RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 KAZALD1Q96I82 304 aa18.01■□□□□ 0.47
USP28-209ENST00000540925 HACL1Q9UJ83 578 aa18.01■□□□□ 0.47
USP28-209ENST00000540925 SPEF2Q9C093 1822 aa18■□□□□ 0.47
USP28-209ENST00000540925 WASHC4Q2M389 1173 aa18■□□□□ 0.47
USP28-209ENST00000540925 MINPP1Q9UNW1 487 aa18■□□□□ 0.47
USP28-209ENST00000540925 XDHP47989 1333 aa17.99■□□□□ 0.47
USP28-209ENST00000540925 C6orf229H3BNL8 230 aa17.99■□□□□ 0.47
USP28-209ENST00000540925 RARSP54136 660 aaKnown RBP17.99■□□□□ 0.47
USP28-209ENST00000540925 GPR101Q96P66 508 aaPredicted RBP17.99■□□□□ 0.47
USP28-209ENST00000540925 SMC4Q9NTJ3 1288 aa17.99■□□□□ 0.47
USP28-209ENST00000540925 GGA1Q9UJY5 639 aa17.99■□□□□ 0.47
USP28-209ENST00000540925 WTIPA6NIX2 430 aaPredicted RBP17.98■□□□□ 0.47
USP28-209ENST00000540925 UFL1O94874 794 aa17.98■□□□□ 0.47
USP28-209ENST00000540925 NBPF7P0C2Y1 421 aaPredicted RBP17.98■□□□□ 0.47
USP28-209ENST00000540925 EPHX2P34913 555 aa17.98■□□□□ 0.47
USP28-209ENST00000540925 EYA3Q99504 573 aa17.98■□□□□ 0.47
USP28-209ENST00000540925 ANKIB1Q9P2G1 1089 aa17.98■□□□□ 0.47
USP28-209ENST00000540925 GJA3Q9Y6H8 435 aa17.98■□□□□ 0.47
USP28-209ENST00000540925 SCN9AQ15858 1988 aa17.97■□□□□ 0.47
USP28-209ENST00000540925 CIAPIN1Q6FI81 312 aa17.97■□□□□ 0.47
USP28-209ENST00000540925 CHADLQ6NUI6 762 aa17.97■□□□□ 0.47
USP28-209ENST00000540925 LMBR1LQ6UX01 489 aa17.97■□□□□ 0.47
USP28-209ENST00000540925 LDHDQ86WU2 507 aa17.97■□□□□ 0.47
USP28-209ENST00000540925 C9orf78Q9NZ63 289 aaPredicted RBP17.97■□□□□ 0.47
USP28-209ENST00000540925 RIMBP2O15034 1052 aa17.96■□□□□ 0.47
USP28-209ENST00000540925 ATP2B4P23634 1241 aa17.96■□□□□ 0.47
USP28-209ENST00000540925 EPS15P42566 896 aa17.96■□□□□ 0.47
USP28-209ENST00000540925 HNRNPUQ00839 825 aaKnown RBP eCLIP17.96■□□□□ 0.47
USP28-209ENST00000540925 RABL6Q3YEC7 729 aaPredicted RBP17.96■□□□□ 0.47
USP28-209ENST00000540925 PNMA8AQ86V59 439 aaPredicted RBP17.96■□□□□ 0.47
USP28-209ENST00000540925 SUCLG2Q96I99 432 aa17.96■□□□□ 0.47
USP28-209ENST00000540925 DBNDD1Q9H9R9 158 aa17.96■□□□□ 0.47
USP28-209ENST00000540925 GPRC5DQ9NZD1 345 aa17.96■□□□□ 0.47
USP28-209ENST00000540925 A0A1B0GUL6 1792 aa17.96■□□□□ 0.47
USP28-209ENST00000540925 MED23Q9ULK4 1368 aa17.95■□□□□ 0.46
USP28-209ENST00000540925 ANKRD18BA2A2Z9 1011 aa17.95■□□□□ 0.46
USP28-209ENST00000540925 ECE2O60344 883 aa17.95■□□□□ 0.46
USP28-209ENST00000540925 RAD17O75943 681 aa17.95■□□□□ 0.46
USP28-209ENST00000540925 IGHMBP2P38935 993 aaKnown RBP17.95■□□□□ 0.46
USP28-209ENST00000540925 GMPSP49915 693 aaPredicted RBP17.95■□□□□ 0.46
USP28-209ENST00000540925 TNIP1Q15025 636 aa17.95■□□□□ 0.46
USP28-209ENST00000540925 COL13A1Q5TAT6 717 aaPredicted RBP17.95■□□□□ 0.46
USP28-209ENST00000540925 USP44Q9H0E7 712 aa17.95■□□□□ 0.46
USP28-209ENST00000540925 KCNQ5Q9NR82 932 aa17.95■□□□□ 0.46
USP28-209ENST00000540925 ZNF609O15014 1411 aa17.95■□□□□ 0.46
USP28-209ENST00000540925 PSME4Q14997 1843 aa17.94■□□□□ 0.46
USP28-209ENST00000540925 CCT4P50991 539 aaKnown RBP17.94■□□□□ 0.46
USP28-209ENST00000540925 IFIT5Q13325 482 aaKnown RBP17.94■□□□□ 0.46
USP28-209ENST00000540925 DOK7Q18PE1 504 aa17.94■□□□□ 0.46
USP28-209ENST00000540925 ZC3H12CQ9C0D7 883 aaKnown RBP17.94■□□□□ 0.46
USP28-209ENST00000540925 NOB1Q9ULX3 412 aaKnown RBP17.94■□□□□ 0.46
USP28-209ENST00000540925 ZBED9Q6R2W3 1325 aa17.94■□□□□ 0.46
USP28-209ENST00000540925 PASKQ96RG2 1323 aa17.94■□□□□ 0.46
USP28-209ENST00000540925 IRS2Q9Y4H2 1338 aa17.94■□□□□ 0.46
USP28-209ENST00000540925 ZNF646O15015 1829 aaPredicted RBP17.93■□□□□ 0.46
USP28-209ENST00000540925 PSMD14O00487 310 aa17.93■□□□□ 0.46
USP28-209ENST00000540925 ITGBL1O95965 494 aaPredicted RBP17.93■□□□□ 0.46
USP28-209ENST00000540925 ANKRD44Q8N8A2 993 aa17.93■□□□□ 0.46
USP28-209ENST00000540925 ARHGAP45Q92619 1136 aa17.93■□□□□ 0.46
USP28-209ENST00000540925 LMOD1P29536 600 aaPredicted RBP17.92■□□□□ 0.46
USP28-209ENST00000540925 CHRNDQ07001 517 aa17.92■□□□□ 0.46
USP28-209ENST00000540925 USP50Q70EL3 339 aaPredicted RBP17.92■□□□□ 0.46
USP28-209ENST00000540925 DPF2Q92785 391 aa17.92■□□□□ 0.46
USP28-209ENST00000540925 MPHOSPH8Q99549 860 aa17.92■□□□□ 0.46
USP28-209ENST00000540925 ANKRD2Q9GZV1 360 aa17.92■□□□□ 0.46
USP28-209ENST00000540925 LEMD3Q9Y2U8 911 aa17.92■□□□□ 0.46
USP28-209ENST00000540925 VIL1P09327 827 aaKnown RBP17.91■□□□□ 0.46
USP28-209ENST00000540925 EAPPQ56P03 285 aaPredicted RBP17.91■□□□□ 0.46
USP28-209ENST00000540925 TXNRD3Q86VQ6 643 aa17.91■□□□□ 0.46
USP28-209ENST00000540925 BICC1Q9H694 974 aaKnown RBP17.91■□□□□ 0.46
USP28-209ENST00000540925 ADARB2Q9NS39 739 aaKnown RBP17.91■□□□□ 0.46
USP28-209ENST00000540925 KIF16BQ96L93 1317 aa17.91■□□□□ 0.46
USP28-209ENST00000540925 RPS12P25398 132 aaKnown RBP17.9■□□□□ 0.46
USP28-209ENST00000540925 HTRA3P83110 453 aa17.9■□□□□ 0.46
USP28-209ENST00000540925 CCDC57Q2TAC2 916 aa17.9■□□□□ 0.46
USP28-209ENST00000540925 C15orf52Q6ZUT6 534 aaKnown RBP17.9■□□□□ 0.46
USP28-209ENST00000540925 PODNQ7Z5L7 613 aa17.9■□□□□ 0.46
USP28-209ENST00000540925 ZNF594Q96JF6 807 aaPredicted RBP17.9■□□□□ 0.46
USP28-209ENST00000540925 API5Q9BZZ5 524 aaKnown RBP17.9■□□□□ 0.46
USP28-209ENST00000540925 PGAP2Q9UHJ9 254 aa17.9■□□□□ 0.46
USP28-209ENST00000540925 ZBTB12Q9Y330 459 aaPredicted RBP17.9■□□□□ 0.46
USP28-209ENST00000540925 ZNF804BA4D1E1 1349 aa17.9■□□□□ 0.46
USP28-209ENST00000540925 SHTN1A0MZ66 631 aa17.89■□□□□ 0.45
USP28-209ENST00000540925 KLRK1P26718 216 aa17.89■□□□□ 0.45
USP28-209ENST00000540925 GMLQ99445 158 aa17.89■□□□□ 0.45
USP28-209ENST00000540925 CHMP3Q9Y3E7 222 aa17.89■□□□□ 0.45
USP28-209ENST00000540925 CAPN15O75808 1086 aa17.88■□□□□ 0.45
USP28-209ENST00000540925 BCAR3O75815 825 aa17.88■□□□□ 0.45
USP28-209ENST00000540925 HIRAP54198 1017 aaPredicted RBP17.88■□□□□ 0.45
USP28-209ENST00000540925 MAP1SQ66K74 1059 aaPredicted RBP17.88■□□□□ 0.45
USP28-209ENST00000540925 INTS3Q68E01 1043 aaKnown RBP17.88■□□□□ 0.45
USP28-209ENST00000540925 JMYQ8N9B5 988 aa17.88■□□□□ 0.45
USP28-209ENST00000540925 KLRG1Q96E93 195 aa17.88■□□□□ 0.45
USP28-209ENST00000540925 CNOT7Q9UIV1 285 aaKnown RBP17.88■□□□□ 0.45
USP28-209ENST00000540925 SNAP23O00161 211 aa17.87■□□□□ 0.45
USP28-209ENST00000540925 LDHAL6AQ6ZMR3 332 aa17.87■□□□□ 0.45
USP28-209ENST00000540925 MICALL2Q8IY33 904 aa17.87■□□□□ 0.45
USP28-209ENST00000540925 CNTROBQ8N137 903 aa17.87■□□□□ 0.45
USP28-209ENST00000540925 TRPM4Q8TD43 1214 aa17.87■□□□□ 0.45
USP28-209ENST00000540925 COA1Q9GZY4 146 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms