RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 RRAGDQ9NQL2 400 aaPredicted RBP11.75□□□□□ -0.53
TRAF1-202ENST00000540010 IFIT5Q13325 482 aaKnown RBP11.74□□□□□ -0.53
TRAF1-202ENST00000540010 DZIP3Q86Y13 1208 aaKnown RBP11.74□□□□□ -0.53
TRAF1-202ENST00000540010 TFIP11Q9UBB9 837 aaKnown RBP11.74□□□□□ -0.53
TRAF1-202ENST00000540010 ZBTB1Q9Y2K1 713 aa11.74□□□□□ -0.53
TRAF1-202ENST00000540010 IPO7O95373 1038 aaKnown RBP11.74□□□□□ -0.53
TRAF1-202ENST00000540010 SAFBQ15424 915 aaKnown RBP eCLIP11.74□□□□□ -0.53
TRAF1-202ENST00000540010 FAM98CQ17RN3 349 aaKnown RBP11.74□□□□□ -0.53
TRAF1-202ENST00000540010 ZSCAN23Q3MJ62 389 aa11.74□□□□□ -0.53
TRAF1-202ENST00000540010 PALD1Q9ULE6 856 aa11.74□□□□□ -0.53
TRAF1-202ENST00000540010 IL15P40933 162 aaPredicted RBP11.74□□□□□ -0.53
TRAF1-202ENST00000540010 ANAPC15P60006 121 aa11.74□□□□□ -0.53
TRAF1-202ENST00000540010 DBNDD2Q9BQY9 259 aa11.74□□□□□ -0.53
TRAF1-202ENST00000540010 PKD1L3Q7Z443 1732 aa11.74□□□□□ -0.53
TRAF1-202ENST00000540010 ROBO1Q9Y6N7 1651 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 PPFIA3O75145 1194 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 HCLS1P14317 486 aaPredicted RBP11.73□□□□□ -0.53
TRAF1-202ENST00000540010 SKIDA1Q1XH10 827 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 ZMYND15Q9H091 742 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 MAP3K11Q16584 847 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 RABL6Q3YEC7 729 aaPredicted RBP11.73□□□□□ -0.53
TRAF1-202ENST00000540010 SPATA31A1Q5TZJ5 1347 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 OLFM4Q6UX06 510 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 MAP3K15Q6ZN16 1313 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 PDCL2Q8N4E4 241 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 CNNM1Q9NRU3 951 aa11.73□□□□□ -0.53
TRAF1-202ENST00000540010 THRAP3Q9Y2W1 955 aaKnown RBP11.73□□□□□ -0.53
TRAF1-202ENST00000540010 SIPA1L3O60292 1781 aaPredicted RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 C5P01031 1676 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 TIMM10P62072 90 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 NMIQ13287 307 aaPredicted RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 PDCL3Q9H2J4 239 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 HOOK1Q9UJC3 728 aaKnown RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 MTMR7Q9Y216 660 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 NDUFB9Q9Y6M9 179 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 CRYBG1Q9Y4K1 1723 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 NHSL1Q5SYE7 1610 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 EYA2O00167 538 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 RRP12Q5JTH9 1297 aaKnown RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 EDC3Q96F86 508 aaKnown RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 TMX3Q96JJ7 454 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 DBNLQ9UJU6 430 aaKnown RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 ADAMTS7Q9UKP4 1686 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 USP42Q9H9J4 1324 aaKnown RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 SERPINC1P01008 464 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 FOXO4P98177 505 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 GIGYF2Q6Y7W6 1299 aaKnown RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 DDX46Q7L014 1031 aaKnown RBP11.72□□□□□ -0.53
TRAF1-202ENST00000540010 FAM227BQ96M60 508 aa11.72□□□□□ -0.53
TRAF1-202ENST00000540010 RAD50Q92878 1312 aa11.71□□□□□ -0.53
TRAF1-202ENST00000540010 CYP19A1P11511 503 aaPredicted RBP11.71□□□□□ -0.53
TRAF1-202ENST00000540010 CCDC158Q5M9N0 1113 aa11.71□□□□□ -0.53
TRAF1-202ENST00000540010 ZGPATQ8N5A5 531 aaKnown RBP11.71□□□□□ -0.53
TRAF1-202ENST00000540010 ANKRD20A12PQ8NF67 263 aa11.71□□□□□ -0.53
TRAF1-202ENST00000540010 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.71□□□□□ -0.53
TRAF1-202ENST00000540010 HLFQ16534 295 aa11.71□□□□□ -0.53
TRAF1-202ENST00000540010 METTL24Q5JXM2 366 aa11.71□□□□□ -0.53
TRAF1-202ENST00000540010 TTC39AQ5SRH9 613 aa11.71□□□□□ -0.53
TRAF1-202ENST00000540010 VPS53Q5VIR6 699 aa11.71□□□□□ -0.53
TRAF1-202ENST00000540010 ERICH2A1L162 156 aa11.71□□□□□ -0.54
TRAF1-202ENST00000540010 FKBP4Q02790 459 aaKnown RBP eCLIP11.71□□□□□ -0.54
TRAF1-202ENST00000540010 ANKRD1Q15327 319 aa11.71□□□□□ -0.54
TRAF1-202ENST00000540010 LRRC24Q50LG9 513 aa11.71□□□□□ -0.54
TRAF1-202ENST00000540010 ISCA1Q9BUE6 129 aa11.71□□□□□ -0.54
TRAF1-202ENST00000540010 GOLIM4O00461 696 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 IRS4O14654 1257 aaPredicted RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 ADCY5O95622 1261 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 PCCAP05165 728 aaPredicted RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 IFIT1P09914 478 aaKnown RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 RFX5P48382 616 aaPredicted RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 CCDC183Q5T5S1 534 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 LDHAL6AQ6ZMR3 332 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 ZBTB38Q8NAP3 1195 aaPredicted RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 C16orf45Q96MC5 204 aaPredicted RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 IL25Q9H293 177 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 HSPA4P34932 840 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 GUCY1B3Q02153 619 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 MAPK8IP2Q13387 824 aaPredicted RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 ZNF396Q96N95 335 aaPredicted RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 CCDC87Q9NVE4 849 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 AKAP2Q9Y2D5 859 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 ANKRD18BA2A2Z9 1011 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 ATP5JP18859 108 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 GIMAP6Q6P9H5 292 aa11.7□□□□□ -0.54
TRAF1-202ENST00000540010 ZSCAN31Q96LW9 406 aaPredicted RBP11.7□□□□□ -0.54
TRAF1-202ENST00000540010 LOC102724428A0A0B4J2F2 783 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 RAD21O60216 631 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 CASP7P55210 303 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 SIK1P57059 783 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 VPS37DQ86XT2 251 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 MARCH10Q8NA82 808 aaPredicted RBP11.69□□□□□ -0.54
TRAF1-202ENST00000540010 SMARCC1Q92922 1105 aaPredicted RBP11.69□□□□□ -0.54
TRAF1-202ENST00000540010 TCEANC2Q96MN5 208 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 LIMCH1Q9UPQ0 1083 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 PUS3Q9BZE2 481 aaKnown RBP11.69□□□□□ -0.54
TRAF1-202ENST00000540010 LSG1Q9H089 658 aaKnown RBP11.69□□□□□ -0.54
TRAF1-202ENST00000540010 BCL9O00512 1426 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 A0A1B0GUL7 405 aa11.69□□□□□ -0.54
TRAF1-202ENST00000540010 IL6STP40189 918 aaPredicted RBP11.69□□□□□ -0.54
TRAF1-202ENST00000540010 HSP90B2PQ58FF3 399 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms