RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 IL2RBP14784 551 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 VSIG10Q8N0Z9 540 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 DBNDD2Q9BQY9 259 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 FUCA2Q9BTY2 467 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 ISCA1Q9BUE6 129 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 DSCC1Q9BVC3 393 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 PLA2G12BQ9BX93 195 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 ANO8Q9HCE9 1232 aaPredicted RBP11.78□□□□□ -0.52
LMO3-227ENST00000541764 PRDM11Q9NQV5 511 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 CCDC39Q9UFE4 941 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 SHANK3Q9BYB0 1731 aa11.78□□□□□ -0.52
LMO3-227ENST00000541764 ABCC12Q96J65 1359 aa11.77□□□□□ -0.52
LMO3-227ENST00000541764 ATP5J2-PTCD1G3V325 749 aa11.77□□□□□ -0.52
LMO3-227ENST00000541764 PTCD1O75127 700 aaKnown RBP11.77□□□□□ -0.52
LMO3-227ENST00000541764 LARP1BQ659C4 914 aaKnown RBP11.77□□□□□ -0.52
LMO3-227ENST00000541764 POTEGQ6S5H5 508 aa11.77□□□□□ -0.52
LMO3-227ENST00000541764 FBXL16Q8N461 479 aa11.77□□□□□ -0.52
LMO3-227ENST00000541764 LLPHQ9BRT6 129 aaKnown RBP11.77□□□□□ -0.52
LMO3-227ENST00000541764 TEX13AQ9BXU3 409 aaPredicted RBP11.77□□□□□ -0.52
LMO3-227ENST00000541764 AGXT2Q9BYV1 514 aa11.77□□□□□ -0.52
LMO3-227ENST00000541764 GDPD2Q9HCC8 539 aa11.77□□□□□ -0.52
LMO3-227ENST00000541764 PCDH10Q9P2E7 1040 aa11.77□□□□□ -0.52
LMO3-227ENST00000541764 ABCA3Q99758 1704 aa11.77□□□□□ -0.53
LMO3-227ENST00000541764 EYA2O00167 538 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 OFD1O75665 1012 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 MSNP26038 577 aaKnown RBP11.76□□□□□ -0.53
LMO3-227ENST00000541764 KRT85P78386 507 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 ZMYM1Q5SVZ6 1142 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 TOM1L2Q6ZVM7 507 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 CHMP4CQ96CF2 233 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 NEK1Q96PY6 1258 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 SCAND2PQ9GZW5 306 aaPredicted RBP11.76□□□□□ -0.53
LMO3-227ENST00000541764 ZKSCAN5Q9Y2L8 839 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 TCHHQ07283 1943 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 TTLL7Q6ZT98 887 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 GTF3C6Q969F1 213 aa11.76□□□□□ -0.53
LMO3-227ENST00000541764 LARP6Q9BRS8 491 aaKnown RBP11.76□□□□□ -0.53
LMO3-227ENST00000541764 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.76□□□□□ -0.53
LMO3-227ENST00000541764 FARP1Q9Y4F1 1045 aaPredicted RBP11.76□□□□□ -0.53
LMO3-227ENST00000541764 DNM1Q05193 864 aaKnown RBP11.75□□□□□ -0.53
LMO3-227ENST00000541764 TCIRG1Q13488 830 aa11.75□□□□□ -0.53
LMO3-227ENST00000541764 LRRFIP1Q32MZ4 808 aaKnown RBP11.75□□□□□ -0.53
LMO3-227ENST00000541764 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.75□□□□□ -0.53
LMO3-227ENST00000541764 NECAB1Q8N987 351 aa11.75□□□□□ -0.53
LMO3-227ENST00000541764 SMARCC2Q8TAQ2 1214 aa11.75□□□□□ -0.53
LMO3-227ENST00000541764 EDC3Q96F86 508 aaKnown RBP11.75□□□□□ -0.53
LMO3-227ENST00000541764 PAG1Q9NWQ8 432 aa11.75□□□□□ -0.53
LMO3-227ENST00000541764 TAF6LQ9Y6J9 622 aa11.75□□□□□ -0.53
LMO3-227ENST00000541764 FIBPO43427 364 aa11.74□□□□□ -0.53
LMO3-227ENST00000541764 PFKFB2O60825 505 aa11.74□□□□□ -0.53
LMO3-227ENST00000541764 PCCAP05165 728 aaPredicted RBP11.74□□□□□ -0.53
LMO3-227ENST00000541764 TPM2P07951 284 aa11.74□□□□□ -0.53
LMO3-227ENST00000541764 CYP21A2P08686 494 aa11.74□□□□□ -0.53
LMO3-227ENST00000541764 PIP4K2AP48426 406 aaPredicted RBP11.74□□□□□ -0.53
LMO3-227ENST00000541764 MKRN4PQ13434 485 aaPredicted RBP11.74□□□□□ -0.53
LMO3-227ENST00000541764 RGS22Q8NE09 1264 aa11.74□□□□□ -0.53
LMO3-227ENST00000541764 ZSCAN16Q9H4T2 348 aaPredicted RBP11.74□□□□□ -0.53
LMO3-227ENST00000541764 SLAIN2Q9P270 581 aa11.74□□□□□ -0.53
LMO3-227ENST00000541764 VPS37CA5D8V6 355 aaPredicted RBP11.73□□□□□ -0.53
LMO3-227ENST00000541764 A1BGP04217 495 aa11.73□□□□□ -0.53
LMO3-227ENST00000541764 CSF1RP07333 972 aa11.73□□□□□ -0.53
LMO3-227ENST00000541764 ZFYP08048 801 aaPredicted RBP11.73□□□□□ -0.53
LMO3-227ENST00000541764 EXOSC10Q01780 885 aaKnown RBP11.73□□□□□ -0.53
LMO3-227ENST00000541764 COL9A3Q14050 684 aaPredicted RBP11.73□□□□□ -0.53
LMO3-227ENST00000541764 ATL3Q6DD88 541 aa11.73□□□□□ -0.53
LMO3-227ENST00000541764 RBM43Q6ZSC3 357 aaKnown RBP11.73□□□□□ -0.53
LMO3-227ENST00000541764 DHX32Q7L7V1 743 aaKnown RBP11.73□□□□□ -0.53
LMO3-227ENST00000541764 JARID2Q92833 1246 aaPredicted RBP11.73□□□□□ -0.53
LMO3-227ENST00000541764 AKAP2Q9Y2D5 859 aa11.73□□□□□ -0.53
LMO3-227ENST00000541764 CDHR2Q9BYE9 1310 aa11.73□□□□□ -0.53
LMO3-227ENST00000541764 RNF113AO15541 343 aaKnown RBP11.72□□□□□ -0.53
LMO3-227ENST00000541764 EVCP57679 992 aa11.72□□□□□ -0.53
LMO3-227ENST00000541764 HMGN5P82970 282 aaKnown RBP11.72□□□□□ -0.53
LMO3-227ENST00000541764 FOXD4L6Q3SYB3 417 aaPredicted RBP11.72□□□□□ -0.53
LMO3-227ENST00000541764 NAA16Q6N069 864 aaPredicted RBP11.72□□□□□ -0.53
LMO3-227ENST00000541764 FOXD4L3Q6VB84 417 aaPredicted RBP11.72□□□□□ -0.53
LMO3-227ENST00000541764 CDC37L1Q7L3B6 337 aa11.72□□□□□ -0.53
LMO3-227ENST00000541764 TTC6Q86TZ1 520 aa11.72□□□□□ -0.53
LMO3-227ENST00000541764 DNAJC2Q99543 621 aaKnown RBP11.72□□□□□ -0.53
LMO3-227ENST00000541764 LRP6O75581 1613 aa11.72□□□□□ -0.53
LMO3-227ENST00000541764 NHSL1Q5SYE7 1610 aa11.72□□□□□ -0.53
LMO3-227ENST00000541764 TOGARAM1Q9Y4F4 1720 aa11.72□□□□□ -0.53
LMO3-227ENST00000541764 RESTQ13127 1097 aa11.71□□□□□ -0.53
LMO3-227ENST00000541764 Q6ZUG5 572 aa11.71□□□□□ -0.53
LMO3-227ENST00000541764 DDX46Q7L014 1031 aaKnown RBP11.71□□□□□ -0.53
LMO3-227ENST00000541764 RNF214Q8ND24 703 aa11.71□□□□□ -0.53
LMO3-227ENST00000541764 ZNF274Q96GC6 653 aaPredicted RBP11.71□□□□□ -0.53
LMO3-227ENST00000541764 ZNF512BQ96KM6 892 aaPredicted RBP11.71□□□□□ -0.53
LMO3-227ENST00000541764 NAP1L5Q96NT1 182 aaPredicted RBP11.71□□□□□ -0.53
LMO3-227ENST00000541764 SEC62Q99442 399 aaKnown RBP11.71□□□□□ -0.53
LMO3-227ENST00000541764 DDX19AQ9NUU7 478 aaKnown RBP11.71□□□□□ -0.53
LMO3-227ENST00000541764 CEP126Q9P2H0 1117 aa11.71□□□□□ -0.53
LMO3-227ENST00000541764 KIF3AQ9Y496 699 aa11.71□□□□□ -0.53
LMO3-227ENST00000541764 STRCQ7RTU9 1775 aa11.7□□□□□ -0.54
LMO3-227ENST00000541764 A0A1B0GUL7 405 aa11.7□□□□□ -0.54
LMO3-227ENST00000541764 GOLIM4O00461 696 aa11.7□□□□□ -0.54
LMO3-227ENST00000541764 KDM4AO75164 1064 aa11.7□□□□□ -0.54
LMO3-227ENST00000541764 IFIT1P09914 478 aaKnown RBP11.7□□□□□ -0.54
LMO3-227ENST00000541764 CCDC192P0DO97 292 aa11.7□□□□□ -0.54
LMO3-227ENST00000541764 HSPD1P10809 573 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms