RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 BRPF1P55201 1214 aaPredicted RBP30.56■■■□□ 2.48
CPSF1-202ENST00000527827 GOLGA2Q08379 1002 aa30.56■■■□□ 2.48
CPSF1-202ENST00000527827 IFT57Q9NWB7 429 aa30.56■■■□□ 2.48
CPSF1-202ENST00000527827 PODXL2Q9NZ53 605 aa30.55■■■□□ 2.48
CPSF1-202ENST00000527827 CASP8AP2Q9UKL3 1982 aa30.54■■■□□ 2.48
CPSF1-202ENST00000527827 ELL2O00472 640 aaPredicted RBP30.54■■■□□ 2.48
CPSF1-202ENST00000527827 APAF1O14727 1248 aa30.54■■■□□ 2.48
CPSF1-202ENST00000527827 CA12O43570 354 aa30.54■■■□□ 2.48
CPSF1-202ENST00000527827 MYD88Q99836 296 aa30.54■■■□□ 2.48
CPSF1-202ENST00000527827 PRKRIP1Q9H875 184 aaPredicted RBP30.54■■■□□ 2.48
CPSF1-202ENST00000527827 KRT26Q7Z3Y9 468 aa30.53■■■□□ 2.48
CPSF1-202ENST00000527827 ZIC5Q96T25 663 aa30.53■■■□□ 2.48
CPSF1-202ENST00000527827 HUNKP57058 714 aa30.52■■■□□ 2.48
CPSF1-202ENST00000527827 GNAI1P63096 354 aa30.52■■■□□ 2.48
CPSF1-202ENST00000527827 RBM26Q5T8P6 1007 aaKnown RBP30.52■■■□□ 2.48
CPSF1-202ENST00000527827 ZC3H12CQ9C0D7 883 aaKnown RBP30.52■■■□□ 2.48
CPSF1-202ENST00000527827 VIL1P09327 827 aaKnown RBP30.51■■■□□ 2.47
CPSF1-202ENST00000527827 CCDC191Q8NCU4 936 aa30.51■■■□□ 2.47
CPSF1-202ENST00000527827 ADM5C9JUS6 153 aa30.5■■■□□ 2.47
CPSF1-202ENST00000527827 PCCAP05165 728 aaPredicted RBP30.5■■■□□ 2.47
CPSF1-202ENST00000527827 HSP90B1P14625 803 aaKnown RBP30.5■■■□□ 2.47
CPSF1-202ENST00000527827 NOGQ13253 232 aa30.5■■■□□ 2.47
CPSF1-202ENST00000527827 C8orf58Q8NAV2 365 aa30.5■■■□□ 2.47
CPSF1-202ENST00000527827 UFL1O94874 794 aa30.49■■■□□ 2.47
CPSF1-202ENST00000527827 JARID2Q92833 1246 aaPredicted RBP30.49■■■□□ 2.47
CPSF1-202ENST00000527827 DCPSQ96C86 337 aaKnown RBP30.49■■■□□ 2.47
CPSF1-202ENST00000527827 GBA2Q9HCG7 927 aaPredicted RBP30.49■■■□□ 2.47
CPSF1-202ENST00000527827 PSME4Q14997 1843 aa30.49■■■□□ 2.47
CPSF1-202ENST00000527827 PDE8AO60658 829 aa30.48■■■□□ 2.47
CPSF1-202ENST00000527827 CALD1Q05682 793 aaKnown RBP30.48■■■□□ 2.47
CPSF1-202ENST00000527827 KIF4BQ2VIQ3 1234 aa30.48■■■□□ 2.47
CPSF1-202ENST00000527827 CCDC152Q4G0S7 254 aa30.48■■■□□ 2.47
CPSF1-202ENST00000527827 ANKIB1Q9P2G1 1089 aa30.48■■■□□ 2.47
CPSF1-202ENST00000527827 GGA1Q9UJY5 639 aa30.48■■■□□ 2.47
CPSF1-202ENST00000527827 CCDC85CA6NKD9 419 aa30.47■■■□□ 2.47
CPSF1-202ENST00000527827 METTL22Q9BUU2 404 aaPredicted RBP30.47■■■□□ 2.47
CPSF1-202ENST00000527827 CWC25Q9NXE8 425 aaPredicted RBP30.47■■■□□ 2.47
CPSF1-202ENST00000527827 FAM155AB1AL88 458 aaPredicted RBP30.46■■■□□ 2.47
CPSF1-202ENST00000527827 RGMBQ6NW40 437 aa30.46■■■□□ 2.47
CPSF1-202ENST00000527827 CCDC85AQ96PX6 553 aaPredicted RBP30.46■■■□□ 2.47
CPSF1-202ENST00000527827 ASTN2O75129 1339 aaPredicted RBP30.46■■■□□ 2.47
CPSF1-202ENST00000527827 C2orf69Q8N8R5 385 aa30.45■■■□□ 2.47
CPSF1-202ENST00000527827 ZNF609O15014 1411 aa30.45■■■□□ 2.46
CPSF1-202ENST00000527827 FAM161AQ3B820 660 aa30.44■■■□□ 2.46
CPSF1-202ENST00000527827 GGA3Q9NZ52 723 aa30.44■■■□□ 2.46
CPSF1-202ENST00000527827 G3V3G9 751 aa30.43■■■□□ 2.46
CPSF1-202ENST00000527827 DCAF8Q5TAQ9 597 aa30.43■■■□□ 2.46
CPSF1-202ENST00000527827 MCOLN1Q9GZU1 580 aa30.43■■■□□ 2.46
CPSF1-202ENST00000527827 DDX58O95786 925 aaKnown RBP30.42■■■□□ 2.46
CPSF1-202ENST00000527827 CCDC30Q5VVM6 783 aa30.42■■■□□ 2.46
CPSF1-202ENST00000527827 RSBN1LQ6PCB5 846 aaPredicted RBP30.42■■■□□ 2.46
CPSF1-202ENST00000527827 ZNF280AP59817 542 aaPredicted RBP30.41■■■□□ 2.46
CPSF1-202ENST00000527827 ANKRD18AQ8IVF6 992 aa30.41■■■□□ 2.46
CPSF1-202ENST00000527827 SULF1Q8IWU6 871 aa30.41■■■□□ 2.46
CPSF1-202ENST00000527827 TSPYL6Q8N831 410 aa30.41■■■□□ 2.46
CPSF1-202ENST00000527827 AGBL3Q8NEM8 1001 aa30.41■■■□□ 2.46
CPSF1-202ENST00000527827 MAP3K2Q9Y2U5 619 aa30.41■■■□□ 2.46
CPSF1-202ENST00000527827 XDHP47989 1333 aa30.41■■■□□ 2.46
CPSF1-202ENST00000527827 CCDC102AQ96A19 550 aa30.4■■■□□ 2.46
CPSF1-202ENST00000527827 MYH3P11055 1940 aa30.39■■■□□ 2.46
CPSF1-202ENST00000527827 RGS19P49795 217 aa30.39■■■□□ 2.46
CPSF1-202ENST00000527827 GMLQ99445 158 aa30.39■■■□□ 2.46
CPSF1-202ENST00000527827 IGKV5-2P06315 115 aa30.38■■■□□ 2.45
CPSF1-202ENST00000527827 ZNF157P51786 506 aaPredicted RBP30.38■■■□□ 2.45
CPSF1-202ENST00000527827 KIF23Q02241 960 aaPredicted RBP30.38■■■□□ 2.45
CPSF1-202ENST00000527827 CDCA5Q96FF9 252 aa30.38■■■□□ 2.45
CPSF1-202ENST00000527827 SPEF2Q9C093 1822 aa30.38■■■□□ 2.45
CPSF1-202ENST00000527827 WTIPA6NIX2 430 aaPredicted RBP30.37■■■□□ 2.45
CPSF1-202ENST00000527827 ATP2B4P23634 1241 aa30.37■■■□□ 2.45
CPSF1-202ENST00000527827 CTSWP56202 376 aa30.37■■■□□ 2.45
CPSF1-202ENST00000527827 SCARF1Q14162 830 aa30.37■■■□□ 2.45
CPSF1-202ENST00000527827 ANGEL2Q5VTE6 544 aaKnown RBP30.37■■■□□ 2.45
CPSF1-202ENST00000527827 KSR2Q6VAB6 950 aa30.37■■■□□ 2.45
CPSF1-202ENST00000527827 CHMP4AQ9BY43 222 aa30.37■■■□□ 2.45
CPSF1-202ENST00000527827 PI4KAP2A4QPH2 592 aa30.36■■■□□ 2.45
CPSF1-202ENST00000527827 DGKZQ13574 1117 aa30.36■■■□□ 2.45
CPSF1-202ENST00000527827 PI4KAP1Q8N8J0 262 aa30.36■■■□□ 2.45
CPSF1-202ENST00000527827 AKAP11Q9UKA4 1901 aa30.35■■■□□ 2.45
CPSF1-202ENST00000527827 PODNQ7Z5L7 613 aa30.35■■■□□ 2.45
CPSF1-202ENST00000527827 TTLL11Q8NHH1 800 aa30.35■■■□□ 2.45
CPSF1-202ENST00000527827 CDC5LQ99459 802 aaKnown RBP30.35■■■□□ 2.45
CPSF1-202ENST00000527827 ZNF646O15015 1829 aaPredicted RBP30.34■■■□□ 2.45
CPSF1-202ENST00000527827 USP17L3A6NCW0 530 aa30.34■■■□□ 2.45
CPSF1-202ENST00000527827 USP17L4A6NCW7 530 aa30.34■■■□□ 2.45
CPSF1-202ENST00000527827 SLC10A3P09131 477 aa30.34■■■□□ 2.45
CPSF1-202ENST00000527827 USP17L8P0C7I0 530 aa30.34■■■□□ 2.45
CPSF1-202ENST00000527827 USP17L1Q7RTZ2 530 aa30.34■■■□□ 2.45
CPSF1-202ENST00000527827 MYOZ2Q9NPC6 264 aa30.34■■■□□ 2.45
CPSF1-202ENST00000527827 SAGE1Q9NXZ1 904 aa30.34■■■□□ 2.45
CPSF1-202ENST00000527827 MLLT1Q03111 559 aaPredicted RBP30.33■■■□□ 2.45
CPSF1-202ENST00000527827 TSR2Q969E8 191 aaKnown RBP30.33■■■□□ 2.45
CPSF1-202ENST00000527827 MINPP1Q9UNW1 487 aa30.33■■■□□ 2.45
CPSF1-202ENST00000527827 GREM2Q9H772 168 aa30.32■■■□□ 2.44
CPSF1-202ENST00000527827 BSDC1Q9NW68 430 aaPredicted RBP30.32■■■□□ 2.44
CPSF1-202ENST00000527827 RNF186Q9NXI6 227 aa30.32■■■□□ 2.44
CPSF1-202ENST00000527827 MED23Q9ULK4 1368 aa30.31■■■□□ 2.44
CPSF1-202ENST00000527827 CWF19L2Q2TBE0 894 aaKnown RBP30.31■■■□□ 2.44
CPSF1-202ENST00000527827 PITPNM2Q9BZ72 1349 aa30.3■■■□□ 2.44
CPSF1-202ENST00000527827 CSRNP1Q96S65 589 aa30.3■■■□□ 2.44
CPSF1-202ENST00000527827 PAPPA2Q9BXP8 1791 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms