RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 SMPD1P17405 629 aa8.34□□□□□ -1.07
PRKDC-211ENST00000546304 AKAP4Q5JQC9 854 aa8.34□□□□□ -1.07
PRKDC-211ENST00000546304 FAM196AQ6ZSG2 479 aa8.34□□□□□ -1.07
PRKDC-211ENST00000546304 FAM9BQ8IZU0 186 aa8.34□□□□□ -1.07
PRKDC-211ENST00000546304 CRIPAKQ8N1N5 446 aa8.34□□□□□ -1.07
PRKDC-211ENST00000546304 EHBP1Q8NDI1 1231 aa8.34□□□□□ -1.07
PRKDC-211ENST00000546304 CTDSPL2Q05D32 466 aa8.33□□□□□ -1.08
PRKDC-211ENST00000546304 NFE2L2Q16236 605 aa8.33□□□□□ -1.08
PRKDC-211ENST00000546304 LINC01559Q495D7 138 aa8.33□□□□□ -1.08
PRKDC-211ENST00000546304 NUP188Q5SRE5 1749 aa8.33□□□□□ -1.08
PRKDC-211ENST00000546304 ARMC2Q8NEN0 867 aa8.33□□□□□ -1.08
PRKDC-211ENST00000546304 DCAF5Q96JK2 942 aa8.33□□□□□ -1.08
PRKDC-211ENST00000546304 PCMTD1Q96MG8 357 aaPredicted RBP8.33□□□□□ -1.08
PRKDC-211ENST00000546304 CEMIPQ8WUJ3 1361 aa8.33□□□□□ -1.08
PRKDC-211ENST00000546304 LAMB4A4D0S4 1761 aa8.33□□□□□ -1.08
PRKDC-211ENST00000546304 TAF1LQ8IZX4 1826 aa8.32□□□□□ -1.08
PRKDC-211ENST00000546304 GNAT3A8MTJ3 354 aa8.32□□□□□ -1.08
PRKDC-211ENST00000546304 VARSP26640 1264 aaKnown RBP8.32□□□□□ -1.08
PRKDC-211ENST00000546304 TMPOP42166 694 aaKnown RBP8.32□□□□□ -1.08
PRKDC-211ENST00000546304 ACSBG1Q96GR2 724 aa8.32□□□□□ -1.08
PRKDC-211ENST00000546304 RRP7AQ9Y3A4 280 aaKnown RBP8.32□□□□□ -1.08
PRKDC-211ENST00000546304 C5P01031 1676 aa8.32□□□□□ -1.08
PRKDC-211ENST00000546304 ZNF831Q5JPB2 1677 aa8.32□□□□□ -1.08
PRKDC-211ENST00000546304 COL5A3P25940 1745 aaPredicted RBP8.32□□□□□ -1.08
PRKDC-211ENST00000546304 TJP1Q07157 1748 aa8.32□□□□□ -1.08
PRKDC-211ENST00000546304 KCPQ6ZWJ8 1503 aa8.31□□□□□ -1.08
PRKDC-211ENST00000546304 APAF1O14727 1248 aa8.31□□□□□ -1.08
PRKDC-211ENST00000546304 TRIM37O94972 964 aa8.31□□□□□ -1.08
PRKDC-211ENST00000546304 LMOD3Q0VAK6 560 aa8.31□□□□□ -1.08
PRKDC-211ENST00000546304 MPRIPQ6WCQ1 1025 aa8.31□□□□□ -1.08
PRKDC-211ENST00000546304 MPNDQ8N594 471 aa8.31□□□□□ -1.08
PRKDC-211ENST00000546304 RTF1Q92541 710 aaKnown RBP8.31□□□□□ -1.08
PRKDC-211ENST00000546304 SYTL4Q96C24 671 aaPredicted RBP8.31□□□□□ -1.08
PRKDC-211ENST00000546304 J3QL48 77 aa8.3□□□□□ -1.08
PRKDC-211ENST00000546304 RNMTO43148 476 aaKnown RBP8.3□□□□□ -1.08
PRKDC-211ENST00000546304 KCNQ2O43526 872 aa8.3□□□□□ -1.08
PRKDC-211ENST00000546304 HTATSF1O43719 755 aaKnown RBP8.3□□□□□ -1.08
PRKDC-211ENST00000546304 RFC5P40937 340 aa8.3□□□□□ -1.08
PRKDC-211ENST00000546304 SMCPP49901 116 aaPredicted RBP8.3□□□□□ -1.08
PRKDC-211ENST00000546304 RIPK4P57078 832 aa8.3□□□□□ -1.08
PRKDC-211ENST00000546304 CTC1Q2NKJ3 1217 aa8.3□□□□□ -1.08
PRKDC-211ENST00000546304 MCM10Q7L590 875 aa8.3□□□□□ -1.08
PRKDC-211ENST00000546304 TMOD3Q9NYL9 352 aa8.3□□□□□ -1.08
PRKDC-211ENST00000546304 TUBGCP6Q96RT7 1819 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 ERVV-2B6SEH9 535 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 PRKCSHP14314 528 aaPredicted RBP8.29□□□□□ -1.08
PRKDC-211ENST00000546304 TEFQ10587 303 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 DCTN1Q14203 1278 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 NBPF14Q5TI25 921 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 PTF1AQ7RTS3 328 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 IL17REQ8NFR9 667 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 LRRN4Q8WUT4 740 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 GPKOWQ92917 476 aaPredicted RBP eCLIP8.29□□□□□ -1.08
PRKDC-211ENST00000546304 THUMPD2Q9BTF0 503 aaKnown RBP8.29□□□□□ -1.08
PRKDC-211ENST00000546304 SLC52A2Q9HAB3 445 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 LGR6Q9HBX8 967 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 AAASQ9NRG9 546 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 PALLDQ8WX93 1383 aa8.29□□□□□ -1.08
PRKDC-211ENST00000546304 SENP3-EIF4A1A0A087X0R7 540 aa8.28□□□□□ -1.08
PRKDC-211ENST00000546304 AP1G2O75843 785 aa8.28□□□□□ -1.08
PRKDC-211ENST00000546304 ALDH1A1P00352 501 aa8.28□□□□□ -1.08
PRKDC-211ENST00000546304 CABP4P57796 275 aa8.28□□□□□ -1.08
PRKDC-211ENST00000546304 FOXJ1Q92949 421 aa8.28□□□□□ -1.08
PRKDC-211ENST00000546304 C4BP0C0L5 1744 aa8.27□□□□□ -1.09
PRKDC-211ENST00000546304 QSER1Q2KHR3 1735 aa8.27□□□□□ -1.09
PRKDC-211ENST00000546304 ST8SIA5O15466 376 aa8.27□□□□□ -1.09
PRKDC-211ENST00000546304 SF3B2Q13435 895 aaKnown RBP8.27□□□□□ -1.09
PRKDC-211ENST00000546304 CCDC27Q2M243 656 aa8.27□□□□□ -1.09
PRKDC-211ENST00000546304 TMEM259Q4ZIN3 620 aa8.27□□□□□ -1.09
PRKDC-211ENST00000546304 BPHLQ86WA6 291 aaPredicted RBP8.27□□□□□ -1.09
PRKDC-211ENST00000546304 FAM174AQ8TBP5 190 aa8.27□□□□□ -1.09
PRKDC-211ENST00000546304 PIGBQ92521 554 aa8.27□□□□□ -1.09
PRKDC-211ENST00000546304 UBR3Q6ZT12 1888 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 AXIN1O15169 862 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 APBA3O96018 575 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 USP17L8P0C7I0 530 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 BAG6P46379 1132 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 SH3BP5LQ7L8J4 393 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 CCDC125Q86Z20 511 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 NGEFQ8N5V2 710 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 NFATC2IPQ8NCF5 419 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 HPS1Q92902 700 aa8.26□□□□□ -1.09
PRKDC-211ENST00000546304 MYH14Q7Z406 1995 aaKnown RBP8.26□□□□□ -1.09
PRKDC-211ENST00000546304 CALD1Q05682 793 aaKnown RBP8.25□□□□□ -1.09
PRKDC-211ENST00000546304 C4orf48Q5BLP8 95 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 SH3RF1Q7Z6J0 888 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 WWC1Q8IX03 1113 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 SMARCC1Q92922 1105 aaPredicted RBP8.25□□□□□ -1.09
PRKDC-211ENST00000546304 CDK15Q96Q40 435 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 C1QTNF2Q9BXJ5 285 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 ATG3Q9NT62 314 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 FKBPLQ9UIM3 349 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 ASAP1Q9ULH1 1129 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 C4AP0C0L4 1744 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 ZNF521Q96K83 1311 aa8.25□□□□□ -1.09
PRKDC-211ENST00000546304 ZC3H4Q9UPT8 1303 aaKnown RBP8.25□□□□□ -1.09
PRKDC-211ENST00000546304 BTBD11A6QL63 1104 aa8.24□□□□□ -1.09
PRKDC-211ENST00000546304 PLSCR1O15162 318 aa8.24□□□□□ -1.09
PRKDC-211ENST00000546304 HNRNPUQ00839 825 aaKnown RBP eCLIP8.24□□□□□ -1.09
PRKDC-211ENST00000546304 SLC39A6Q13433 755 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms