RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 GNAI1P63096 354 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 CCDC144BQ3MJ40 725 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 CCDC144CPQ8IYA2 1237 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 ZCRB1Q8TBF4 217 aaKnown RBP11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 TRIM5Q9C035 493 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 MBIPQ9NS73 344 aa11.12□□□□□ -0.63
CTNNA1-243ENST00000540387 IPO8O15397 1037 aaKnown RBP11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 PHKG2P15735 406 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 ACTN2P35609 894 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 LMAN1P49257 510 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 NBPF20Q3BBV1 942 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 NOL8Q76FK4 1167 aaKnown RBP11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 SIRT2Q8IXJ6 389 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 RNF217Q8TC41 542 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 USP21Q9UK80 565 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 SPATA31A1Q5TZJ5 1347 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 DLG5Q8TDM6 1919 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 EIF3CLB5ME19 914 aaKnown RBP11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 IRF6O14896 467 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 ATP6V1AP38606 617 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 POTEDQ86YR6 584 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 IFNL2Q8IZJ0 200 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 DDX54Q8TDD1 881 aaKnown RBP11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 PPM1EQ8WY54 764 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 EIF3CQ99613 913 aaKnown RBP11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 ARGLU1Q9NWB6 273 aaPredicted RBP11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 PSD3Q9NYI0 1048 aa11.11□□□□□ -0.63
CTNNA1-243ENST00000540387 BCL9LQ86UU0 1499 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 CHL1O00533 1208 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 RNMTO43148 476 aaKnown RBP11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 MAP2K2P36507 400 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 EXOC4Q96A65 974 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 L2HGDHQ9H9P8 463 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 TRMT1Q9NXH9 659 aaKnown RBP11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 CLIP2Q9UDT6 1046 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 OVOS2A0A0G2JMS6 1433 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 ZBTB7BO15156 539 aaPredicted RBP11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 SEC31AO94979 1220 aaKnown RBP11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 CASC1Q6TDU7 716 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 FILIP1Q7Z7B0 1213 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 ANKRD20A12PQ8NF67 263 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 SGSM3Q96HU1 749 aa11.1□□□□□ -0.63
CTNNA1-243ENST00000540387 SPATA31A5Q5VU36 1347 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 SPATA31A7Q8IWB4 1347 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 FIBPO43427 364 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 IVLP07476 585 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 SMC1AQ14683 1233 aaKnown RBP11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 MMS22LQ6ZRQ5 1243 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 LRRC8AQ8IWT6 810 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 CEP89Q96ST8 783 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 MRVI1Q9Y6F6 885 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 ELP1O95163 1332 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 ELL2O00472 640 aaPredicted RBP11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 ATP8B1O43520 1251 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 SASH3O75995 380 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 SDSP20132 328 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 CASTP20810 708 aaKnown RBP11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 ARID5BQ14865 1188 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 TAF7Q15545 349 aaPredicted RBP11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 FAM43BQ6ZT52 329 aaPredicted RBP11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 RAI14Q9P0K7 980 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 ADAM21Q9UKJ8 722 aa11.09□□□□□ -0.63
CTNNA1-243ENST00000540387 CEMIPQ8WUJ3 1361 aa11.08□□□□□ -0.63
CTNNA1-243ENST00000540387 MAP2K1Q02750 393 aaPredicted RBP11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 CBX8Q9HC52 389 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 TSPYL4Q9UJ04 414 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 SKILP12757 684 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 TYRO3Q06418 890 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 TEFQ10587 303 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 VPS72Q15906 364 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 KRT24Q2M2I5 525 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 CCDC93Q567U6 631 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 CCAR2Q8N163 923 aaKnown RBP11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 TSPYL6Q8N831 410 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 ORC3Q9UBD5 711 aaPredicted RBP11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 AFF2P51816 1311 aa11.08□□□□□ -0.64
CTNNA1-243ENST00000540387 PLCH1Q4KWH8 1693 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 KIF2AO00139 706 aaPredicted RBP11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 EXOC5O00471 708 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 ERC2O15083 957 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 TBC1D8O95759 1140 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 CORO7P57737 925 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 LEKR1Q6ZMV7 388 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 C16orf71Q8IYS4 520 aaPredicted RBP11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 C8orf58Q8NAV2 365 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 FBXO41Q8TF61 875 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 ZSCAN16Q9H4T2 348 aaPredicted RBP11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 THRAP3Q9Y2W1 955 aaKnown RBP11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 MCCP23508 829 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 FAM98CQ17RN3 349 aaKnown RBP11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 FOXR1Q6PIV2 292 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 CCDC34Q96HJ3 373 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.07□□□□□ -0.642e-6■■□□□ 12.8
CTNNA1-243ENST00000540387 PCDH11XQ9BZA7 1347 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 PCDH11YQ9BZA8 1340 aa11.07□□□□□ -0.64
CTNNA1-243ENST00000540387 NEMFO60524 1076 aa11.06□□□□□ -0.64
CTNNA1-243ENST00000540387 CPP00450 1065 aa11.06□□□□□ -0.64
CTNNA1-243ENST00000540387 ZSCAN22P10073 491 aaPredicted RBP11.06□□□□□ -0.64
CTNNA1-243ENST00000540387 DCAF5Q96JK2 942 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms