RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 BRPF1P55201 1214 aaPredicted RBP8.55□□□□□ -1.04
CD44-221ENST00000526000 SOX10P56693 466 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 NOGQ13253 232 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 SCARF1Q14162 830 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 WDR43Q15061 677 aaKnown RBP eCLIP8.55□□□□□ -1.04
CD44-221ENST00000526000 RALBP1Q15311 655 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 KIF4BQ2VIQ3 1234 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 MOB2Q70IA6 237 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 DPF2Q92785 391 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 RUNDC1Q96C34 613 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 MXD3Q9BW11 206 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 BABAM1Q9NWV8 329 aa8.55□□□□□ -1.04
CD44-221ENST00000526000 RTL9Q8NET4 1388 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 FAM155AB1AL88 458 aaPredicted RBP8.54□□□□□ -1.04
CD44-221ENST00000526000 SULF1Q8IWU6 871 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 FBXW7Q969H0 707 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 CSRNP1Q96S65 589 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 EYA3Q99504 573 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 MBIPQ9NS73 344 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 HYPKQ9NX55 129 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 RNF186Q9NXI6 227 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 GGA3Q9NZ52 723 aa8.54□□□□□ -1.04
CD44-221ENST00000526000 DBF4Q9UBU7 674 aaPredicted RBP8.54□□□□□ -1.04
CD44-221ENST00000526000 CASP8AP2Q9UKL3 1982 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 UBE2Q2LH0YL09 131 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 APAF1O14727 1248 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 CA12O43570 354 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 VIL1P09327 827 aaKnown RBP8.53□□□□□ -1.04
CD44-221ENST00000526000 RGS19P49795 217 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 MKRN3Q13064 507 aaKnown RBP8.53□□□□□ -1.04
CD44-221ENST00000526000 PRKG1Q13976 671 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 ANGEL2Q5VTE6 544 aaKnown RBP8.53□□□□□ -1.04
CD44-221ENST00000526000 TMC4Q7Z404 712 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 CDCA5Q96FF9 252 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 HHIPL1Q96JK4 782 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 GGA1Q9UJY5 639 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 TAF1P21675 1872 aa8.53□□□□□ -1.04
CD44-221ENST00000526000 DLG5Q8TDM6 1919 aa8.52□□□□□ -1.04
CD44-221ENST00000526000 TBC1D8O95759 1140 aa8.52□□□□□ -1.05
CD44-221ENST00000526000 GOLGA2Q08379 1002 aa8.52□□□□□ -1.05
CD44-221ENST00000526000 TTLL12Q14166 644 aaPredicted RBP8.52□□□□□ -1.05
CD44-221ENST00000526000 ZBTB38Q8NAP3 1195 aaPredicted RBP8.52□□□□□ -1.05
CD44-221ENST00000526000 C8orf58Q8NAV2 365 aa8.52□□□□□ -1.05
CD44-221ENST00000526000 CCDC102AQ96A19 550 aa8.52□□□□□ -1.05
CD44-221ENST00000526000 CDHR2Q9BYE9 1310 aa8.52□□□□□ -1.05
CD44-221ENST00000526000 KDM3BQ7LBC6 1761 aa8.51□□□□□ -1.05
CD44-221ENST00000526000 PDE8AO60658 829 aa8.51□□□□□ -1.05
CD44-221ENST00000526000 RPS12P25398 132 aaKnown RBP8.51□□□□□ -1.05
CD44-221ENST00000526000 TRIM28Q13263 835 aaKnown RBP8.51□□□□□ -1.05
CD44-221ENST00000526000 CCDC152Q4G0S7 254 aa8.51□□□□□ -1.05
CD44-221ENST00000526000 RSBN1LQ6PCB5 846 aaPredicted RBP8.51□□□□□ -1.05
CD44-221ENST00000526000 ANKRD18AQ8IVF6 992 aa8.51□□□□□ -1.05
CD44-221ENST00000526000 SLC34A2O95436 690 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 SLC10A3P09131 477 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 USP17L8P0C7I0 530 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 NBPF9Q3BBW0 867 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 TSPYL6Q8N831 410 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 MYOZ2Q9NPC6 264 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 CWC25Q9NXE8 425 aaPredicted RBP8.5□□□□□ -1.05
CD44-221ENST00000526000 FZD1Q9UP38 647 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 MAP3K2Q9Y2U5 619 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 LAMB4A4D0S4 1761 aa8.5□□□□□ -1.05
CD44-221ENST00000526000 MYBBP1AQ9BQG0 1328 aaKnown RBP8.5□□□□□ -1.05
CD44-221ENST00000526000 COL4A1P02462 1669 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 USP17L3A6NCW0 530 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 USP17L4A6NCW7 530 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 PCCAP05165 728 aaPredicted RBP8.49□□□□□ -1.05
CD44-221ENST00000526000 ATP2B4P23634 1241 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 USP17L1Q7RTZ2 530 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 RASAL3Q86YV0 1011 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 CCDC191Q8NCU4 936 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 METTL22Q9BUU2 404 aaPredicted RBP8.49□□□□□ -1.05
CD44-221ENST00000526000 PODXL2Q9NZ53 605 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 HDAC9Q9UKV0 1011 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 TRPM7Q96QT4 1865 aa8.49□□□□□ -1.05
CD44-221ENST00000526000 POLR2AP24928 1970 aaKnown RBP8.48□□□□□ -1.05
CD44-221ENST00000526000 PI4KAP2A4QPH2 592 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 SNAP23O00161 211 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 HOXB7P09629 217 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 ZNF853P0CG23 659 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 ZNF280AP59817 542 aaPredicted RBP8.48□□□□□ -1.05
CD44-221ENST00000526000 GNAI1P63096 354 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 CWF19L2Q2TBE0 894 aaKnown RBP8.48□□□□□ -1.05
CD44-221ENST00000526000 G2E3Q7L622 706 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 TXNRD3Q86VQ6 643 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 PI4KAP1Q8N8J0 262 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 AGBL3Q8NEM8 1001 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 TSR2Q969E8 191 aaKnown RBP8.48□□□□□ -1.05
CD44-221ENST00000526000 GMLQ99445 158 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 GREM2Q9H772 168 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 MINPP1Q9UNW1 487 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 SALL2Q9Y467 1007 aaPredicted RBP8.48□□□□□ -1.05
CD44-221ENST00000526000 XDHP47989 1333 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 DUOX1Q9NRD9 1551 aa8.48□□□□□ -1.05
CD44-221ENST00000526000 SASH1O94885 1247 aa8.47□□□□□ -1.05
CD44-221ENST00000526000 DDX58O95786 925 aaKnown RBP8.47□□□□□ -1.05
CD44-221ENST00000526000 IGKV5-2P06315 115 aa8.47□□□□□ -1.05
CD44-221ENST00000526000 HSP90B1P14625 803 aaKnown RBP8.47□□□□□ -1.05
CD44-221ENST00000526000 KLRK1P26718 216 aa8.47□□□□□ -1.05
CD44-221ENST00000526000 PTPN12Q05209 780 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms