RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-210ENST00000542817 SNAP23O00161 211 aa13.29□□□□□ -0.28
NPIPB3-210ENST00000542817 CIAO1O76071 339 aa13.29□□□□□ -0.28
NPIPB3-210ENST00000542817 YBX3P16989 372 aaKnown RBP eCLIP13.29□□□□□ -0.28
NPIPB3-210ENST00000542817 DALRD3Q5D0E6 543 aaKnown RBP13.29□□□□□ -0.28
NPIPB3-210ENST00000542817 LDHAL6AQ6ZMR3 332 aa13.29□□□□□ -0.28
NPIPB3-210ENST00000542817 SIL1Q9H173 461 aa13.29□□□□□ -0.28
NPIPB3-210ENST00000542817 EXOC6BQ9Y2D4 811 aa13.29□□□□□ -0.28
NPIPB3-210ENST00000542817 IRS2Q9Y4H2 1338 aa13.29□□□□□ -0.28
NPIPB3-210ENST00000542817 C21orf2O43822 256 aa13.28□□□□□ -0.28
NPIPB3-210ENST00000542817 IGHMBP2P38935 993 aaKnown RBP13.28□□□□□ -0.28
NPIPB3-210ENST00000542817 GPSM2P81274 684 aa13.28□□□□□ -0.28
NPIPB3-210ENST00000542817 CHRNDQ07001 517 aa13.28□□□□□ -0.28
NPIPB3-210ENST00000542817 FBXO3Q9UK99 471 aa13.28□□□□□ -0.28
NPIPB3-210ENST00000542817 A0A1B0GUL6 1792 aa13.28□□□□□ -0.28
NPIPB3-210ENST00000542817 SPEF2Q9C093 1822 aa13.28□□□□□ -0.28
NPIPB3-210ENST00000542817 CACNA1SQ13698 1873 aa13.28□□□□□ -0.28
NPIPB3-210ENST00000542817 SURF6O75683 361 aaKnown RBP13.27□□□□□ -0.29
NPIPB3-210ENST00000542817 PRELPP51888 382 aa13.27□□□□□ -0.29
NPIPB3-210ENST00000542817 ERICH6BQ5W0A0 696 aa13.27□□□□□ -0.29
NPIPB3-210ENST00000542817 HELBQ8NG08 1087 aaPredicted RBP13.27□□□□□ -0.29
NPIPB3-210ENST00000542817 PODXL2Q9NZ53 605 aa13.27□□□□□ -0.29
NPIPB3-210ENST00000542817 KDM2BQ8NHM5 1336 aa13.27□□□□□ -0.29
NPIPB3-210ENST00000542817 TAF5LO75529 589 aa13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 FGFR2P21802 821 aa13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 TMC4Q7Z404 712 aa13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 SMC5Q8IY18 1101 aa13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 MPHOSPH8Q99549 860 aa13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 RTFDC1Q9BY42 306 aaPredicted RBP13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 ZNF219Q9P2Y4 722 aaPredicted RBP13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 POLLQ9UGP5 575 aa13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 BCS1LQ9Y276 419 aa13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 ARFGEF1Q9Y6D6 1849 aa13.26□□□□□ -0.29
NPIPB3-210ENST00000542817 NFKBIEO00221 500 aa13.25□□□□□ -0.29
NPIPB3-210ENST00000542817 HMMRO75330 724 aa13.25□□□□□ -0.29
NPIPB3-210ENST00000542817 NEFLP07196 543 aa13.25□□□□□ -0.29
NPIPB3-210ENST00000542817 IL15P40933 162 aaPredicted RBP13.25□□□□□ -0.29
NPIPB3-210ENST00000542817 TFCP2Q12800 502 aa13.25□□□□□ -0.29
NPIPB3-210ENST00000542817 TAF7LQ5H9L4 462 aa13.25□□□□□ -0.29
NPIPB3-210ENST00000542817 MROH5Q6ZUA9 1318 aa13.25□□□□□ -0.29
NPIPB3-210ENST00000542817 CNNM1Q9NRU3 951 aa13.25□□□□□ -0.29
NPIPB3-210ENST00000542817 PDE8BO95263 885 aa13.24□□□□□ -0.29
NPIPB3-210ENST00000542817 KLRK1P26718 216 aa13.24□□□□□ -0.29
NPIPB3-210ENST00000542817 TXNRD3Q86VQ6 643 aa13.24□□□□□ -0.29
NPIPB3-210ENST00000542817 TBC1D16Q8TBP0 767 aa13.24□□□□□ -0.29
NPIPB3-210ENST00000542817 GPR101Q96P66 508 aaPredicted RBP13.24□□□□□ -0.29
NPIPB3-210ENST00000542817 FER1L6Q2WGJ9 1857 aa13.24□□□□□ -0.29
NPIPB3-210ENST00000542817 COL4A5P29400 1685 aa13.24□□□□□ -0.29
NPIPB3-210ENST00000542817 G3BP1Q13283 466 aaKnown RBP eCLIP13.23□□□□□ -0.29
NPIPB3-210ENST00000542817 METTL24Q5JXM2 366 aa13.23□□□□□ -0.29
NPIPB3-210ENST00000542817 RHPN1Q8TCX5 695 aa13.23□□□□□ -0.29
NPIPB3-210ENST00000542817 RWDD1Q9H446 243 aaPredicted RBP13.23□□□□□ -0.29
NPIPB3-210ENST00000542817 XDHP47989 1333 aa13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 SMARCA5O60264 1052 aaPredicted RBP13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 CCDC93Q567U6 631 aa13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 CC2D2BQ6DHV5 1058 aa13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 B4GALNT3Q6L9W6 998 aa13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 MPNDQ8N594 471 aa13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 EAF2Q96CJ1 260 aaPredicted RBP13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 PSMD1Q99460 953 aa13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 NSFL1CQ9UNZ2 370 aaKnown RBP13.22□□□□□ -0.29
NPIPB3-210ENST00000542817 ZNF804BA4D1E1 1349 aa13.21□□□□□ -0.29
NPIPB3-210ENST00000542817 RAB11FIP3O75154 756 aa13.21□□□□□ -0.29
NPIPB3-210ENST00000542817 TIMM10P62072 90 aa13.21□□□□□ -0.29
NPIPB3-210ENST00000542817 GCC1Q96CN9 775 aa13.21□□□□□ -0.29
NPIPB3-210ENST00000542817 ANKRD2Q9GZV1 360 aa13.21□□□□□ -0.29
NPIPB3-210ENST00000542817 PPP4R2Q9NY27 417 aa13.21□□□□□ -0.29
NPIPB3-210ENST00000542817 TLR7Q9NYK1 1049 aaKnown RBP13.21□□□□□ -0.29
NPIPB3-210ENST00000542817 ZNF609O15014 1411 aa13.21□□□□□ -0.3
NPIPB3-210ENST00000542817 LTBP3Q9NS15 1303 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 APBB1O00213 710 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 ADORA1P30542 326 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 FKBP4Q02790 459 aaKnown RBP eCLIP13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 RASSF7Q02833 373 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 UBE4AQ14139 1066 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 TNNI3KQ59H18 835 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 DPP8Q6V1X1 898 aaPredicted RBP13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 C15orf52Q6ZUT6 534 aaKnown RBP13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 C16orf71Q8IYS4 520 aaPredicted RBP13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 RTKN2Q8IZC4 609 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 KIF1BPQ96EK5 621 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 IL1RAPL2Q9NP60 686 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 GPR108Q9NPR9 543 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 ANKIB1Q9P2G1 1089 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 CEP126Q9P2H0 1117 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 GGA1Q9UJY5 639 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 LEMD3Q9Y2U8 911 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 FPGT-TNNI3KV9GXZ4 949 aa13.2□□□□□ -0.3
NPIPB3-210ENST00000542817 SALL3Q9BXA9 1300 aa13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 UFL1O94874 794 aa13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 ATP2B4P23634 1241 aa13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 NUCB1Q02818 461 aa13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 PUM3Q15397 648 aaKnown RBP13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 HSP90AB4PQ58FF6 505 aa13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 SOGA3Q5TF21 947 aa13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 OTUD7AQ8TE49 926 aaPredicted RBP13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 FAM84BQ96KN1 310 aaPredicted RBP13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 ZNF277Q9NRM2 450 aaPredicted RBP13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 DBNLQ9UJU6 430 aaKnown RBP13.19□□□□□ -0.3
NPIPB3-210ENST00000542817 A0A1B0GUL7 405 aa13.18□□□□□ -0.3
NPIPB3-210ENST00000542817 ATP2B3Q16720 1220 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms