RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 PSME4Q14997 1843 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 GTPBP6O43824 516 aaPredicted RBP11.08□□□□□ -0.64
CD44-232ENST00000531118 DIAPH1O60610 1272 aaKnown RBP11.08□□□□□ -0.64
CD44-232ENST00000531118 RAD17O75943 681 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 SNRPA1P09661 255 aaKnown RBP11.08□□□□□ -0.64
CD44-232ENST00000531118 PLCG2P16885 1265 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 KIAA2012Q0VF49 1180 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 KRT26Q7Z3Y9 468 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 RASAL3Q86YV0 1011 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 C2orf69Q8N8R5 385 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 SUPT20HQ8NEM7 779 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 CSRNP1Q96S65 589 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 RTFDC1Q9BY42 306 aaPredicted RBP11.08□□□□□ -0.64
CD44-232ENST00000531118 OCEL1Q9H607 264 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 CUL9Q8IWT3 2517 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 SCN9AQ15858 1988 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 HTTP42858 3142 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 ABCC4O15439 1325 aa11.08□□□□□ -0.64
CD44-232ENST00000531118 SEC24BO95487 1268 aa11.07□□□□□ -0.64
CD44-232ENST00000531118 PLCB2Q00722 1185 aa11.07□□□□□ -0.64
CD44-232ENST00000531118 TNIP1Q15025 636 aa11.07□□□□□ -0.64
CD44-232ENST00000531118 CNOT7Q9UIV1 285 aaKnown RBP11.07□□□□□ -0.64
CD44-232ENST00000531118 HDAC9Q9UKV0 1011 aa11.07□□□□□ -0.64
CD44-232ENST00000531118 ATP6V0A2Q9Y487 856 aa11.07□□□□□ -0.64
CD44-232ENST00000531118 YDJCA8MPS7 323 aa11.06□□□□□ -0.64
CD44-232ENST00000531118 H7C1D1 291 aa11.06□□□□□ -0.64
CD44-232ENST00000531118 NTSR2O95665 410 aa11.06□□□□□ -0.64
CD44-232ENST00000531118 FBXO46Q6PJ61 603 aaPredicted RBP11.06□□□□□ -0.64
CD44-232ENST00000531118 ZNF296Q8WUU4 475 aaPredicted RBP11.06□□□□□ -0.64
CD44-232ENST00000531118 KNSTRNQ9Y448 316 aa11.06□□□□□ -0.64
CD44-232ENST00000531118 MAP3K15Q6ZN16 1313 aa11.06□□□□□ -0.64
CD44-232ENST00000531118 EGFRP00533 1210 aa11.05□□□□□ -0.64
CD44-232ENST00000531118 GPTP24298 496 aa11.05□□□□□ -0.64
CD44-232ENST00000531118 TBC1D10BQ4KMP7 808 aaPredicted RBP11.05□□□□□ -0.64
CD44-232ENST00000531118 DPP8Q6V1X1 898 aaPredicted RBP11.05□□□□□ -0.64
CD44-232ENST00000531118 SAMD7Q7Z3H4 446 aa11.05□□□□□ -0.64
CD44-232ENST00000531118 TMX4Q9H1E5 349 aaPredicted RBP11.05□□□□□ -0.64
CD44-232ENST00000531118 LAMB1P07942 1786 aa11.05□□□□□ -0.64
CD44-232ENST00000531118 PDCD7Q8N8D1 485 aaKnown RBP11.04□□□□□ -0.64
CD44-232ENST00000531118 GGA3Q9NZ52 723 aa11.04□□□□□ -0.64
CD44-232ENST00000531118 DLG5Q8TDM6 1919 aa11.03□□□□□ -0.64
CD44-232ENST00000531118 BRCA2P51587 3418 aa11.03□□□□□ -0.64
CD44-232ENST00000531118 ERVV-1B6SEH8 477 aa11.03□□□□□ -0.64
CD44-232ENST00000531118 SUSD4Q5VX71 490 aa11.03□□□□□ -0.64
CD44-232ENST00000531118 DPF2Q92785 391 aa11.03□□□□□ -0.64
CD44-232ENST00000531118 DCPSQ96C86 337 aaKnown RBP11.03□□□□□ -0.64
CD44-232ENST00000531118 CDCA5Q96FF9 252 aa11.03□□□□□ -0.64
CD44-232ENST00000531118 MS4A4AQ96JQ5 239 aa11.03□□□□□ -0.64
CD44-232ENST00000531118 SZT2Q5T011 3432 aa11.02□□□□□ -0.64
CD44-232ENST00000531118 PSMD14O00487 310 aa11.02□□□□□ -0.65
CD44-232ENST00000531118 U2SURPO15042 1029 aaKnown RBP11.02□□□□□ -0.65
CD44-232ENST00000531118 TBC1D8O95759 1140 aa11.02□□□□□ -0.65
CD44-232ENST00000531118 KIF4BQ2VIQ3 1234 aa11.02□□□□□ -0.65
CD44-232ENST00000531118 KIF6Q6ZMV9 814 aa11.02□□□□□ -0.65
CD44-232ENST00000531118 TTLL7Q6ZT98 887 aa11.02□□□□□ -0.65
CD44-232ENST00000531118 MPNDQ8N594 471 aa11.02□□□□□ -0.65
CD44-232ENST00000531118 ZBTB3Q9H5J0 574 aa11.02□□□□□ -0.65
CD44-232ENST00000531118 RTL9Q8NET4 1388 aa11.02□□□□□ -0.65
CD44-232ENST00000531118 COL4A1P02462 1669 aa11.01□□□□□ -0.65
CD44-232ENST00000531118 POTEFA5A3E0 1075 aa11.01□□□□□ -0.65
CD44-232ENST00000531118 GPR25O00155 361 aa11.01□□□□□ -0.65
CD44-232ENST00000531118 NOM1Q5C9Z4 860 aaKnown RBP11.01□□□□□ -0.65
CD44-232ENST00000531118 SULF1Q8IWU6 871 aa11.01□□□□□ -0.65
CD44-232ENST00000531118 ZNF34Q8IZ26 560 aa11.01□□□□□ -0.65
CD44-232ENST00000531118 NGEFQ8N5V2 710 aa11.01□□□□□ -0.65
CD44-232ENST00000531118 ASTN2O75129 1339 aaPredicted RBP11.01□□□□□ -0.65
CD44-232ENST00000531118 RPS12P25398 132 aaKnown RBP11□□□□□ -0.65
CD44-232ENST00000531118 PRKAR2BP31323 418 aa11□□□□□ -0.65
CD44-232ENST00000531118 FKBP1BP68106 108 aa11□□□□□ -0.65
CD44-232ENST00000531118 MCM10Q7L590 875 aa11□□□□□ -0.65
CD44-232ENST00000531118 SP8Q8IXZ3 490 aa11□□□□□ -0.65
CD44-232ENST00000531118 NLRP3Q96P20 1036 aa11□□□□□ -0.65
CD44-232ENST00000531118 COLQQ9Y215 455 aaPredicted RBP11□□□□□ -0.65
CD44-232ENST00000531118 ZNF646O15015 1829 aaPredicted RBP11□□□□□ -0.65
CD44-232ENST00000531118 ZNF609O15014 1411 aa11□□□□□ -0.65
CD44-232ENST00000531118 CENPFP49454 3210 aa10.99□□□□□ -0.65
CD44-232ENST00000531118 HSPA5P11021 654 aaKnown RBP10.99□□□□□ -0.65
CD44-232ENST00000531118 PARP10Q53GL7 1025 aa10.99□□□□□ -0.65
CD44-232ENST00000531118 RBM26Q5T8P6 1007 aaKnown RBP10.99□□□□□ -0.65
CD44-232ENST00000531118 PPP1R42Q7Z4L9 355 aa10.99□□□□□ -0.65
CD44-232ENST00000531118 PHACTR3Q96KR7 559 aa10.99□□□□□ -0.65
CD44-232ENST00000531118 DBNDD1Q9H9R9 158 aa10.99□□□□□ -0.65
CD44-232ENST00000531118 FKTNO75072 461 aa10.98□□□□□ -0.65
CD44-232ENST00000531118 GRAPQ13588 217 aa10.98□□□□□ -0.65
CD44-232ENST00000531118 GIGYF2Q6Y7W6 1299 aaKnown RBP10.98□□□□□ -0.65
CD44-232ENST00000531118 GRAPLQ8TC17 118 aaPredicted RBP10.98□□□□□ -0.65
CD44-232ENST00000531118 RSPH6AQ9H0K4 717 aa10.98□□□□□ -0.65
CD44-232ENST00000531118 ECE2O60344 883 aa10.97□□□□□ -0.65
CD44-232ENST00000531118 BBOX1O75936 387 aa10.97□□□□□ -0.65
CD44-232ENST00000531118 EIF4G2P78344 907 aaKnown RBP eCLIP10.97□□□□□ -0.65
CD44-232ENST00000531118 MOB2Q70IA6 237 aa10.97□□□□□ -0.65
CD44-232ENST00000531118 RTF1Q92541 710 aaKnown RBP10.97□□□□□ -0.65
CD44-232ENST00000531118 CFHR5Q9BXR6 569 aa10.97□□□□□ -0.65
CD44-232ENST00000531118 DLL1O00548 723 aa10.96□□□□□ -0.65
CD44-232ENST00000531118 MYL6BP14649 208 aa10.96□□□□□ -0.65
CD44-232ENST00000531118 DCTN1Q14203 1278 aa10.96□□□□□ -0.65
CD44-232ENST00000531118 SLC10A5Q5PT55 438 aa10.96□□□□□ -0.65
CD44-232ENST00000531118 ANGEL2Q5VTE6 544 aaKnown RBP10.96□□□□□ -0.65
CD44-232ENST00000531118 UTP14AQ9BVJ6 771 aaKnown RBP10.96□□□□□ -0.65
CD44-232ENST00000531118 RRP7AQ9Y3A4 280 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms