RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 SMC1BQ8NDV3 1235 aa14.46□□□□□ -0.09
YBX3-216ENST00000544622 ARHGAP45Q92619 1136 aa14.46□□□□□ -0.09
YBX3-216ENST00000544622 USP44Q9H0E7 712 aa14.46□□□□□ -0.09
YBX3-216ENST00000544622 C9orf78Q9NZ63 289 aaPredicted RBP14.46□□□□□ -0.09
YBX3-216ENST00000544622 NOB1Q9ULX3 412 aaKnown RBP14.46□□□□□ -0.09
YBX3-216ENST00000544622 XDHP47989 1333 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 ZBED9Q6R2W3 1325 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 C6orf229H3BNL8 230 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 POTEIP0CG38 1075 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 POTEJP0CG39 1038 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 RABL6Q3YEC7 729 aaPredicted RBP14.45□□□□□ -0.1
YBX3-216ENST00000544622 LMBR1LQ6UX01 489 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 SUCLG2Q96I99 432 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 EYA3Q99504 573 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 ANKIB1Q9P2G1 1089 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 HACL1Q9UJ83 578 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 GGA1Q9UJY5 639 aa14.45□□□□□ -0.1
YBX3-216ENST00000544622 PCNTO95613 3336 aa14.44□□□□□ -0.1
YBX3-216ENST00000544622 ANKRD18BA2A2Z9 1011 aa14.44□□□□□ -0.1
YBX3-216ENST00000544622 RIMBP2O15034 1052 aa14.44□□□□□ -0.1
YBX3-216ENST00000544622 ATP2B4P23634 1241 aa14.44□□□□□ -0.1
YBX3-216ENST00000544622 IGHMBP2P38935 993 aaKnown RBP14.44□□□□□ -0.1
YBX3-216ENST00000544622 GPR101Q96P66 508 aaPredicted RBP14.44□□□□□ -0.1
YBX3-216ENST00000544622 ZC3H12CQ9C0D7 883 aaKnown RBP14.44□□□□□ -0.1
YBX3-216ENST00000544622 GJA3Q9Y6H8 435 aa14.44□□□□□ -0.1
YBX3-216ENST00000544622 UFL1O94874 794 aa14.43□□□□□ -0.1
YBX3-216ENST00000544622 EPHX2P34913 555 aa14.43□□□□□ -0.1
YBX3-216ENST00000544622 EPS15P42566 896 aa14.43□□□□□ -0.1
YBX3-216ENST00000544622 IFIT5Q13325 482 aaKnown RBP14.43□□□□□ -0.1
YBX3-216ENST00000544622 CIAPIN1Q6FI81 312 aa14.43□□□□□ -0.1
YBX3-216ENST00000544622 PNMA8AQ86V59 439 aaPredicted RBP14.43□□□□□ -0.1
YBX3-216ENST00000544622 DBNDD1Q9H9R9 158 aa14.43□□□□□ -0.1
YBX3-216ENST00000544622 KCNQ5Q9NR82 932 aa14.43□□□□□ -0.1
YBX3-216ENST00000544622 ADAMTSL1Q8N6G6 1762 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 RAD17O75943 681 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 CCT4P50991 539 aaKnown RBP14.42□□□□□ -0.1
YBX3-216ENST00000544622 TNIP1Q15025 636 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 CHADLQ6NUI6 762 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 LDHDQ86WU2 507 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 ANKRD44Q8N8A2 993 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 MPHOSPH8Q99549 860 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 API5Q9BZZ5 524 aaKnown RBP14.42□□□□□ -0.1
YBX3-216ENST00000544622 GPRC5DQ9NZD1 345 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 LEMD3Q9Y2U8 911 aa14.42□□□□□ -0.1
YBX3-216ENST00000544622 ECE2O60344 883 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 BCAR3O75815 825 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 APLP1P51693 650 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 CHRNDQ07001 517 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 DOK7Q18PE1 504 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 CCDC57Q2TAC2 916 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 TXNRD3Q86VQ6 643 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 ANKRD2Q9GZV1 360 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 BICC1Q9H694 974 aaKnown RBP14.41□□□□□ -0.1
YBX3-216ENST00000544622 MED23Q9ULK4 1368 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 IRS2Q9Y4H2 1338 aa14.41□□□□□ -0.1
YBX3-216ENST00000544622 PSMD14O00487 310 aa14.4□□□□□ -0.1
YBX3-216ENST00000544622 ITGBL1O95965 494 aaPredicted RBP14.4□□□□□ -0.1
YBX3-216ENST00000544622 VIL1P09327 827 aaKnown RBP14.4□□□□□ -0.1
YBX3-216ENST00000544622 GMPSP49915 693 aaPredicted RBP14.4□□□□□ -0.1
YBX3-216ENST00000544622 INTS3Q68E01 1043 aaKnown RBP14.4□□□□□ -0.1
YBX3-216ENST00000544622 PODNQ7Z5L7 613 aa14.4□□□□□ -0.1
YBX3-216ENST00000544622 DPF2Q92785 391 aa14.4□□□□□ -0.1
YBX3-216ENST00000544622 ZNF594Q96JF6 807 aaPredicted RBP14.4□□□□□ -0.1
YBX3-216ENST00000544622 KIF16BQ96L93 1317 aa14.4□□□□□ -0.1
YBX3-216ENST00000544622 LMOD1P29536 600 aaPredicted RBP14.39□□□□□ -0.11
YBX3-216ENST00000544622 LDHAL6AQ6ZMR3 332 aa14.39□□□□□ -0.11
YBX3-216ENST00000544622 C15orf52Q6ZUT6 534 aaKnown RBP14.39□□□□□ -0.11
YBX3-216ENST00000544622 USP50Q70EL3 339 aaPredicted RBP14.39□□□□□ -0.11
YBX3-216ENST00000544622 DNAJC5GQ8N7S2 189 aa14.39□□□□□ -0.11
YBX3-216ENST00000544622 PGAP2Q9UHJ9 254 aa14.39□□□□□ -0.11
YBX3-216ENST00000544622 ZBTB12Q9Y330 459 aaPredicted RBP14.39□□□□□ -0.11
YBX3-216ENST00000544622 ZNF804BA4D1E1 1349 aa14.39□□□□□ -0.11
YBX3-216ENST00000544622 PASKQ96RG2 1323 aa14.39□□□□□ -0.11
YBX3-216ENST00000544622 TRIM27P14373 513 aa14.38□□□□□ -0.11
YBX3-216ENST00000544622 ATF7IPQ6VMQ6 1270 aa14.38□□□□□ -0.11
YBX3-216ENST00000544622 ADARB2Q9NS39 739 aaKnown RBP14.38□□□□□ -0.11
YBX3-216ENST00000544622 CNOT7Q9UIV1 285 aaKnown RBP14.38□□□□□ -0.11
YBX3-216ENST00000544622 CHMP3Q9Y3E7 222 aa14.38□□□□□ -0.11
YBX3-216ENST00000544622 RIPOR2Q9Y4F9 1068 aa14.38□□□□□ -0.11
YBX3-216ENST00000544622 ZNF609O15014 1411 aa14.38□□□□□ -0.11
YBX3-216ENST00000544622 SCN9AQ15858 1988 aa14.38□□□□□ -0.11
YBX3-216ENST00000544622 SPEF2Q9C093 1822 aa14.37□□□□□ -0.11
YBX3-216ENST00000544622 SNAP23O00161 211 aa14.37□□□□□ -0.11
YBX3-216ENST00000544622 IPO8O15397 1037 aaKnown RBP14.37□□□□□ -0.11
YBX3-216ENST00000544622 TAF5LO75529 589 aa14.37□□□□□ -0.11
YBX3-216ENST00000544622 RPS12P25398 132 aaKnown RBP14.37□□□□□ -0.11
YBX3-216ENST00000544622 KLRK1P26718 216 aa14.37□□□□□ -0.11
YBX3-216ENST00000544622 HIRAP54198 1017 aaPredicted RBP14.37□□□□□ -0.11
YBX3-216ENST00000544622 EAPPQ56P03 285 aaPredicted RBP14.37□□□□□ -0.11
YBX3-216ENST00000544622 GMLQ99445 158 aa14.37□□□□□ -0.11
YBX3-216ENST00000544622 PUS3Q9BZE2 481 aaKnown RBP14.37□□□□□ -0.11
YBX3-216ENST00000544622 COA1Q9GZY4 146 aa14.37□□□□□ -0.11
YBX3-216ENST00000544622 SHTN1A0MZ66 631 aa14.36□□□□□ -0.11
YBX3-216ENST00000544622 RFX5P48382 616 aaPredicted RBP14.36□□□□□ -0.11
YBX3-216ENST00000544622 HELBQ8NG08 1087 aaPredicted RBP14.36□□□□□ -0.11
YBX3-216ENST00000544622 TNNQ9UQP3 1299 aa14.36□□□□□ -0.11
YBX3-216ENST00000544622 HTRA3P83110 453 aa14.35□□□□□ -0.11
YBX3-216ENST00000544622 MAP1SQ66K74 1059 aaPredicted RBP14.35□□□□□ -0.11
YBX3-216ENST00000544622 RSBN1LQ6PCB5 846 aaPredicted RBP14.35□□□□□ -0.11
YBX3-216ENST00000544622 MICALL2Q8IY33 904 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms