RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 CCDC8Q9H0W5 538 aaPredicted RBP22.47■■□□□ 1.19
SMPD1-210ENST00000534405 TLR7Q9NYK1 1049 aaKnown RBP22.47■■□□□ 1.19
SMPD1-210ENST00000534405 KDM6AO15550 1401 aaPredicted RBP22.46■■□□□ 1.19
SMPD1-210ENST00000534405 MYCNP04198 464 aaPredicted RBP22.46■■□□□ 1.19
SMPD1-210ENST00000534405 CWC15Q9P013 229 aaKnown RBP22.46■■□□□ 1.19
SMPD1-210ENST00000534405 LCMT1Q9UIC8 334 aa22.46■■□□□ 1.19
SMPD1-210ENST00000534405 C5P01031 1676 aa22.46■■□□□ 1.19
SMPD1-210ENST00000534405 GYS2P54840 703 aa22.46■■□□□ 1.19
SMPD1-210ENST00000534405 KLHDC4Q8TBB5 520 aa22.46■■□□□ 1.19
SMPD1-210ENST00000534405 RUFY2Q8WXA3 655 aa22.46■■□□□ 1.19
SMPD1-210ENST00000534405 C1orf167Q5SNV9 1468 aa22.45■■□□□ 1.18
SMPD1-210ENST00000534405 MYL6BP14649 208 aa22.45■■□□□ 1.18
SMPD1-210ENST00000534405 DDX54Q8TDD1 881 aaKnown RBP22.45■■□□□ 1.18
SMPD1-210ENST00000534405 EVI5LQ96CN4 794 aa22.45■■□□□ 1.18
SMPD1-210ENST00000534405 GPATCH3Q96I76 525 aa22.45■■□□□ 1.18
SMPD1-210ENST00000534405 FAM227BQ96M60 508 aa22.45■■□□□ 1.18
SMPD1-210ENST00000534405 DDX58O95786 925 aaKnown RBP22.45■■□□□ 1.18
SMPD1-210ENST00000534405 CLCN6P51797 869 aa22.45■■□□□ 1.18
SMPD1-210ENST00000534405 ZSCAN26Q16670 478 aa22.45■■□□□ 1.18
SMPD1-210ENST00000534405 SIL1Q9H173 461 aa22.45■■□□□ 1.18
SMPD1-210ENST00000534405 ZSCAN22P10073 491 aaPredicted RBP22.44■■□□□ 1.18
SMPD1-210ENST00000534405 COL9A3Q14050 684 aaPredicted RBP22.44■■□□□ 1.18
SMPD1-210ENST00000534405 PROSER2Q86WR7 435 aaPredicted RBP22.44■■□□□ 1.18
SMPD1-210ENST00000534405 CCDC191Q8NCU4 936 aa22.44■■□□□ 1.18
SMPD1-210ENST00000534405 JAKMIP1Q96N16 626 aaKnown RBP22.44■■□□□ 1.18
SMPD1-210ENST00000534405 LMTK3Q96Q04 1460 aa22.44■■□□□ 1.18
SMPD1-210ENST00000534405 ZRANB2O95218 330 aaKnown RBP eCLIP22.43■■□□□ 1.18
SMPD1-210ENST00000534405 SYT1P21579 422 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 RIC3Q7Z5B4 369 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 SRLQ86TD4 932 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 KCNB2Q92953 911 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 SLC52A2Q9HAB3 445 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 NPHP3Q7Z494 1330 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 ADAMTSL3P82987 1691 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 NECTIN1Q15223 517 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 EPHA10Q5JZY3 1008 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 DHX37Q8IY37 1157 aaKnown RBP22.43■■□□□ 1.18
SMPD1-210ENST00000534405 DDX17Q92841 729 aaKnown RBP22.43■■□□□ 1.18
SMPD1-210ENST00000534405 MRVI1Q9Y6F6 885 aa22.43■■□□□ 1.18
SMPD1-210ENST00000534405 GPS2Q13227 327 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 G3BP1Q13283 466 aaKnown RBP eCLIP22.42■■□□□ 1.18
SMPD1-210ENST00000534405 UBXN6Q9BZV1 441 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 NLRP2Q9NX02 1062 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 NEURL1BA8MQ27 555 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 STX6O43752 255 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 LUZP1Q86V48 1076 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 GOLGA6L1Q8N7Z2 621 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 XAGE3Q8WTP9 111 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 RAPGEF4Q8WZA2 1011 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 SMARCE1Q969G3 411 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 ZSWIM6Q9HCJ5 1215 aa22.42■■□□□ 1.18
SMPD1-210ENST00000534405 BCCIPQ9P287 314 aaKnown RBP eCLIP22.42■■□□□ 1.18
SMPD1-210ENST00000534405 USP27XA6NNY8 438 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 NEMFO60524 1076 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 ST3GAL1Q11201 340 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 NMIQ13287 307 aaPredicted RBP22.41■■□□□ 1.18
SMPD1-210ENST00000534405 CCDC83Q8IWF9 413 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 PDRG1Q9NUG6 133 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 SCN11AQ9UI33 1791 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 PHKG2P15735 406 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 CDC25BP30305 580 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 PIP4K2AP48426 406 aaPredicted RBP22.41■■□□□ 1.18
SMPD1-210ENST00000534405 COPS6Q7L5N1 327 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 ZNF496Q96IT1 587 aaPredicted RBP22.41■■□□□ 1.18
SMPD1-210ENST00000534405 SMC3Q9UQE7 1217 aa22.41■■□□□ 1.18
SMPD1-210ENST00000534405 ALS2Q96Q42 1657 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 VPS53Q5VIR6 699 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 LARP1Q6PKG0 1096 aaKnown RBP22.4■■□□□ 1.18
SMPD1-210ENST00000534405 TRIM5Q9C035 493 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 BOLA2Q9H3K6 86 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 L2HGDHQ9H9P8 463 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 KCND1Q9NSA2 647 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 ATP6V1DQ9Y5K8 247 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 RBM8AQ9Y5S9 174 aaKnown RBP22.4■■□□□ 1.18
SMPD1-210ENST00000534405 MEGF6O75095 1541 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 FIBPO43427 364 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 ST5P78524 1137 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 GCKRQ14397 625 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 FBXO18Q8NFZ0 1043 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 JRKLQ9Y4A0 524 aa22.4■■□□□ 1.18
SMPD1-210ENST00000534405 KIF2AO00139 706 aaPredicted RBP22.39■■□□□ 1.18
SMPD1-210ENST00000534405 TYRO3Q06418 890 aa22.39■■□□□ 1.18
SMPD1-210ENST00000534405 TPRNQ4KMQ1 711 aa22.39■■□□□ 1.18
SMPD1-210ENST00000534405 GOLGA5Q8TBA6 731 aa22.39■■□□□ 1.18
SMPD1-210ENST00000534405 MYD88Q99836 296 aa22.39■■□□□ 1.18
SMPD1-210ENST00000534405 ELP1O95163 1332 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 A0A0D9SFI3 127 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 A0A1B0GUL7 405 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 ERCC6LQ2NKX8 1250 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 CCDC144BQ3MJ40 725 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 LRP10Q7Z4F1 713 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 LRRC8AQ8IWT6 810 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 CCDC144CPQ8IYA2 1237 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 TDRD7Q8NHU6 1098 aaKnown RBP22.39■■□□□ 1.17
SMPD1-210ENST00000534405 TM6SF1Q9BZW5 370 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 CBX8Q9HC52 389 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 CLIP2Q9UDT6 1046 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 RRP15Q9Y3B9 282 aaKnown RBP22.39■■□□□ 1.17
SMPD1-210ENST00000534405 USP16Q9Y5T5 823 aa22.39■■□□□ 1.17
SMPD1-210ENST00000534405 MST1RQ04912 1400 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms