RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 ATG9AQ7Z3C6 839 aa16.26■□□□□ 0.19
CCDC42-202ENST00000539522 ANKRD18AQ8IVF6 992 aa16.26■□□□□ 0.19
CCDC42-202ENST00000539522 SSH3Q8TE77 659 aa16.26■□□□□ 0.19
CCDC42-202ENST00000539522 BSDC1Q9NW68 430 aaPredicted RBP16.26■□□□□ 0.19
CCDC42-202ENST00000539522 RIPOR2Q9Y4F9 1068 aa16.26■□□□□ 0.19
CCDC42-202ENST00000539522 ZNF646O15015 1829 aaPredicted RBP16.26■□□□□ 0.19
CCDC42-202ENST00000539522 IRS2Q9Y4H2 1338 aa16.25■□□□□ 0.19
CCDC42-202ENST00000539522 SNAP23O00161 211 aa16.25■□□□□ 0.19
CCDC42-202ENST00000539522 SRGAP3O43295 1099 aa16.25■□□□□ 0.19
CCDC42-202ENST00000539522 GPR162Q16538 588 aa16.25■□□□□ 0.19
CCDC42-202ENST00000539522 CCDC57Q2TAC2 916 aa16.25■□□□□ 0.19
CCDC42-202ENST00000539522 CDC5LQ99459 802 aaKnown RBP16.25■□□□□ 0.19
CCDC42-202ENST00000539522 VGLL2Q8N8G2 317 aa16.24■□□□□ 0.19
CCDC42-202ENST00000539522 GPR101Q96P66 508 aaPredicted RBP16.24■□□□□ 0.19
CCDC42-202ENST00000539522 COPRSQ9NQ92 184 aa16.24■□□□□ 0.19
CCDC42-202ENST00000539522 POLLQ9UGP5 575 aa16.24■□□□□ 0.19
CCDC42-202ENST00000539522 TIAM2Q8IVF5 1701 aa16.23■□□□□ 0.19
CCDC42-202ENST00000539522 CCDC93Q567U6 631 aa16.23■□□□□ 0.19
CCDC42-202ENST00000539522 RTFDC1Q9BY42 306 aaPredicted RBP16.23■□□□□ 0.19
CCDC42-202ENST00000539522 PODXL2Q9NZ53 605 aa16.23■□□□□ 0.19
CCDC42-202ENST00000539522 LTBP3Q9NS15 1303 aa16.22■□□□□ 0.19
CCDC42-202ENST00000539522 KLRK1P26718 216 aa16.22■□□□□ 0.19
CCDC42-202ENST00000539522 CHRNDQ07001 517 aa16.22■□□□□ 0.19
CCDC42-202ENST00000539522 ARHGAP27Q6ZUM4 889 aa16.22■□□□□ 0.19
CCDC42-202ENST00000539522 TMC4Q7Z404 712 aa16.22■□□□□ 0.19
CCDC42-202ENST00000539522 HELBQ8NG08 1087 aaPredicted RBP16.22■□□□□ 0.19
CCDC42-202ENST00000539522 ARAP2Q8WZ64 1704 aa16.22■□□□□ 0.19
CCDC42-202ENST00000539522 CHD4Q14839 1912 aa16.21■□□□□ 0.19
CCDC42-202ENST00000539522 EYA2O00167 538 aa16.21■□□□□ 0.19
CCDC42-202ENST00000539522 TAF5LO75529 589 aa16.21■□□□□ 0.19
CCDC42-202ENST00000539522 IGHMBP2P38935 993 aaKnown RBP16.21■□□□□ 0.19
CCDC42-202ENST00000539522 LDHAL6AQ6ZMR3 332 aa16.21■□□□□ 0.19
CCDC42-202ENST00000539522 TBC1D16Q8TBP0 767 aa16.21■□□□□ 0.19
CCDC42-202ENST00000539522 PSMD1Q99460 953 aa16.21■□□□□ 0.19
CCDC42-202ENST00000539522 SIL1Q9H173 461 aa16.21■□□□□ 0.19
CCDC42-202ENST00000539522 SASH1O94885 1247 aa16.2■□□□□ 0.18
CCDC42-202ENST00000539522 FKBP4Q02790 459 aaKnown RBP eCLIP16.2■□□□□ 0.18
CCDC42-202ENST00000539522 CC2D2BQ6DHV5 1058 aa16.2■□□□□ 0.18
CCDC42-202ENST00000539522 TXNRD3Q86VQ6 643 aa16.2■□□□□ 0.18
CCDC42-202ENST00000539522 ZNF277Q9NRM2 450 aaPredicted RBP16.2■□□□□ 0.18
CCDC42-202ENST00000539522 NSFL1CQ9UNZ2 370 aaKnown RBP16.2■□□□□ 0.18
CCDC42-202ENST00000539522 HDAC5Q9UQL6 1122 aa16.2■□□□□ 0.18
CCDC42-202ENST00000539522 NOP58Q9Y2X3 529 aaKnown RBP16.2■□□□□ 0.18
CCDC42-202ENST00000539522 SCN9AQ15858 1988 aa16.2■□□□□ 0.18
CCDC42-202ENST00000539522 CIAO1O76071 339 aa16.19■□□□□ 0.18
CCDC42-202ENST00000539522 RPAP2Q8IXW5 612 aaPredicted RBP16.19■□□□□ 0.18
CCDC42-202ENST00000539522 RTKN2Q8IZC4 609 aa16.19■□□□□ 0.18
CCDC42-202ENST00000539522 MPNDQ8N594 471 aa16.19■□□□□ 0.18
CCDC42-202ENST00000539522 MPHOSPH8Q99549 860 aa16.19■□□□□ 0.18
CCDC42-202ENST00000539522 GRIN3BO60391 1043 aa16.18■□□□□ 0.18
CCDC42-202ENST00000539522 SOGA3Q5TF21 947 aa16.18■□□□□ 0.18
CCDC42-202ENST00000539522 DPP8Q6V1X1 898 aaPredicted RBP16.18■□□□□ 0.18
CCDC42-202ENST00000539522 TAOK3Q9H2K8 898 aa16.18■□□□□ 0.18
CCDC42-202ENST00000539522 CNNM1Q9NRU3 951 aa16.18■□□□□ 0.18
CCDC42-202ENST00000539522 XDHP47989 1333 aa16.18■□□□□ 0.18
CCDC42-202ENST00000539522 FGFR2P21802 821 aa16.17■□□□□ 0.18
CCDC42-202ENST00000539522 TAF7LQ5H9L4 462 aa16.17■□□□□ 0.18
CCDC42-202ENST00000539522 PSME4Q14997 1843 aa16.17■□□□□ 0.18
CCDC42-202ENST00000539522 UFL1O94874 794 aa16.16■□□□□ 0.18
CCDC42-202ENST00000539522 PDE8BO95263 885 aa16.16■□□□□ 0.18
CCDC42-202ENST00000539522 AOC3Q16853 763 aa16.16■□□□□ 0.18
CCDC42-202ENST00000539522 FBXO3Q9UK99 471 aa16.16■□□□□ 0.18
CCDC42-202ENST00000539522 EXOC6BQ9Y2D4 811 aa16.16■□□□□ 0.18
CCDC42-202ENST00000539522 MROH5Q6ZUA9 1318 aa16.16■□□□□ 0.18
CCDC42-202ENST00000539522 IARSP41252 1262 aaKnown RBP16.15■□□□□ 0.18
CCDC42-202ENST00000539522 KIAA2012Q0VF49 1180 aa16.15■□□□□ 0.18
CCDC42-202ENST00000539522 TFCP2Q12800 502 aa16.15■□□□□ 0.18
CCDC42-202ENST00000539522 CHMP4BQ9H444 224 aaKnown RBP16.15■□□□□ 0.18
CCDC42-202ENST00000539522 PPP4R2Q9NY27 417 aa16.15■□□□□ 0.18
CCDC42-202ENST00000539522 ANKIB1Q9P2G1 1089 aa16.15■□□□□ 0.18
CCDC42-202ENST00000539522 ZNF804BA4D1E1 1349 aa16.15■□□□□ 0.18
CCDC42-202ENST00000539522 ZNF609O15014 1411 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 YDJCA8MPS7 323 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 SURF6O75683 361 aaKnown RBP16.14■□□□□ 0.17
CCDC42-202ENST00000539522 IGHDP01880 384 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 ATP2B4P23634 1241 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 IL15P40933 162 aaPredicted RBP16.14■□□□□ 0.17
CCDC42-202ENST00000539522 GRIPAP1Q4V328 841 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 METTL24Q5JXM2 366 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 C9orf131Q5VYM1 1079 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 ANKRD2Q9GZV1 360 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 GGA1Q9UJY5 639 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 LEMD3Q9Y2U8 911 aa16.14■□□□□ 0.17
CCDC42-202ENST00000539522 MED23Q9ULK4 1368 aa16.13■□□□□ 0.17
CCDC42-202ENST00000539522 C6orf229H3BNL8 230 aa16.13■□□□□ 0.17
CCDC42-202ENST00000539522 RIMBP2O15034 1052 aa16.13■□□□□ 0.17
CCDC42-202ENST00000539522 LMNB1P20700 586 aa16.13■□□□□ 0.17
CCDC42-202ENST00000539522 C15orf52Q6ZUT6 534 aaKnown RBP16.13■□□□□ 0.17
CCDC42-202ENST00000539522 KCNQ5Q9NR82 932 aa16.13■□□□□ 0.17
CCDC42-202ENST00000539522 DCTPP1Q9H773 170 aa16.12■□□□□ 0.17
CCDC42-202ENST00000539522 RNF181Q9P0P0 153 aa16.12■□□□□ 0.17
CCDC42-202ENST00000539522 PPIP5K2O43314 1243 aa16.11■□□□□ 0.17
CCDC42-202ENST00000539522 ADORA1P30542 326 aa16.11■□□□□ 0.17
CCDC42-202ENST00000539522 HDAC1Q13547 482 aaPredicted RBP16.11■□□□□ 0.17
CCDC42-202ENST00000539522 UBE4AQ14139 1066 aa16.11■□□□□ 0.17
CCDC42-202ENST00000539522 DOK7Q18PE1 504 aa16.11■□□□□ 0.17
CCDC42-202ENST00000539522 WASHC4Q2M389 1173 aa16.11■□□□□ 0.17
CCDC42-202ENST00000539522 ZNF541Q9H0D2 1346 aa16.11■□□□□ 0.17
CCDC42-202ENST00000539522 COL1A1P02452 1464 aaPredicted RBP16.1■□□□□ 0.17
CCDC42-202ENST00000539522 FZD9O00144 591 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms