RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 NSFL1CQ9UNZ2 370 aaKnown RBP15.07■□□□□ 0
CHD4-203ENST00000535717 SBF1O95248 1867 aa15.06■□□□□ 0
CHD4-203ENST00000535717 SRGAP3O43295 1099 aa15.06■□□□□ 0
CHD4-203ENST00000535717 LMNB1P20700 586 aa15.06■□□□□ 0
CHD4-203ENST00000535717 LDHAL6AQ6ZMR3 332 aa15.06■□□□□ 0
CHD4-203ENST00000535717 PUS3Q9BZE2 481 aaKnown RBP15.06■□□□□ 0
CHD4-203ENST00000535717 ZNF277Q9NRM2 450 aaPredicted RBP15.06■□□□□ 0
CHD4-203ENST00000535717 PODXL2Q9NZ53 605 aa15.06■□□□□ 0
CHD4-203ENST00000535717 ANKIB1Q9P2G1 1089 aa15.06■□□□□ 0
CHD4-203ENST00000535717 DUOX1Q9NRD9 1551 aa15.06■□□□□ 0
CHD4-203ENST00000535717 LTBP1Q14766 1721 aa15.06■□□□□ 0
CHD4-203ENST00000535717 PNMA6EA0A0J9YXQ4 647 aa15.05■□□□□ -0
CHD4-203ENST00000535717 PTPN12Q05209 780 aaKnown RBP15.05■□□□□ -0
CHD4-203ENST00000535717 C9orf131Q5VYM1 1079 aa15.05■□□□□ -0
CHD4-203ENST00000535717 CHMP4BQ9H444 224 aaKnown RBP15.05■□□□□ -0
CHD4-203ENST00000535717 CNNM1Q9NRU3 951 aa15.05■□□□□ -0
CHD4-203ENST00000535717 POLLQ9UGP5 575 aa15.05■□□□□ -0
CHD4-203ENST00000535717 CHD4Q14839 1912 aa15.05■□□□□ -0
CHD4-203ENST00000535717 XDHP47989 1333 aa15.04■□□□□ -0
CHD4-203ENST00000535717 WTIPA6NIX2 430 aaPredicted RBP15.04■□□□□ -0
CHD4-203ENST00000535717 ATP8B2P98198 1209 aa15.04■□□□□ -0
CHD4-203ENST00000535717 CHRNDQ07001 517 aa15.04■□□□□ -0
CHD4-203ENST00000535717 LRRC24Q50LG9 513 aa15.04■□□□□ -0
CHD4-203ENST00000535717 CEP85Q6P2H3 762 aa15.04■□□□□ -0
CHD4-203ENST00000535717 HELBQ8NG08 1087 aaPredicted RBP15.04■□□□□ -0
CHD4-203ENST00000535717 TBC1D16Q8TBP0 767 aa15.04■□□□□ -0
CHD4-203ENST00000535717 CRBNQ96SW2 442 aa15.04■□□□□ -0
CHD4-203ENST00000535717 ANKRD2Q9GZV1 360 aa15.04■□□□□ -0
CHD4-203ENST00000535717 RNF181Q9P0P0 153 aa15.04■□□□□ -0
CHD4-203ENST00000535717 PA2G4Q9UQ80 394 aaKnown RBP15.04■□□□□ -0
CHD4-203ENST00000535717 RIPOR2Q9Y4F9 1068 aa15.04■□□□□ -0
CHD4-203ENST00000535717 CCDC88AQ3V6T2 1871 aa15.03■□□□□ -0
CHD4-203ENST00000535717 C6orf229H3BNL8 230 aa15.03■□□□□ -0
CHD4-203ENST00000535717 UFL1O94874 794 aa15.03■□□□□ -0
CHD4-203ENST00000535717 IARSP41252 1262 aaKnown RBP15.03■□□□□ -0
CHD4-203ENST00000535717 POLA2Q14181 598 aa15.03■□□□□ -0
CHD4-203ENST00000535717 SUPT20HQ8NEM7 779 aa15.03■□□□□ -0
CHD4-203ENST00000535717 GPR101Q96P66 508 aaPredicted RBP15.03■□□□□ -0
CHD4-203ENST00000535717 COPRSQ9NQ92 184 aa15.03■□□□□ -0
CHD4-203ENST00000535717 GGA1Q9UJY5 639 aa15.03■□□□□ -0
CHD4-203ENST00000535717 EYA2O00167 538 aa15.02■□□□□ -0
CHD4-203ENST00000535717 TAF5LO75529 589 aa15.02■□□□□ -0
CHD4-203ENST00000535717 ATP2B4P23634 1241 aa15.02■□□□□ -0
CHD4-203ENST00000535717 ATG9AQ7Z3C6 839 aa15.02■□□□□ -0
CHD4-203ENST00000535717 SSH3Q8TE77 659 aa15.02■□□□□ -0
CHD4-203ENST00000535717 SIL1Q9H173 461 aa15.02■□□□□ -0
CHD4-203ENST00000535717 A0A1B0GUL6 1792 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 MROH5Q6ZUA9 1318 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 COL4A5P29400 1685 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 SNAP23O00161 211 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 PPIP5K2O43314 1243 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 CIAO1O76071 339 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 AOC3Q16853 763 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 VPS33BQ9H267 617 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 FBXO3Q9UK99 471 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 LEMD3Q9Y2U8 911 aa15.01□□□□□ -0.01
CHD4-203ENST00000535717 DICER1Q9UPY3 1922 aaKnown RBP15□□□□□ -0.01
CHD4-203ENST00000535717 ZNF804BA4D1E1 1349 aa15□□□□□ -0.01
CHD4-203ENST00000535717 RIMBP2O15034 1052 aa15□□□□□ -0.01
CHD4-203ENST00000535717 KIAA2012Q0VF49 1180 aa15□□□□□ -0.01
CHD4-203ENST00000535717 WASHC4Q2M389 1173 aa15□□□□□ -0.01
CHD4-203ENST00000535717 METTL24Q5JXM2 366 aa15□□□□□ -0.01
CHD4-203ENST00000535717 SIRT2Q8IXJ6 389 aa15□□□□□ -0.01
CHD4-203ENST00000535717 RPAP2Q8IXW5 612 aaPredicted RBP15□□□□□ -0.01
CHD4-203ENST00000535717 LARGE2Q8N3Y3 721 aa15□□□□□ -0.01
CHD4-203ENST00000535717 VGLL2Q8N8G2 317 aa14.99□□□□□ -0.01
CHD4-203ENST00000535717 EYA3Q99504 573 aa14.99□□□□□ -0.01
CHD4-203ENST00000535717 ZC3H12CQ9C0D7 883 aaKnown RBP14.99□□□□□ -0.01
CHD4-203ENST00000535717 TIAM2Q8IVF5 1701 aa14.98□□□□□ -0.01
CHD4-203ENST00000535717 PDE8BO95263 885 aa14.98□□□□□ -0.01
CHD4-203ENST00000535717 KLRK1P26718 216 aa14.98□□□□□ -0.01
CHD4-203ENST00000535717 IL15P40933 162 aaPredicted RBP14.98□□□□□ -0.01
CHD4-203ENST00000535717 KCNJ4P48050 445 aa14.98□□□□□ -0.01
CHD4-203ENST00000535717 IRS2Q9Y4H2 1338 aa14.97□□□□□ -0.01
CHD4-203ENST00000535717 IRX6P78412 446 aaPredicted RBP14.97□□□□□ -0.01
CHD4-203ENST00000535717 DOK7Q18PE1 504 aa14.97□□□□□ -0.01
CHD4-203ENST00000535717 TXNRD3Q86VQ6 643 aa14.97□□□□□ -0.01
CHD4-203ENST00000535717 NIM1KQ8IY84 436 aa14.97□□□□□ -0.01
CHD4-203ENST00000535717 EXOC6Q8TAG9 804 aa14.97□□□□□ -0.01
CHD4-203ENST00000535717 JDP2Q8WYK2 163 aa14.97□□□□□ -0.01
CHD4-203ENST00000535717 NOP58Q9Y2X3 529 aaKnown RBP14.97□□□□□ -0.01
CHD4-203ENST00000535717 PCDHB15Q9Y5E8 787 aa14.97□□□□□ -0.01
CHD4-203ENST00000535717 MED23Q9ULK4 1368 aa14.97□□□□□ -0.01
CHD4-203ENST00000535717 ZC3H4Q9UPT8 1303 aaKnown RBP14.96□□□□□ -0.01
CHD4-203ENST00000535717 FZD9O00144 591 aa14.96□□□□□ -0.01
CHD4-203ENST00000535717 SURF6O75683 361 aaKnown RBP14.96□□□□□ -0.01
CHD4-203ENST00000535717 YY1P25490 414 aa14.96□□□□□ -0.01
CHD4-203ENST00000535717 G3BP1Q13283 466 aaKnown RBP eCLIP14.96□□□□□ -0.01
CHD4-203ENST00000535717 UBE4AQ14139 1066 aa14.96□□□□□ -0.01
CHD4-203ENST00000535717 C15orf52Q6ZUT6 534 aaKnown RBP14.96□□□□□ -0.01
CHD4-203ENST00000535717 CEP126Q9P2H0 1117 aa14.96□□□□□ -0.01
CHD4-203ENST00000535717 HMMRO75330 724 aa14.95□□□□□ -0.02
CHD4-203ENST00000535717 CENPBP07199 599 aaPredicted RBP14.95□□□□□ -0.02
CHD4-203ENST00000535717 FGFR2P21802 821 aa14.95□□□□□ -0.02
CHD4-203ENST00000535717 TFCP2Q12800 502 aa14.95□□□□□ -0.02
CHD4-203ENST00000535717 PUM3Q15397 648 aaKnown RBP14.95□□□□□ -0.02
CHD4-203ENST00000535717 DBNDD1Q9H9R9 158 aa14.95□□□□□ -0.02
CHD4-203ENST00000535717 ZNRF3Q9ULT6 936 aa14.95□□□□□ -0.02
CHD4-203ENST00000535717 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.95□□□□□ -0.02
CHD4-203ENST00000535717 ZNF541Q9H0D2 1346 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 474.2 ms