RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 TAF5LO75529 589 aa24.75■■□□□ 1.55
SMPDL3A-203ENST00000539041 VPS53Q5VIR6 699 aa24.75■■□□□ 1.55
SMPDL3A-203ENST00000539041 GREM2Q9H772 168 aa24.75■■□□□ 1.55
SMPDL3A-203ENST00000539041 GOLIM4O00461 696 aa24.74■■□□□ 1.55
SMPDL3A-203ENST00000539041 SKOR2Q2VWA4 1001 aaPredicted RBP24.74■■□□□ 1.55
SMPDL3A-203ENST00000539041 MCMDC2Q4G0Z9 681 aa24.74■■□□□ 1.55
SMPDL3A-203ENST00000539041 HMG20BQ9P0W2 317 aa24.74■■□□□ 1.55
SMPDL3A-203ENST00000539041 LIMCH1Q9UPQ0 1083 aa24.74■■□□□ 1.55
SMPDL3A-203ENST00000539041 PSMA5P28066 241 aa24.73■■□□□ 1.55
SMPDL3A-203ENST00000539041 CCDC158Q5M9N0 1113 aa24.73■■□□□ 1.55
SMPDL3A-203ENST00000539041 RUFY3Q7L099 469 aa24.73■■□□□ 1.55
SMPDL3A-203ENST00000539041 AK7Q96M32 723 aa24.73■■□□□ 1.55
SMPDL3A-203ENST00000539041 PDRG1Q9NUG6 133 aa24.73■■□□□ 1.55
SMPDL3A-203ENST00000539041 ZDHHC9Q9Y397 364 aa24.73■■□□□ 1.55
SMPDL3A-203ENST00000539041 NHSQ6T4R5 1651 aa24.73■■□□□ 1.55
SMPDL3A-203ENST00000539041 KCNQ2O43526 872 aa24.72■■□□□ 1.55
SMPDL3A-203ENST00000539041 CPA1P15085 419 aa24.72■■□□□ 1.55
SMPDL3A-203ENST00000539041 XAGE2Q96GT9 111 aa24.72■■□□□ 1.55
SMPDL3A-203ENST00000539041 RIPOR2Q9Y4F9 1068 aa24.72■■□□□ 1.55
SMPDL3A-203ENST00000539041 CAMTA2O94983 1202 aa24.72■■□□□ 1.55
SMPDL3A-203ENST00000539041 TTC39AQ5SRH9 613 aa24.72■■□□□ 1.55
SMPDL3A-203ENST00000539041 USPL1Q5W0Q7 1092 aa24.72■■□□□ 1.55
SMPDL3A-203ENST00000539041 ABCC12Q96J65 1359 aa24.71■■□□□ 1.55
SMPDL3A-203ENST00000539041 METTL24Q5JXM2 366 aa24.71■■□□□ 1.55
SMPDL3A-203ENST00000539041 GORABQ5T7V8 394 aa24.71■■□□□ 1.55
SMPDL3A-203ENST00000539041 LDHAL6AQ6ZMR3 332 aa24.71■■□□□ 1.55
SMPDL3A-203ENST00000539041 HELLSQ9NRZ9 838 aa24.71■■□□□ 1.55
SMPDL3A-203ENST00000539041 MYO5AQ9Y4I1 1855 aaKnown RBP24.71■■□□□ 1.55
SMPDL3A-203ENST00000539041 ADORA1P30542 326 aa24.7■■□□□ 1.55
SMPDL3A-203ENST00000539041 FNBP4Q8N3X1 1017 aaPredicted RBP24.7■■□□□ 1.55
SMPDL3A-203ENST00000539041 SEC62Q99442 399 aaKnown RBP24.7■■□□□ 1.55
SMPDL3A-203ENST00000539041 SCN7AQ01118 1682 aa24.7■■□□□ 1.54
SMPDL3A-203ENST00000539041 TSGA10IPQ3SY00 556 aa24.7■■□□□ 1.54
SMPDL3A-203ENST00000539041 PARP10Q53GL7 1025 aa24.7■■□□□ 1.54
SMPDL3A-203ENST00000539041 SUSD4Q5VX71 490 aa24.7■■□□□ 1.54
SMPDL3A-203ENST00000539041 ZSCAN31Q96LW9 406 aaPredicted RBP24.7■■□□□ 1.54
SMPDL3A-203ENST00000539041 CNNM1Q9NRU3 951 aa24.7■■□□□ 1.54
SMPDL3A-203ENST00000539041 U3KPZ7 1027 aaPredicted RBP24.7■■□□□ 1.54
SMPDL3A-203ENST00000539041 SPATA31A6Q5VVP1 1343 aa24.69■■□□□ 1.54
SMPDL3A-203ENST00000539041 BRD1O95696 1058 aa24.69■■□□□ 1.54
SMPDL3A-203ENST00000539041 ATP2B3Q16720 1220 aa24.69■■□□□ 1.54
SMPDL3A-203ENST00000539041 CCDC129Q6ZRS4 1044 aa24.69■■□□□ 1.54
SMPDL3A-203ENST00000539041 CHGBP05060 677 aa24.68■■□□□ 1.54
SMPDL3A-203ENST00000539041 ZMYM1Q5SVZ6 1142 aa24.68■■□□□ 1.54
SMPDL3A-203ENST00000539041 UTP14AQ9BVJ6 771 aaKnown RBP24.68■■□□□ 1.54
SMPDL3A-203ENST00000539041 SBF2Q86WG5 1849 aa24.68■■□□□ 1.54
SMPDL3A-203ENST00000539041 TCHHQ07283 1943 aa24.68■■□□□ 1.54
SMPDL3A-203ENST00000539041 MCTP1Q6DN14 999 aa24.67■■□□□ 1.54
SMPDL3A-203ENST00000539041 KRT32Q14532 448 aa24.67■■□□□ 1.54
SMPDL3A-203ENST00000539041 BLOC1S2Q6QNY1 142 aa24.67■■□□□ 1.54
SMPDL3A-203ENST00000539041 GZF1Q9H116 711 aaPredicted RBP24.67■■□□□ 1.54
SMPDL3A-203ENST00000539041 SH2B1Q9NRF2 756 aaPredicted RBP24.67■■□□□ 1.54
SMPDL3A-203ENST00000539041 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.67■■□□□ 1.54
SMPDL3A-203ENST00000539041 TAF1LQ8IZX4 1826 aa24.67■■□□□ 1.54
SMPDL3A-203ENST00000539041 RNF113AO15541 343 aaKnown RBP24.66■■□□□ 1.54
SMPDL3A-203ENST00000539041 A0A1B0GUL6 1792 aa24.66■■□□□ 1.54
SMPDL3A-203ENST00000539041 LRRFIP1Q32MZ4 808 aaKnown RBP24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 VGLL2Q8N8G2 317 aa24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 ALDH8A1Q9H2A2 487 aaPredicted RBP24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 LY75O60449 1722 aa24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 LARGE1O95461 756 aa24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 RPS6KB1P23443 525 aa24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 LARP6Q9BRS8 491 aaKnown RBP24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 USP21Q9UK80 565 aa24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 ZNF652Q9Y2D9 606 aa24.65■■□□□ 1.54
SMPDL3A-203ENST00000539041 FKBP4Q02790 459 aaKnown RBP eCLIP24.64■■□□□ 1.53
SMPDL3A-203ENST00000539041 DSCC1Q9BVC3 393 aa24.64■■□□□ 1.53
SMPDL3A-203ENST00000539041 HSP90B1P14625 803 aaKnown RBP24.63■■□□□ 1.53
SMPDL3A-203ENST00000539041 ANKRD1Q15327 319 aa24.63■■□□□ 1.53
SMPDL3A-203ENST00000539041 LINC00116Q8NCU8 138 aa24.63■■□□□ 1.53
SMPDL3A-203ENST00000539041 NIP7Q9Y221 180 aaKnown RBP eCLIP24.63■■□□□ 1.53
SMPDL3A-203ENST00000539041 TAF6LQ9Y6J9 622 aa24.63■■□□□ 1.53
SMPDL3A-203ENST00000539041 DOCK2Q92608 1830 aa24.63■■□□□ 1.53
SMPDL3A-203ENST00000539041 FAM177BA6PVY3 158 aa24.62■■□□□ 1.53
SMPDL3A-203ENST00000539041 NTSR2O95665 410 aa24.62■■□□□ 1.53
SMPDL3A-203ENST00000539041 HCLS1P14317 486 aaPredicted RBP24.62■■□□□ 1.53
SMPDL3A-203ENST00000539041 MAST3O60307 1309 aa24.62■■□□□ 1.53
SMPDL3A-203ENST00000539041 MROH5Q6ZUA9 1318 aa24.62■■□□□ 1.53
SMPDL3A-203ENST00000539041 PDE8BO95263 885 aa24.62■■□□□ 1.53
SMPDL3A-203ENST00000539041 LMBRD1Q9NUN5 540 aa24.62■■□□□ 1.53
SMPDL3A-203ENST00000539041 SMC3Q9UQE7 1217 aa24.62■■□□□ 1.53
SMPDL3A-203ENST00000539041 CNTNAP4Q9C0A0 1308 aa24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 WDR33Q9C0J8 1336 aaKnown RBP24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 RTL9Q8NET4 1388 aa24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 ZFYP08048 801 aaPredicted RBP24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 SCARF1Q14162 830 aa24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 SLFNL1Q499Z3 407 aa24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 L1TD1Q5T7N2 865 aaKnown RBP24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 FOXD4L5Q5VV16 416 aaPredicted RBP24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 FOXD4L4Q8WXT5 416 aaPredicted RBP24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 ZNF512BQ96KM6 892 aaPredicted RBP24.61■■□□□ 1.53
SMPDL3A-203ENST00000539041 ZAP70P43403 619 aa24.6■■□□□ 1.53
SMPDL3A-203ENST00000539041 KLHL40Q2TBA0 621 aa24.6■■□□□ 1.53
SMPDL3A-203ENST00000539041 CCDC83Q8IWF9 413 aa24.6■■□□□ 1.53
SMPDL3A-203ENST00000539041 CYP21A2P08686 494 aa24.59■■□□□ 1.53
SMPDL3A-203ENST00000539041 ME3Q16798 604 aa24.59■■□□□ 1.53
SMPDL3A-203ENST00000539041 CLEC4GQ6UXB4 293 aa24.59■■□□□ 1.53
SMPDL3A-203ENST00000539041 NEK1Q96PY6 1258 aa24.59■■□□□ 1.53
SMPDL3A-203ENST00000539041 DDX49Q9Y6V7 483 aaKnown RBP24.59■■□□□ 1.53
SMPDL3A-203ENST00000539041 COL24A1Q17RW2 1714 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms