RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 IL16Q14005 1332 aa10.74□□□□□ -0.69
CHD4-208ENST00000540960 KDM3BQ7LBC6 1761 aa10.74□□□□□ -0.69
CHD4-208ENST00000540960 ZNF609O15014 1411 aa10.74□□□□□ -0.69
CHD4-208ENST00000540960 MUC3AQ02505 3323 aa10.73□□□□□ -0.69
CHD4-208ENST00000540960 PPEF1O14829 653 aaPredicted RBP10.73□□□□□ -0.69
CHD4-208ENST00000540960 PRAMEF18Q5VWM3 479 aa10.73□□□□□ -0.69
CHD4-208ENST00000540960 EFCC1Q9HA90 598 aa10.73□□□□□ -0.69
CHD4-208ENST00000540960 PSMD14O00487 310 aa10.72□□□□□ -0.69
CHD4-208ENST00000540960 HOXA10P31260 410 aaPredicted RBP10.72□□□□□ -0.69
CHD4-208ENST00000540960 GRIPAP1Q4V328 841 aa10.72□□□□□ -0.69
CHD4-208ENST00000540960 GPR153Q6NV75 609 aa10.72□□□□□ -0.69
CHD4-208ENST00000540960 WWC1Q8IX03 1113 aa10.72□□□□□ -0.69
CHD4-208ENST00000540960 TRMT2AQ8IZ69 625 aaKnown RBP10.72□□□□□ -0.69
CHD4-208ENST00000540960 DPF2Q92785 391 aa10.72□□□□□ -0.69
CHD4-208ENST00000540960 SALL2Q9Y467 1007 aaPredicted RBP10.72□□□□□ -0.69
CHD4-208ENST00000540960 PTCH2Q9Y6C5 1203 aa10.72□□□□□ -0.69
CHD4-208ENST00000540960 MS4A1P11836 297 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 KIAA2012Q0VF49 1180 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 SREBF2Q12772 1141 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 AAMPQ13685 434 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 SLC9C1Q4G0N8 1177 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 CLEC4GQ6UXB4 293 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 C3orf67Q6ZVT6 689 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 CCDC146Q8IYE0 955 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 ERO1AQ96HE7 468 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 RTFDC1Q9BY42 306 aaPredicted RBP10.71□□□□□ -0.69
CHD4-208ENST00000540960 VPS33BQ9H267 617 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 KCNQ5Q9NR82 932 aa10.71□□□□□ -0.69
CHD4-208ENST00000540960 PRUNE2Q8WUY3 3088 aa10.71□□□□□ -0.7
CHD4-208ENST00000540960 GTF2E1P29083 439 aaPredicted RBP10.7□□□□□ -0.7
CHD4-208ENST00000540960 RRP1P56182 461 aaKnown RBP10.7□□□□□ -0.7
CHD4-208ENST00000540960 FKBP1BP68106 108 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 HLFQ16534 295 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 KIF4BQ2VIQ3 1234 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 ANGEL2Q5VTE6 544 aaKnown RBP10.7□□□□□ -0.7
CHD4-208ENST00000540960 DUSP27Q5VZP5 1158 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 UBE2Q1Q7Z7E8 422 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 SH3TC2Q8TF17 1288 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 RPGRQ92834 1020 aaKnown RBP10.7□□□□□ -0.7
CHD4-208ENST00000540960 ZNF428Q96B54 188 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 SNX27Q96L92 541 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 TAF1P21675 1872 aa10.7□□□□□ -0.7
CHD4-208ENST00000540960 HEG1Q9ULI3 1381 aa10.69□□□□□ -0.7
CHD4-208ENST00000540960 IGF2BP3O00425 579 aaKnown RBP eCLIP10.69□□□□□ -0.7
CHD4-208ENST00000540960 PTPN12Q05209 780 aaKnown RBP10.69□□□□□ -0.7
CHD4-208ENST00000540960 IFNL1Q8IU54 200 aa10.69□□□□□ -0.7
CHD4-208ENST00000540960 GUCD1Q96NT3 240 aa10.69□□□□□ -0.7
CHD4-208ENST00000540960 CRAMP1Q96RY5 1269 aa10.69□□□□□ -0.7
CHD4-208ENST00000540960 ATP6V0A2Q9Y487 856 aa10.69□□□□□ -0.7
CHD4-208ENST00000540960 NR2E3Q9Y5X4 410 aa10.69□□□□□ -0.7
CHD4-208ENST00000540960 ZSWIM8A7E2V4 1837 aa10.69□□□□□ -0.7
CHD4-208ENST00000540960 COL3A1P02461 1466 aaPredicted RBP10.68□□□□□ -0.7
CHD4-208ENST00000540960 RIC1Q4ADV7 1423 aa10.68□□□□□ -0.7
CHD4-208ENST00000540960 IL13P35225 146 aa10.68□□□□□ -0.7
CHD4-208ENST00000540960 TMPOP42166 694 aaKnown RBP10.68□□□□□ -0.7
CHD4-208ENST00000540960 BCAMP50895 628 aa10.68□□□□□ -0.7
CHD4-208ENST00000540960 MTFR1Q15390 333 aa10.68□□□□□ -0.7
CHD4-208ENST00000540960 SULT6B1Q6IMI4 303 aa10.68□□□□□ -0.7
CHD4-208ENST00000540960 NPM2Q86SE8 214 aaKnown RBP10.68□□□□□ -0.7
CHD4-208ENST00000540960 NBPF11Q86T75 865 aa10.68□□□□□ -0.7
CHD4-208ENST00000540960 PLEKHF1Q96S99 279 aa10.68□□□□□ -0.7
CHD4-208ENST00000540960 RPTORQ8N122 1335 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 ALPK3Q96L96 1907 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 ALDH1A1P00352 501 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 CRHR2Q13324 411 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 SCARF1Q14162 830 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 TTLL12Q14166 644 aaPredicted RBP10.67□□□□□ -0.7
CHD4-208ENST00000540960 SPRYD7Q5W111 196 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 PPP4R3CPQ6ZMV5 832 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 TTC5Q8N0Z6 440 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 CDCA7LQ96GN5 454 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 RBM17Q96I25 401 aaKnown RBP10.67□□□□□ -0.7
CHD4-208ENST00000540960 USP16Q9Y5T5 823 aa10.67□□□□□ -0.7
CHD4-208ENST00000540960 LAMA2P24043 3122 aaKnown RBP10.67□□□□□ -0.7
CHD4-208ENST00000540960 RTL9Q8NET4 1388 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 TMEM265A0A087WTH1 108 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 RIPK4P57078 832 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 SP3Q02447 781 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 NFE2L2Q16236 605 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 DPP8Q6V1X1 898 aaPredicted RBP10.66□□□□□ -0.7
CHD4-208ENST00000540960 SUPT20HQ8NEM7 779 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 HTATIP2Q9BUP3 242 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 TEX13AQ9BXU3 409 aaPredicted RBP10.66□□□□□ -0.7
CHD4-208ENST00000540960 RSPH6AQ9H0K4 717 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 DBNDD1Q9H9R9 158 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.66□□□□□ -0.7
CHD4-208ENST00000540960 ZNF652Q9Y2D9 606 aa10.66□□□□□ -0.7
CHD4-208ENST00000540960 SCN9AQ15858 1988 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 KCNQ3O43525 872 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 ECM2O94769 699 aaPredicted RBP10.65□□□□□ -0.7
CHD4-208ENST00000540960 PRKAR2BP31323 418 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 MAP3K12Q12852 859 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 PRKG1Q13976 671 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 PDE3AQ14432 1141 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 ZNF790Q6PG37 636 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 CCDC136Q96JN2 1154 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 FAM161BQ96MY7 647 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 GDF15Q99988 308 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 CHMP4AQ9BY43 222 aa10.65□□□□□ -0.7
CHD4-208ENST00000540960 FZD1Q9UP38 647 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms