000549249 NBPF5PQ86XG9 351 aaPredicted RBP10□□□□□ -0.81
DEPDC4-207ENST00000549249 PLEKHM2Q8IWE5 1019 aa10□□□□□ -0.81
DEPDC4-207ENST00000549249 CCDC24Q8N4L8 307 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms