RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 JAKMIP3Q5VZ66 844 aa13.07□□□□□ -0.32
CDH3-203ENST00000542274 RPAP2Q8IXW5 612 aaPredicted RBP13.07□□□□□ -0.32
CDH3-203ENST00000542274 SPG7Q9UQ90 795 aa13.07□□□□□ -0.32
CDH3-203ENST00000542274 GOLGA6L22H0YM25 854 aa13.06□□□□□ -0.32
CDH3-203ENST00000542274 SLC39A6Q13433 755 aa13.06□□□□□ -0.32
CDH3-203ENST00000542274 NAIF1Q69YI7 327 aaPredicted RBP13.06□□□□□ -0.32
CDH3-203ENST00000542274 RBM42Q9BTD8 480 aaKnown RBP13.06□□□□□ -0.32
CDH3-203ENST00000542274 ATG3Q9NT62 314 aa13.06□□□□□ -0.32
CDH3-203ENST00000542274 CHMP5Q9NZZ3 219 aa13.06□□□□□ -0.32
CDH3-203ENST00000542274 SIPA1L3O60292 1781 aaPredicted RBP13.06□□□□□ -0.32
CDH3-203ENST00000542274 NUTM2BA6NNL0 878 aaPredicted RBP13.06□□□□□ -0.32
CDH3-203ENST00000542274 NUTM2EB1AL46 878 aaPredicted RBP13.06□□□□□ -0.32
CDH3-203ENST00000542274 CCT4P50991 539 aaKnown RBP13.06□□□□□ -0.32
CDH3-203ENST00000542274 MUM1L1Q5H9M0 696 aa13.06□□□□□ -0.32
CDH3-203ENST00000542274 NUTM2AQ8IVF1 878 aaPredicted RBP13.06□□□□□ -0.32
CDH3-203ENST00000542274 NME8Q8N427 588 aa13.06□□□□□ -0.32
CDH3-203ENST00000542274 ETAA1Q9NY74 926 aa13.06□□□□□ -0.32
CDH3-203ENST00000542274 LRRFIP2Q9Y608 721 aaKnown RBP13.06□□□□□ -0.32
CDH3-203ENST00000542274 PKD1L3Q7Z443 1732 aa13.06□□□□□ -0.32
CDH3-203ENST00000542274 PROSER3Q2NL68 480 aa13.05□□□□□ -0.32
CDH3-203ENST00000542274 COL16A1Q07092 1604 aaPredicted RBP13.05□□□□□ -0.32
CDH3-203ENST00000542274 KAT6BQ8WYB5 2073 aa13.05□□□□□ -0.32
CDH3-203ENST00000542274 UBAP1LF5GYI3 381 aa13.05□□□□□ -0.32
CDH3-203ENST00000542274 TRIM74Q86UV6 250 aa13.05□□□□□ -0.32
CDH3-203ENST00000542274 TRIM73Q86UV7 250 aa13.05□□□□□ -0.32
CDH3-203ENST00000542274 PACS2Q86VP3 889 aa13.05□□□□□ -0.32
CDH3-203ENST00000542274 CD2BP2O95400 341 aaKnown RBP13.04□□□□□ -0.32
CDH3-203ENST00000542274 NAP1L1P55209 391 aaKnown RBP13.04□□□□□ -0.32
CDH3-203ENST00000542274 IFNL2Q8IZJ0 200 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 USP44Q9H0E7 712 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 GNAI2P04899 355 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 PARP4Q9UKK3 1724 aaKnown RBP13.04□□□□□ -0.32
CDH3-203ENST00000542274 OVOS2A0A0G2JMS6 1433 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 TTC22Q5TAA0 569 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 MCTP2Q6DN12 878 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 KIF18AQ8NI77 898 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 DDX54Q8TDD1 881 aaKnown RBP13.04□□□□□ -0.32
CDH3-203ENST00000542274 KCNV2Q8TDN2 545 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 TATDN2Q93075 761 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 KIF2CQ99661 725 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 NUB1Q9Y5A7 615 aa13.04□□□□□ -0.32
CDH3-203ENST00000542274 ADAMTS7Q9UKP4 1686 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 PI4KAP2A4QPH2 592 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 NAT1P18440 290 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 PI4KAP1Q8N8J0 262 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 THOC1Q96FV9 657 aaKnown RBP13.03□□□□□ -0.32
CDH3-203ENST00000542274 RMI1Q9H9A7 625 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 TOM1O60784 492 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 NBPF7P0C2Y1 421 aaPredicted RBP13.03□□□□□ -0.32
CDH3-203ENST00000542274 SDSP20132 328 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 CD151P48509 253 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 SKOR2Q2VWA4 1001 aaPredicted RBP13.03□□□□□ -0.32
CDH3-203ENST00000542274 ZNF280DQ6N043 979 aa13.03□□□□□ -0.32
CDH3-203ENST00000542274 COL22A1Q8NFW1 1626 aaPredicted RBP13.02□□□□□ -0.32
CDH3-203ENST00000542274 IL2RBP14784 551 aa13.02□□□□□ -0.32
CDH3-203ENST00000542274 ZCRB1Q8TBF4 217 aaKnown RBP13.02□□□□□ -0.32
CDH3-203ENST00000542274 SHANK3Q9BYB0 1731 aa13.02□□□□□ -0.33
CDH3-203ENST00000542274 CTIFO43310 598 aaKnown RBP13.02□□□□□ -0.33
CDH3-203ENST00000542274 KINO60870 393 aaKnown RBP13.02□□□□□ -0.33
CDH3-203ENST00000542274 FOXD4Q12950 439 aaPredicted RBP13.02□□□□□ -0.33
CDH3-203ENST00000542274 SLC52A2Q9HAB3 445 aa13.02□□□□□ -0.33
CDH3-203ENST00000542274 FOXD4L1Q9NU39 408 aa13.02□□□□□ -0.33
CDH3-203ENST00000542274 BABAM1Q9NWV8 329 aa13.02□□□□□ -0.33
CDH3-203ENST00000542274 BIN2Q9UBW5 565 aaPredicted RBP13.02□□□□□ -0.33
CDH3-203ENST00000542274 ANKRD18BA2A2Z9 1011 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 RIOK3O14730 519 aaKnown RBP13.01□□□□□ -0.33
CDH3-203ENST00000542274 CAPN15O75808 1086 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 PIP4K2AP48426 406 aaPredicted RBP13.01□□□□□ -0.33
CDH3-203ENST00000542274 SUGP1Q8IWZ8 645 aaKnown RBP13.01□□□□□ -0.33
CDH3-203ENST00000542274 TEX13AQ9BXU3 409 aaPredicted RBP13.01□□□□□ -0.33
CDH3-203ENST00000542274 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.01□□□□□ -0.33
CDH3-203ENST00000542274 COL14A1Q05707 1796 aaKnown RBP13.01□□□□□ -0.33
CDH3-203ENST00000542274 CDC45O75419 566 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 RHBDL3P58872 404 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 IRX1P78414 480 aaPredicted RBP13.01□□□□□ -0.33
CDH3-203ENST00000542274 PSMD2Q13200 908 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 SLC24A3Q9HC58 644 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 GOPCQ9HD26 462 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 IL1RAPL2Q9NP60 686 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 ST7Q9NRC1 585 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.01□□□□□ -0.33
CDH3-203ENST00000542274 CACNA1FO60840 1977 aa13.01□□□□□ -0.33
CDH3-203ENST00000542274 PES1O00541 588 aaKnown RBP13□□□□□ -0.33
CDH3-203ENST00000542274 NCBP1Q09161 790 aaKnown RBP13□□□□□ -0.33
CDH3-203ENST00000542274 FAXDC2Q96IV6 333 aa13□□□□□ -0.33
CDH3-203ENST00000542274 AP1ARQ63HQ0 302 aa13□□□□□ -0.33
CDH3-203ENST00000542274 KRBA2Q6ZNG9 492 aa13□□□□□ -0.33
CDH3-203ENST00000542274 RANBP17Q9H2T7 1088 aaKnown RBP13□□□□□ -0.33
CDH3-203ENST00000542274 C5P01031 1676 aa13□□□□□ -0.33
CDH3-203ENST00000542274 HMMRO75330 724 aa12.99□□□□□ -0.33
CDH3-203ENST00000542274 UBTFL1P0CB47 393 aaPredicted RBP12.99□□□□□ -0.33
CDH3-203ENST00000542274 AIMP1Q12904 312 aaKnown RBP12.99□□□□□ -0.33
CDH3-203ENST00000542274 KCTD17Q8N5Z5 321 aa12.99□□□□□ -0.33
CDH3-203ENST00000542274 DCAF5Q96JK2 942 aa12.99□□□□□ -0.33
CDH3-203ENST00000542274 ZNF396Q96N95 335 aaPredicted RBP12.99□□□□□ -0.33
CDH3-203ENST00000542274 PLCH1Q4KWH8 1693 aa12.99□□□□□ -0.33
CDH3-203ENST00000542274 GIGYF1O75420 1035 aaPredicted RBP12.99□□□□□ -0.33
CDH3-203ENST00000542274 GNAI3P08754 354 aa12.99□□□□□ -0.33
CDH3-203ENST00000542274 SRLQ86TD4 932 aa12.99□□□□□ -0.33
CDH3-203ENST00000542274 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms