RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 NEUROD1Q13562 356 aa6.65□□□□□ -1.34
NPIPB3-211ENST00000542953 CC2D2BQ6DHV5 1058 aa6.65□□□□□ -1.34
NPIPB3-211ENST00000542953 CDHR2Q9BYE9 1310 aa6.65□□□□□ -1.35
NPIPB3-211ENST00000542953 CENPFP49454 3210 aa6.65□□□□□ -1.35
NPIPB3-211ENST00000542953 UBR2Q8IWV8 1755 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 TRIOBPQ9H2D6 2365 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 SOWAHBA6NEL2 793 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 ALDH1B1P30837 517 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 IL6STP40189 918 aaPredicted RBP6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 KIF23Q02241 960 aaPredicted RBP6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 GRIPAP1Q4V328 841 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 RGMBQ6NW40 437 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 CDC37L1Q7L3B6 337 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 AEBP1Q8IUX7 1158 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 CCDC102AQ96A19 550 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 TBC1D2BQ9UPU7 963 aa6.64□□□□□ -1.35
NPIPB3-211ENST00000542953 NPHP1O15259 732 aa6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 RNMTO43148 476 aaKnown RBP6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 SLC10A3P09131 477 aa6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 HIRAP54198 1017 aaPredicted RBP6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 KCNC4Q03721 635 aa6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 TRIM26Q12899 539 aaPredicted RBP6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 CRY2Q49AN0 593 aa6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 NOM1Q5C9Z4 860 aaKnown RBP6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 CLEC4GQ6UXB4 293 aa6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 NBPF5PQ86XG9 351 aaPredicted RBP6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 LARGE2Q8N3Y3 721 aa6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 CSRNP1Q96S65 589 aa6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 LGR6Q9HBX8 967 aa6.63□□□□□ -1.35
NPIPB3-211ENST00000542953 NPC1L1Q9UHC9 1359 aa6.62□□□□□ -1.35
NPIPB3-211ENST00000542953 FBXO46Q6PJ61 603 aaPredicted RBP6.62□□□□□ -1.35
NPIPB3-211ENST00000542953 FBXW7Q969H0 707 aa6.62□□□□□ -1.35
NPIPB3-211ENST00000542953 TEX13AQ9BXU3 409 aaPredicted RBP6.62□□□□□ -1.35
NPIPB3-211ENST00000542953 ZNF408Q9H9D4 720 aa6.62□□□□□ -1.35
NPIPB3-211ENST00000542953 CEP290O15078 2479 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 RIC1Q4ADV7 1423 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 HEG1Q9ULI3 1381 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 LAMA3Q16787 3333 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 GMPSP49915 693 aaPredicted RBP6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 BCAMP50895 628 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 CXCL9Q07325 125 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 CDCA8Q53HL2 280 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 NIM1KQ8IY84 436 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 TRPM4Q8TD43 1214 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 ZNF296Q8WUU4 475 aaPredicted RBP6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 ZNF496Q96IT1 587 aaPredicted RBP6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 VPS33BQ9H267 617 aa6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 GBA2Q9HCG7 927 aaPredicted RBP6.61□□□□□ -1.35
NPIPB3-211ENST00000542953 KIF7Q2M1P5 1343 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 HOXA10P31260 410 aaPredicted RBP6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 ZNF157P51786 506 aaPredicted RBP6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 MAP3K9P80192 1104 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 PROX2Q3B8N5 592 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 SULT6B1Q6IMI4 303 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 TPTE2Q6XPS3 522 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 USP48Q86UV5 1035 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 DZIP3Q86Y13 1208 aaKnown RBP6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 C2orf69Q8N8R5 385 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 SLC17A8Q8NDX2 589 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 ZFRQ96KR1 1074 aaKnown RBP6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 HDAC9Q9UKV0 1011 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 ZNRF3Q9ULT6 936 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 ZNF652Q9Y2D9 606 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 PCDHGA10Q9Y5H3 936 aa6.6□□□□□ -1.35
NPIPB3-211ENST00000542953 AKAP11Q9UKA4 1901 aa6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 PPIP5K2O43314 1243 aa6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 A1BGP04217 495 aa6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 INTS3Q68E01 1043 aaKnown RBP6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 ZNF790Q6PG37 636 aa6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 KRT26Q7Z3Y9 468 aa6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 RASAL3Q86YV0 1011 aa6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 TTC5Q8N0Z6 440 aa6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 CFHR5Q9BXR6 569 aa6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 RTFDC1Q9BY42 306 aaPredicted RBP6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 ZNF330Q9Y3S2 320 aaPredicted RBP6.59□□□□□ -1.35
NPIPB3-211ENST00000542953 ABCC12Q96J65 1359 aa6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 UNC80Q8N2C7 3258 aa6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 PITPNM2Q9BZ72 1349 aa6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 COL9A1P20849 921 aa6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 AOC3Q16853 763 aa6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 TYW1BQ6NUM6 668 aa6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 DLK2Q6UY11 383 aa6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 NPM2Q86SE8 214 aaKnown RBP6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 DDX27Q96GQ7 796 aaKnown RBP6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 KIAA1468Q9P260 1216 aa6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 KIAA0100Q14667 2235 aaKnown RBP6.58□□□□□ -1.36
NPIPB3-211ENST00000542953 RBBP6Q7Z6E9 1792 aaKnown RBP6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 GPR25O00155 361 aa6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 IL13P35225 146 aa6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 TNNT2P45379 298 aaPredicted RBP6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 TNIP1Q15025 636 aa6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 TRAF7Q6Q0C0 670 aa6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 SLC51AQ86UW1 340 aa6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 DPF2Q92785 391 aa6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 FMNL2Q96PY5 1086 aa6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 CRAMP1Q96RY5 1269 aa6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 CNOT7Q9UIV1 285 aaKnown RBP6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 NIP7Q9Y221 180 aaKnown RBP eCLIP6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 IBTKQ9P2D0 1353 aaPredicted RBP6.57□□□□□ -1.36
NPIPB3-211ENST00000542953 VCANP13611 3396 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms