RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	PDE8A	O60658	829 aa		29.75	■■■□□ 2.35
SMARCD1-204	ENST00000547637	TBC1D16	Q8TBP0	767 aa		29.75	■■■□□ 2.35
SMARCD1-204	ENST00000547637	CWC25	Q9NXE8	425 aa	Predicted RBP	29.75	■■■□□ 2.35
SMARCD1-204	ENST00000547637	PCCA	P05165	728 aa	Predicted RBP	29.74	■■■□□ 2.35
SMARCD1-204	ENST00000547637	PODXL2	Q9NZ53	605 aa		29.74	■■■□□ 2.35
SMARCD1-204	ENST00000547637	DUOX1	Q9NRD9	1551 aa		29.73	■■■□□ 2.35
SMARCD1-204	ENST00000547637	DOK7	Q18PE1	504 aa		29.73	■■■□□ 2.35
SMARCD1-204	ENST00000547637	USP48	Q86UV5	1035 aa		29.73	■■■□□ 2.35
SMARCD1-204	ENST00000547637	DCPS	Q96C86	337 aa	Known RBP	29.73	■■■□□ 2.35
SMARCD1-204	ENST00000547637	GGA1	Q9UJY5	639 aa		29.73	■■■□□ 2.35
SMARCD1-204	ENST00000547637	SAMD7	Q7Z3H4	446 aa		29.72	■■■□□ 2.35
SMARCD1-204	ENST00000547637	METTL22	Q9BUU2	404 aa	Predicted RBP	29.72	■■■□□ 2.35
SMARCD1-204	ENST00000547637	AOC2	O75106	756 aa		29.7	■■■□□ 2.35
SMARCD1-204	ENST00000547637	UFL1	O94874	794 aa		29.7	■■■□□ 2.35
SMARCD1-204	ENST00000547637	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	29.7	■■■□□ 2.35
SMARCD1-204	ENST00000547637	RBM26	Q5T8P6	1007 aa	Known RBP	29.7	■■■□□ 2.35
SMARCD1-204	ENST00000547637	KRT26	Q7Z3Y9	468 aa		29.7	■■■□□ 2.35
SMARCD1-204	ENST00000547637	ANKRD18A	Q8IVF6	992 aa		29.7	■■■□□ 2.35
SMARCD1-204	ENST00000547637	STK31	Q9BXU1	1019 aa		29.7	■■■□□ 2.35
SMARCD1-204	ENST00000547637	SHTN1	A0MZ66	631 aa		29.69	■■■□□ 2.34
SMARCD1-204	ENST00000547637	NEXN	Q0ZGT2	675 aa		29.69	■■■□□ 2.34
SMARCD1-204	ENST00000547637	C8orf58	Q8NAV2	365 aa		29.69	■■■□□ 2.34
SMARCD1-204	ENST00000547637	SEC31B	Q9NQW1	1179 aa		29.69	■■■□□ 2.34
SMARCD1-204	ENST00000547637	THSD7B	Q9C0I4	1608 aa		29.68	■■■□□ 2.34
SMARCD1-204	ENST00000547637	BRPF1	P55201	1214 aa	Predicted RBP	29.68	■■■□□ 2.34
SMARCD1-204	ENST00000547637	NOG	Q13253	232 aa		29.68	■■■□□ 2.34
SMARCD1-204	ENST00000547637	VIL1	P09327	827 aa	Known RBP	29.67	■■■□□ 2.34
SMARCD1-204	ENST00000547637	HUNK	P57058	714 aa		29.67	■■■□□ 2.34
SMARCD1-204	ENST00000547637	C2orf69	Q8N8R5	385 aa		29.67	■■■□□ 2.34
SMARCD1-204	ENST00000547637	ABHD8	Q96I13	439 aa		29.67	■■■□□ 2.34
SMARCD1-204	ENST00000547637	KSR2	Q6VAB6	950 aa		29.66	■■■□□ 2.34
SMARCD1-204	ENST00000547637	CDC5L	Q99459	802 aa	Known RBP	29.66	■■■□□ 2.34
SMARCD1-204	ENST00000547637	MAP3K2	Q9Y2U5	619 aa		29.66	■■■□□ 2.34
SMARCD1-204	ENST00000547637	KIF4B	Q2VIQ3	1234 aa		29.65	■■■□□ 2.34
SMARCD1-204	ENST00000547637	KCNQ5	Q9NR82	932 aa		29.65	■■■□□ 2.34
SMARCD1-204	ENST00000547637	XDH	P47989	1333 aa		29.65	■■■□□ 2.34
SMARCD1-204	ENST00000547637	ATP2B4	P23634	1241 aa		29.64	■■■□□ 2.34
SMARCD1-204	ENST00000547637	SULF1	Q8IWU6	871 aa		29.64	■■■□□ 2.34
SMARCD1-204	ENST00000547637	AGBL3	Q8NEM8	1001 aa		29.64	■■■□□ 2.34
SMARCD1-204	ENST00000547637	CCDC85A	Q96PX6	553 aa	Predicted RBP	29.64	■■■□□ 2.34
SMARCD1-204	ENST00000547637	RTL9	Q8NET4	1388 aa		29.64	■■■□□ 2.33
SMARCD1-204	ENST00000547637	GBA2	Q9HCG7	927 aa	Predicted RBP	29.63	■■■□□ 2.33
SMARCD1-204	ENST00000547637	RGMB	Q6NW40	437 aa		29.62	■■■□□ 2.33
SMARCD1-204	ENST00000547637	JARID2	Q92833	1246 aa	Predicted RBP	29.62	■■■□□ 2.33
SMARCD1-204	ENST00000547637	POLR2A	P24928	1970 aa	Known RBP	29.62	■■■□□ 2.33
SMARCD1-204	ENST00000547637	PI4KAP2	A4QPH2	592 aa		29.61	■■■□□ 2.33
SMARCD1-204	ENST00000547637	PI4KAP1	Q8N8J0	262 aa		29.61	■■■□□ 2.33
SMARCD1-204	ENST00000547637	CCDC102A	Q96A19	550 aa		29.61	■■■□□ 2.33
SMARCD1-204	ENST00000547637	RSBN1L	Q6PCB5	846 aa	Predicted RBP	29.6	■■■□□ 2.33
SMARCD1-204	ENST00000547637	PODN	Q7Z5L7	613 aa		29.6	■■■□□ 2.33
SMARCD1-204	ENST00000547637	TSKS	Q9UJT2	592 aa		29.6	■■■□□ 2.33
SMARCD1-204	ENST00000547637	EGFR	P00533	1210 aa		29.59	■■■□□ 2.33
SMARCD1-204	ENST00000547637	CTSW	P56202	376 aa		29.59	■■■□□ 2.33
SMARCD1-204	ENST00000547637	CCDC27	Q2M243	656 aa		29.59	■■■□□ 2.33
SMARCD1-204	ENST00000547637	TSPYL6	Q8N831	410 aa		29.59	■■■□□ 2.33
SMARCD1-204	ENST00000547637	BSDC1	Q9NW68	430 aa	Predicted RBP	29.57	■■■□□ 2.32
SMARCD1-204	ENST00000547637	GGA3	Q9NZ52	723 aa		29.57	■■■□□ 2.32
SMARCD1-204	ENST00000547637	USP17L3	A6NCW0	530 aa		29.56	■■■□□ 2.32
SMARCD1-204	ENST00000547637	USP17L4	A6NCW7	530 aa		29.56	■■■□□ 2.32
SMARCD1-204	ENST00000547637	ADM5	C9JUS6	153 aa		29.56	■■■□□ 2.32
SMARCD1-204	ENST00000547637	ZNF157	P51786	506 aa	Predicted RBP	29.56	■■■□□ 2.32
SMARCD1-204	ENST00000547637	TWISTNB	Q3B726	338 aa	Predicted RBP	29.56	■■■□□ 2.32
SMARCD1-204	ENST00000547637	USP17L1	Q7RTZ2	530 aa		29.56	■■■□□ 2.32
SMARCD1-204	ENST00000547637	TSR2	Q969E8	191 aa	Known RBP	29.56	■■■□□ 2.32
SMARCD1-204	ENST00000547637	COL4A1	P02462	1669 aa		29.56	■■■□□ 2.32
SMARCD1-204	ENST00000547637	CCDC85C	A6NKD9	419 aa		29.55	■■■□□ 2.32
SMARCD1-204	ENST00000547637	USP17L8	P0C7I0	530 aa		29.55	■■■□□ 2.32
SMARCD1-204	ENST00000547637	ZNF280A	P59817	542 aa	Predicted RBP	29.55	■■■□□ 2.32
SMARCD1-204	ENST00000547637	TTLL11	Q8NHH1	800 aa		29.55	■■■□□ 2.32
SMARCD1-204	ENST00000547637	SLC4A2	P04920	1241 aa		29.54	■■■□□ 2.32
SMARCD1-204	ENST00000547637	IGKV5-2	P06315	115 aa		29.54	■■■□□ 2.32
SMARCD1-204	ENST00000547637	IGHMBP2	P38935	993 aa	Known RBP	29.54	■■■□□ 2.32
SMARCD1-204	ENST00000547637	SCARF1	Q14162	830 aa		29.54	■■■□□ 2.32
SMARCD1-204	ENST00000547637	WWC1	Q8IX03	1113 aa		29.54	■■■□□ 2.32
SMARCD1-204	ENST00000547637	DLK2	Q6UY11	383 aa		29.53	■■■□□ 2.32
SMARCD1-204	ENST00000547637	SCN9A	Q15858	1988 aa		29.53	■■■□□ 2.32
SMARCD1-204	ENST00000547637	ZNF609	O15014	1411 aa		29.53	■■■□□ 2.32
SMARCD1-204	ENST00000547637	OGFOD1	Q8N543	542 aa		29.52	■■■□□ 2.32
SMARCD1-204	ENST00000547637	MYOZ2	Q9NPC6	264 aa		29.52	■■■□□ 2.32
SMARCD1-204	ENST00000547637	MINPP1	Q9UNW1	487 aa		29.52	■■■□□ 2.32
SMARCD1-204	ENST00000547637	IL16	Q14005	1332 aa		29.51	■■■□□ 2.32
SMARCD1-204	ENST00000547637	NEURL1B	A8MQ27	555 aa		29.51	■■■□□ 2.31
SMARCD1-204	ENST00000547637	NCBP3	Q53F19	620 aa	Known RBP	29.51	■■■□□ 2.31
SMARCD1-204	ENST00000547637	ANGEL2	Q5VTE6	544 aa	Known RBP	29.51	■■■□□ 2.31
SMARCD1-204	ENST00000547637	CDCA5	Q96FF9	252 aa		29.51	■■■□□ 2.31
SMARCD1-204	ENST00000547637	MYH16	Q9H6N6	1097 aa		29.51	■■■□□ 2.31
SMARCD1-204	ENST00000547637	GREM2	Q9H772	168 aa		29.51	■■■□□ 2.31
SMARCD1-204	ENST00000547637	CCT4	P50991	539 aa	Known RBP	29.5	■■■□□ 2.31
SMARCD1-204	ENST00000547637	FKBP1B	P68106	108 aa		29.5	■■■□□ 2.31
SMARCD1-204	ENST00000547637	CWF19L2	Q2TBE0	894 aa	Known RBP	29.5	■■■□□ 2.31
SMARCD1-204	ENST00000547637	UBE3B	Q7Z3V4	1068 aa		29.5	■■■□□ 2.31
SMARCD1-204	ENST00000547637	REM2	Q8IYK8	340 aa	Predicted RBP	29.5	■■■□□ 2.31
SMARCD1-204	ENST00000547637	MED23	Q9ULK4	1368 aa		29.5	■■■□□ 2.31
SMARCD1-204	ENST00000547637	MYH3	P11055	1940 aa		29.49	■■■□□ 2.31
SMARCD1-204	ENST00000547637		H7C1W4	665 aa		29.49	■■■□□ 2.31
SMARCD1-204	ENST00000547637	MMP14	P50281	582 aa		29.49	■■■□□ 2.31
SMARCD1-204	ENST00000547637	MPHOSPH8	Q99549	860 aa		29.49	■■■□□ 2.31
SMARCD1-204	ENST00000547637	SAGE1	Q9NXZ1	904 aa		29.49	■■■□□ 2.31
SMARCD1-204	ENST00000547637	LEMD3	Q9Y2U8	911 aa		29.49	■■■□□ 2.31
SMARCD1-204	ENST00000547637	CASP8AP2	Q9UKL3	1982 aa		29.49	■■■□□ 2.31

Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms