RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 MRC2Q9UBG0 1479 aa8.06□□□□□ -1.12
USP28-207ENST00000538475 VWDEQ8N2E2 1590 aa8.05□□□□□ -1.12
USP28-207ENST00000538475 GPR37L1O60883 481 aa8.05□□□□□ -1.12
USP28-207ENST00000538475 PRPF40AO75400 957 aaKnown RBP8.05□□□□□ -1.12
USP28-207ENST00000538475 MCM6Q14566 821 aa8.05□□□□□ -1.12
USP28-207ENST00000538475 Q6ZVU0 165 aa8.05□□□□□ -1.12
USP28-207ENST00000538475 MORC1Q86VD1 984 aa8.05□□□□□ -1.12
USP28-207ENST00000538475 ITPRIPQ8IWB1 547 aa8.05□□□□□ -1.12
USP28-207ENST00000538475 ZNF784Q8NCA9 323 aaPredicted RBP8.05□□□□□ -1.12
USP28-207ENST00000538475 USP26Q9BXU7 913 aa8.05□□□□□ -1.12
USP28-207ENST00000538475 TMEM63CQ9P1W3 806 aa8.05□□□□□ -1.12
USP28-207ENST00000538475 ARAP3Q8WWN8 1544 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 SYCP2Q9BX26 1530 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 CHD2O14647 1828 aaKnown RBP8.04□□□□□ -1.12
USP28-207ENST00000538475 SMTNL1A8MU46 457 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 BRD1O95696 1058 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 ANAPC15P60006 121 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 CBX1P83916 185 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 RELBQ01201 579 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 CUL4AQ13619 759 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 ATP2B3Q16720 1220 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 TMEM132AQ24JP5 1023 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 KIAA1524Q8TCG1 905 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 TIGD1Q96MW7 591 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 PRDM10Q9NQV6 1147 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 DDX41Q9UJV9 622 aaKnown RBP8.04□□□□□ -1.12
USP28-207ENST00000538475 PPLO60437 1756 aa8.04□□□□□ -1.12
USP28-207ENST00000538475 SSH2Q76I76 1423 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 FRMPD1Q5SYB0 1578 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 SYCE3A1L190 88 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 SOBPA7XYQ1 873 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 SLFNL1Q499Z3 407 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 CCDC183Q5T5S1 534 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 ZNF771Q7L3S4 317 aaPredicted RBP8.03□□□□□ -1.12
USP28-207ENST00000538475 CCDC125Q86Z20 511 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 AGBL1Q96MI9 1066 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 ESF1Q9H501 851 aaKnown RBP8.03□□□□□ -1.12
USP28-207ENST00000538475 CYLDQ9NQC7 956 aa8.03□□□□□ -1.12
USP28-207ENST00000538475 TULP2O00295 520 aa8.02□□□□□ -1.13
USP28-207ENST00000538475 TERTO14746 1132 aaKnown RBP8.02□□□□□ -1.13
USP28-207ENST00000538475 WFS1O76024 890 aa8.02□□□□□ -1.13
USP28-207ENST00000538475 TUBB4AP04350 444 aa8.02□□□□□ -1.13
USP28-207ENST00000538475 LCE2AQ5TA79 106 aaPredicted RBP8.02□□□□□ -1.13
USP28-207ENST00000538475 TMEM57Q8N5G2 664 aa8.02□□□□□ -1.13
USP28-207ENST00000538475 SSH1Q8WYL5 1049 aa8.02□□□□□ -1.13
USP28-207ENST00000538475 LNPKQ9C0E8 428 aa8.02□□□□□ -1.13
USP28-207ENST00000538475 CTNNA3Q9UI47 895 aa8.02□□□□□ -1.13
USP28-207ENST00000538475 ATP6V1DQ9Y5K8 247 aa8.02□□□□□ -1.13
USP28-207ENST00000538475 WDR33Q9C0J8 1336 aaKnown RBP8.02□□□□□ -1.13
USP28-207ENST00000538475 KIF20BQ96Q89 1820 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 FANCAO15360 1455 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 TTLL8A6PVC2 850 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 KIF2AO00139 706 aaPredicted RBP8.01□□□□□ -1.13
USP28-207ENST00000538475 ZBTB7BO15156 539 aaPredicted RBP8.01□□□□□ -1.13
USP28-207ENST00000538475 NEMFO60524 1076 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 CAVIN2O95810 425 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 SLFN14P0C7P3 912 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 MX1P20591 662 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 VAC14Q08AM6 782 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 DHX8Q14562 1220 aaKnown RBP8.01□□□□□ -1.13
USP28-207ENST00000538475 TTC22Q5TAA0 569 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 ANKRD45Q5TZF3 282 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 CTR9Q6PD62 1173 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.01□□□□□ -1.13
USP28-207ENST00000538475 KRT222Q8N1A0 295 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 SLC16A10Q8TF71 515 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 YY1AP1Q9H869 796 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 ZNF395Q9H8N7 513 aaPredicted RBP8.01□□□□□ -1.13
USP28-207ENST00000538475 EFCC1Q9HA90 598 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 FAM53CQ9NYF3 392 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 NXF1Q9UBU9 619 aaKnown RBP8.01□□□□□ -1.13
USP28-207ENST00000538475 NOB1Q9ULX3 412 aaKnown RBP8.01□□□□□ -1.13
USP28-207ENST00000538475 ZDHHC9Q9Y397 364 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 ARHGAP5Q13017 1502 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 NSD3Q9BZ95 1437 aa8.01□□□□□ -1.13
USP28-207ENST00000538475 ZCCHC11Q5TAX3 1644 aaKnown RBP8□□□□□ -1.13
USP28-207ENST00000538475 RTL1A6NKG5 1358 aa8□□□□□ -1.13
USP28-207ENST00000538475 DLG5Q8TDM6 1919 aa8□□□□□ -1.13
USP28-207ENST00000538475 SPINT1O43278 529 aa8□□□□□ -1.13
USP28-207ENST00000538475 RAD21O60216 631 aa8□□□□□ -1.13
USP28-207ENST00000538475 LILRA1O75019 489 aa8□□□□□ -1.13
USP28-207ENST00000538475 ADCY5O95622 1261 aa8□□□□□ -1.13
USP28-207ENST00000538475 ADH1AP07327 375 aa8□□□□□ -1.13
USP28-207ENST00000538475 MCCP23508 829 aa8□□□□□ -1.13
USP28-207ENST00000538475 ADD1P35611 737 aaKnown RBP8□□□□□ -1.13
USP28-207ENST00000538475 HNRNPMP52272 730 aaKnown RBP eCLIP8□□□□□ -1.13
USP28-207ENST00000538475 EXOSC9Q06265 439 aaKnown RBP8□□□□□ -1.13
USP28-207ENST00000538475 FLIIQ13045 1269 aa8□□□□□ -1.13
USP28-207ENST00000538475 IRF5Q13568 498 aa8□□□□□ -1.13
USP28-207ENST00000538475 TERF2Q15554 542 aa8□□□□□ -1.13
USP28-207ENST00000538475 WASHC4Q2M389 1173 aa8□□□□□ -1.13
USP28-207ENST00000538475 API5Q9BZZ5 524 aaKnown RBP8□□□□□ -1.13
USP28-207ENST00000538475 DCTPP1Q9H773 170 aa8□□□□□ -1.13
USP28-207ENST00000538475 POLMQ9NP87 494 aaPredicted RBP8□□□□□ -1.13
USP28-207ENST00000538475 TNNQ9UQP3 1299 aa8□□□□□ -1.13
USP28-207ENST00000538475 PCDHB11Q9Y5F2 797 aa8□□□□□ -1.13
USP28-207ENST00000538475 FAM135BQ49AJ0 1406 aa8□□□□□ -1.13
USP28-207ENST00000538475 SOS2Q07890 1332 aaPredicted RBP8□□□□□ -1.13
USP28-207ENST00000538475 COL3A1P02461 1466 aaPredicted RBP8□□□□□ -1.13
USP28-207ENST00000538475 N4BP2Q86UW6 1770 aaPredicted RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms