RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 PIM2Q9P1W9 311 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 AKAP2Q9Y2D5 859 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 RIPOR2Q9Y4F9 1068 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 CACNA1SQ13698 1873 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 ABCC12Q96J65 1359 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 ERC2O15083 957 aa11.53□□□□□ -0.56
CIITA-203ENST00000537380 SMARCA5O60264 1052 aaPredicted RBP11.53□□□□□ -0.56
CIITA-203ENST00000537380 GLRX3O76003 335 aaKnown RBP11.53□□□□□ -0.56
CIITA-203ENST00000537380 HCLS1P14317 486 aaPredicted RBP11.53□□□□□ -0.56
CIITA-203ENST00000537380 C8orf34Q49A92 452 aa11.53□□□□□ -0.56
CIITA-203ENST00000537380 ERFEQ4G0M1 354 aa11.53□□□□□ -0.56
CIITA-203ENST00000537380 SKAP1Q86WV1 359 aa11.53□□□□□ -0.56
CIITA-203ENST00000537380 C16orf71Q8IYS4 520 aaPredicted RBP11.53□□□□□ -0.56
CIITA-203ENST00000537380 CEP126Q9P2H0 1117 aa11.53□□□□□ -0.56
CIITA-203ENST00000537380 CHMP3Q9Y3E7 222 aa11.53□□□□□ -0.56
CIITA-203ENST00000537380 MROH5Q6ZUA9 1318 aa11.53□□□□□ -0.56
CIITA-203ENST00000537380 H0YIN7 160 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 ZBTB22O15209 634 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 NPHP1O15259 732 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 IFIT2P09913 472 aaKnown RBP11.52□□□□□ -0.57
CIITA-203ENST00000537380 SRGNP10124 158 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 GTF2E1P29083 439 aaPredicted RBP11.52□□□□□ -0.57
CIITA-203ENST00000537380 TNNI3KQ59H18 835 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 DALRD3Q5D0E6 543 aaKnown RBP11.52□□□□□ -0.57
CIITA-203ENST00000537380 TAF7LQ5H9L4 462 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 LDHAL6AQ6ZMR3 332 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 ARHGAP27Q6ZUM4 889 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 C2CD5Q86YS7 1000 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 CCDC24Q8N4L8 307 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 ECHDC1Q9NTX5 307 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 FPGT-TNNI3KV9GXZ4 949 aa11.52□□□□□ -0.57
CIITA-203ENST00000537380 SLX4Q8IY92 1834 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 SBF1O95248 1867 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 FER1L6Q2WGJ9 1857 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 APBB1O00213 710 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 TFCP2Q12800 502 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 CRY2Q49AN0 593 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 STYK1Q6J9G0 422 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 NUTM1Q86Y26 1132 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 TTLL6Q8N841 843 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 KLHDC4Q8TBB5 520 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 PI4K2BQ8TCG2 481 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 EAF2Q96CJ1 260 aaPredicted RBP11.51□□□□□ -0.57
CIITA-203ENST00000537380 SIL1Q9H173 461 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 IL1RAPL2Q9NP60 686 aa11.51□□□□□ -0.57
CIITA-203ENST00000537380 BSDC1Q9NW68 430 aaPredicted RBP11.51□□□□□ -0.57
CIITA-203ENST00000537380 GSPT1P15170 499 aaKnown RBP11.5□□□□□ -0.57
CIITA-203ENST00000537380 ATP5JP18859 108 aa11.5□□□□□ -0.57
CIITA-203ENST00000537380 HOXA10P31260 410 aaPredicted RBP11.5□□□□□ -0.57
CIITA-203ENST00000537380 IGHMBP2P38935 993 aaKnown RBP11.5□□□□□ -0.57
CIITA-203ENST00000537380 LRRC24Q50LG9 513 aa11.5□□□□□ -0.57
CIITA-203ENST00000537380 AACSQ86V21 672 aa11.5□□□□□ -0.57
CIITA-203ENST00000537380 VGLL2Q8N8G2 317 aa11.5□□□□□ -0.57
CIITA-203ENST00000537380 OTUD7AQ8TE49 926 aaPredicted RBP11.5□□□□□ -0.57
CIITA-203ENST00000537380 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.5□□□□□ -0.57
CIITA-203ENST00000537380 ZNF512BQ96KM6 892 aaPredicted RBP11.5□□□□□ -0.57
CIITA-203ENST00000537380 TSHZ2Q9NRE2 1034 aa11.5□□□□□ -0.57
CIITA-203ENST00000537380 FAM177BA6PVY3 158 aa11.49□□□□□ -0.57
CIITA-203ENST00000537380 PDE8BO95263 885 aa11.49□□□□□ -0.57
CIITA-203ENST00000537380 NPR1P16066 1061 aa11.49□□□□□ -0.57
CIITA-203ENST00000537380 TMC4Q7Z404 712 aa11.49□□□□□ -0.57
CIITA-203ENST00000537380 ANKRD18AQ8IVF6 992 aa11.49□□□□□ -0.57
CIITA-203ENST00000537380 MASTLQ96GX5 879 aa11.49□□□□□ -0.57
CIITA-203ENST00000537380 MPHOSPH8Q99549 860 aa11.49□□□□□ -0.57
CIITA-203ENST00000537380 ZNF609O15014 1411 aa11.49□□□□□ -0.57
CIITA-203ENST00000537380 EPB41L2O43491 1005 aaKnown RBP11.48□□□□□ -0.57
CIITA-203ENST00000537380 CDC45O75419 566 aa11.48□□□□□ -0.57
CIITA-203ENST00000537380 SDSP20132 328 aa11.48□□□□□ -0.57
CIITA-203ENST00000537380 FGFR2P21802 821 aa11.48□□□□□ -0.57
CIITA-203ENST00000537380 RPS8P62241 208 aaKnown RBP11.48□□□□□ -0.57
CIITA-203ENST00000537380 DDX46Q7L014 1031 aaKnown RBP11.48□□□□□ -0.57
CIITA-203ENST00000537380 CNKSR1Q969H4 720 aa11.48□□□□□ -0.57
CIITA-203ENST00000537380 ZNF594Q96JF6 807 aaPredicted RBP11.48□□□□□ -0.57
CIITA-203ENST00000537380 PUS3Q9BZE2 481 aaKnown RBP11.48□□□□□ -0.57
CIITA-203ENST00000537380 CNNM1Q9NRU3 951 aa11.48□□□□□ -0.57
CIITA-203ENST00000537380 SNED1Q8TER0 1413 aa11.47□□□□□ -0.57
CIITA-203ENST00000537380 RFX7Q2KHR2 1363 aa11.47□□□□□ -0.57
CIITA-203ENST00000537380 PUM3Q15397 648 aaKnown RBP11.47□□□□□ -0.57
CIITA-203ENST00000537380 METTL24Q5JXM2 366 aa11.47□□□□□ -0.57
CIITA-203ENST00000537380 PRPF40BQ6NWY9 871 aaKnown RBP11.47□□□□□ -0.57
CIITA-203ENST00000537380 CASC1Q6TDU7 716 aa11.47□□□□□ -0.57
CIITA-203ENST00000537380 LPIN2Q92539 896 aa11.47□□□□□ -0.57
CIITA-203ENST00000537380 ZNF622Q969S3 477 aaKnown RBP eCLIP11.47□□□□□ -0.57
CIITA-203ENST00000537380 CRAMP1Q96RY5 1269 aa11.47□□□□□ -0.57
CIITA-203ENST00000537380 DBNLQ9UJU6 430 aaKnown RBP11.47□□□□□ -0.57
CIITA-203ENST00000537380 DICER1Q9UPY3 1922 aaKnown RBP11.47□□□□□ -0.57
CIITA-203ENST00000537380 CCDC88AQ3V6T2 1871 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 SPEF2Q9C093 1822 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 A0A1B0GUL7 405 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 HIP1O00291 1037 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 BBOX1O75936 387 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 GRAPQ13588 217 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 UBE4AQ14139 1066 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 ATP2B3Q16720 1220 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 C3orf67Q6ZVT6 689 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 CNTROBQ8N137 903 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 GRAPLQ8TC17 118 aaPredicted RBP11.46□□□□□ -0.57
CIITA-203ENST00000537380 C7orf43Q8WVR3 580 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 EVI5LQ96CN4 794 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 ANKRD2Q9GZV1 360 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms