RNA–Protein interactions for RNA: ENST00000528165.5

CAPN1-214, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 2,828 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-214ENST00000528165 NAA16Q6N069 864 aaPredicted RBP17.11■□□□□ 0.33
CAPN1-214ENST00000528165 FSIP1Q8NA03 581 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 LTV1Q96GA3 475 aaPredicted RBP17.11■□□□□ 0.33
CAPN1-214ENST00000528165 ZNF396Q96N95 335 aaPredicted RBP17.11■□□□□ 0.33
CAPN1-214ENST00000528165 TLR7Q9NYK1 1049 aaKnown RBP17.11■□□□□ 0.33
CAPN1-214ENST00000528165 LRRN4CLQ8ND94 238 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 ENGASEQ8NFI3 743 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 SYTL4Q96C24 671 aaPredicted RBP17.11■□□□□ 0.33
CAPN1-214ENST00000528165 MAP3K2Q9Y2U5 619 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 TEX35Q5T0J7 233 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 TMC6Q7Z403 805 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 HOMER1Q86YM7 354 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 NGDNQ8NEJ9 315 aaKnown RBP17.11■□□□□ 0.33
CAPN1-214ENST00000528165 ERCC4Q92889 916 aaPredicted RBP17.11■□□□□ 0.33
CAPN1-214ENST00000528165 USP28Q96RU2 1077 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 SDF4Q9BRK5 362 aa17.11■□□□□ 0.33
CAPN1-214ENST00000528165 JCADQ9P266 1359 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 TULP2O00295 520 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 HOXC9P31274 260 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 SCRN1Q12765 414 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 DHX8Q14562 1220 aaKnown RBP17.1■□□□□ 0.33
CAPN1-214ENST00000528165 USPL1Q5W0Q7 1092 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 TMCO3Q6UWJ1 677 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 UBXN4Q92575 508 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 LLPHQ9BRT6 129 aaKnown RBP17.1■□□□□ 0.33
CAPN1-214ENST00000528165 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.1■□□□□ 0.33
CAPN1-214ENST00000528165 SLC20A2Q08357 652 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 ATL3Q6DD88 541 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 ARMCX5Q6P1M9 558 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 SMARCC2Q8TAQ2 1214 aa17.1■□□□□ 0.33
CAPN1-214ENST00000528165 PTPRUQ92729 1446 aa17.09■□□□□ 0.33
CAPN1-214ENST00000528165 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.09■□□□□ 0.33
CAPN1-214ENST00000528165 KCNJ6P48051 423 aa17.09■□□□□ 0.33
CAPN1-214ENST00000528165 HNRNPH2P55795 449 aaKnown RBP17.09■□□□□ 0.33
CAPN1-214ENST00000528165 GORABQ5T7V8 394 aa17.09■□□□□ 0.33
CAPN1-214ENST00000528165 XPO4Q9C0E2 1151 aaKnown RBP17.09■□□□□ 0.33
CAPN1-214ENST00000528165 IFNKQ9P0W0 207 aa17.09■□□□□ 0.33
CAPN1-214ENST00000528165 PLA2G4AP47712 749 aa17.09■□□□□ 0.33
CAPN1-214ENST00000528165 NLRP6P59044 892 aa17.09■□□□□ 0.33
CAPN1-214ENST00000528165 MLECQ14165 292 aa17.09■□□□□ 0.33
CAPN1-214ENST00000528165 CWF19L2Q2TBE0 894 aaKnown RBP17.08■□□□□ 0.33
CAPN1-214ENST00000528165 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.08■□□□□ 0.33
CAPN1-214ENST00000528165 DBF4Q9UBU7 674 aaPredicted RBP17.08■□□□□ 0.33
CAPN1-214ENST00000528165 TPM4P67936 248 aa17.08■□□□□ 0.32
CAPN1-214ENST00000528165 LRRC2Q9BYS8 371 aa17.08■□□□□ 0.32
CAPN1-214ENST00000528165 SIL1Q9H173 461 aa17.08■□□□□ 0.32
CAPN1-214ENST00000528165 NAP1L2Q9ULW6 460 aaPredicted RBP17.08■□□□□ 0.32
CAPN1-214ENST00000528165 CEMIPQ8WUJ3 1361 aa17.07■□□□□ 0.32
CAPN1-214ENST00000528165 CCP110O43303 1012 aa17.07■□□□□ 0.32
CAPN1-214ENST00000528165 NSUN7Q8NE18 718 aaKnown RBP17.07■□□□□ 0.32
CAPN1-214ENST00000528165 MNS1Q8NEH6 495 aa17.07■□□□□ 0.32
CAPN1-214ENST00000528165 MRPS27Q92552 414 aaKnown RBP17.07■□□□□ 0.32
CAPN1-214ENST00000528165 TSPYL1Q9H0U9 437 aa17.07■□□□□ 0.32
CAPN1-214ENST00000528165 U3KPZ7 1027 aaPredicted RBP17.07■□□□□ 0.32
CAPN1-214ENST00000528165 ETF1P62495 437 aaKnown RBP17.07■□□□□ 0.32
CAPN1-214ENST00000528165 USHBP1Q8N6Y0 703 aa17.07■□□□□ 0.32
CAPN1-214ENST00000528165 DNAI1Q9UI46 699 aa17.07■□□□□ 0.32
CAPN1-214ENST00000528165 PTPDC1A2A3K4 754 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 KCNQ3O43525 872 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 PFKFB2O60825 505 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 CAPN2P17655 700 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 KSR2Q6VAB6 950 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 SUCLG2Q96I99 432 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 ORC3Q9UBD5 711 aaPredicted RBP17.06■□□□□ 0.32
CAPN1-214ENST00000528165 NWD1Q149M9 1564 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 POLR3GO15318 223 aaPredicted RBP17.06■□□□□ 0.32
CAPN1-214ENST00000528165 ZRANB2O95218 330 aaKnown RBP eCLIP17.06■□□□□ 0.324e-7■■■■■ 32.1
CAPN1-214ENST00000528165 DPCR1Q3MIW9 517 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 FMR1NBQ8N0W7 255 aaPredicted RBP17.06■□□□□ 0.32
CAPN1-214ENST00000528165 EDC3Q96F86 508 aaKnown RBP17.06■□□□□ 0.32
CAPN1-214ENST00000528165 TRERF1Q96PN7 1200 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 BICC1Q9H694 974 aaKnown RBP17.06■□□□□ 0.32
CAPN1-214ENST00000528165 LGR6Q9HBX8 967 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 PHLPP2Q6ZVD8 1323 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 BPIFA3Q9BQP9 254 aa17.06■□□□□ 0.32
CAPN1-214ENST00000528165 GRM8O00222 908 aa17.05■□□□□ 0.32
CAPN1-214ENST00000528165 PDE4CQ08493 712 aa17.05■□□□□ 0.32
CAPN1-214ENST00000528165 FMNL2Q96PY5 1086 aa17.05■□□□□ 0.32
CAPN1-214ENST00000528165 SRRTQ9BXP5 876 aaKnown RBP17.05■□□□□ 0.32
CAPN1-214ENST00000528165 KIAA1468Q9P260 1216 aa17.05■□□□□ 0.32
CAPN1-214ENST00000528165 BTBD11A6QL63 1104 aa17.05■□□□□ 0.32
CAPN1-214ENST00000528165 CYP21A2P08686 494 aa17.05■□□□□ 0.32
CAPN1-214ENST00000528165 TEFQ10587 303 aa17.05■□□□□ 0.32
CAPN1-214ENST00000528165 PCDHA7Q9UN72 937 aa17.05■□□□□ 0.32
CAPN1-214ENST00000528165 A0A1B0GVL5 298 aa17.04■□□□□ 0.32
CAPN1-214ENST00000528165 HMGB1P09429 215 aaKnown RBP17.04■□□□□ 0.32
CAPN1-214ENST00000528165 TPM1P09493 284 aa17.04■□□□□ 0.32
CAPN1-214ENST00000528165 GUCY1B3Q02153 619 aa17.04■□□□□ 0.32
CAPN1-214ENST00000528165 TXLNBQ8N3L3 684 aa17.04■□□□□ 0.32
CAPN1-214ENST00000528165 COL15A1P39059 1388 aa17.04■□□□□ 0.32
CAPN1-214ENST00000528165 URI1O94763 535 aaPredicted RBP17.03■□□□□ 0.32
CAPN1-214ENST00000528165 CTDNEP1O95476 244 aa17.03■□□□□ 0.32
CAPN1-214ENST00000528165 ADALQ6DHV7 355 aa17.03■□□□□ 0.32
CAPN1-214ENST00000528165 LINS1Q8NG48 757 aa17.03■□□□□ 0.32
CAPN1-214ENST00000528165 KAZALD1Q96I82 304 aa17.03■□□□□ 0.32
CAPN1-214ENST00000528165 MYH15Q9Y2K3 1946 aa17.03■□□□□ 0.32
CAPN1-214ENST00000528165 CCT2P78371 535 aaKnown RBP17.03■□□□□ 0.32
CAPN1-214ENST00000528165 SF3A1Q15459 793 aaKnown RBP17.03■□□□□ 0.32
CAPN1-214ENST00000528165 CCDC129Q6ZRS4 1044 aa17.03■□□□□ 0.32
CAPN1-214ENST00000528165 IPO4Q8TEX9 1081 aaKnown RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms