RNA–Protein interactions for RNA: ENST00000523062.1

CSMD1-211, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 3

Gene CSMD1, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-211ENST00000523062 PARP4Q9UKK3 1724 aaKnown RBP8.6□□□□□ -1.03
CSMD1-211ENST00000523062 ROBO1Q9Y6N7 1651 aa8.6□□□□□ -1.03
CSMD1-211ENST00000523062 IGHA1P01876 353 aa8.6□□□□□ -1.03
CSMD1-211ENST00000523062 FLIIQ13045 1269 aa8.6□□□□□ -1.03
CSMD1-211ENST00000523062 CACNA1FO60840 1977 aa8.6□□□□□ -1.03
CSMD1-211ENST00000523062 KDM6AO15550 1401 aaPredicted RBP8.6□□□□□ -1.03
CSMD1-211ENST00000523062 SIPA1L3O60292 1781 aaPredicted RBP8.6□□□□□ -1.03
CSMD1-211ENST00000523062 COL22A1Q8NFW1 1626 aaPredicted RBP8.59□□□□□ -1.03
CSMD1-211ENST00000523062 SCN11AQ9UI33 1791 aa8.59□□□□□ -1.03
CSMD1-211ENST00000523062 ANP32AP39687 249 aaKnown RBP8.59□□□□□ -1.03
CSMD1-211ENST00000523062 FKBP5Q13451 457 aaPredicted RBP8.59□□□□□ -1.03
CSMD1-211ENST00000523062 RBM26Q5T8P6 1007 aaKnown RBP8.59□□□□□ -1.03
CSMD1-211ENST00000523062 MRPL14Q6P1L8 145 aaKnown RBP8.59□□□□□ -1.03
CSMD1-211ENST00000523062 TOM1L2Q6ZVM7 507 aa8.59□□□□□ -1.03
CSMD1-211ENST00000523062 G2E3Q7L622 706 aa8.59□□□□□ -1.03
CSMD1-211ENST00000523062 DCAF5Q96JK2 942 aa8.59□□□□□ -1.03
CSMD1-211ENST00000523062 CARD10Q9BWT7 1032 aa8.59□□□□□ -1.03
CSMD1-211ENST00000523062 SLC52A2Q9HAB3 445 aa8.59□□□□□ -1.03
CSMD1-211ENST00000523062 HEG1Q9ULI3 1381 aa8.59□□□□□ -1.03
CSMD1-211ENST00000523062 VIRMAQ69YN4 1812 aaKnown RBP8.59□□□□□ -1.03
CSMD1-211ENST00000523062 PCDH11XQ9BZA7 1347 aa8.58□□□□□ -1.04
CSMD1-211ENST00000523062 PCDH11YQ9BZA8 1340 aa8.58□□□□□ -1.04
CSMD1-211ENST00000523062 KCNQ3O43525 872 aa8.58□□□□□ -1.04
CSMD1-211ENST00000523062 GCC1Q96CN9 775 aa8.58□□□□□ -1.04
CSMD1-211ENST00000523062 C1orf115Q9H7X2 142 aa8.58□□□□□ -1.04
CSMD1-211ENST00000523062 N4BP2Q86UW6 1770 aaPredicted RBP8.58□□□□□ -1.04
CSMD1-211ENST00000523062 ATP10DQ9P241 1426 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 CYP27B1O15528 508 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 IL2RBP14784 551 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 CD46P15529 392 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 EIF2S2P20042 333 aaKnown RBP8.57□□□□□ -1.04
CSMD1-211ENST00000523062 EVA1CP58658 441 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 NUCB1Q02818 461 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 C8orf34Q49A92 452 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 PTCRAQ6ISU1 281 aaPredicted RBP8.57□□□□□ -1.04
CSMD1-211ENST00000523062 SLC4A10Q6U841 1118 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 RPAP2Q8IXW5 612 aaPredicted RBP8.57□□□□□ -1.04
CSMD1-211ENST00000523062 ANKRD44Q8N8A2 993 aa8.57□□□□□ -1.04
CSMD1-211ENST00000523062 ZCRB1Q8TBF4 217 aaKnown RBP8.57□□□□□ -1.04
CSMD1-211ENST00000523062 COL14A1Q05707 1796 aaKnown RBP8.57□□□□□ -1.04
CSMD1-211ENST00000523062 F6X3S4 739 aa8.56□□□□□ -1.04
CSMD1-211ENST00000523062 HMMRO75330 724 aa8.56□□□□□ -1.04
CSMD1-211ENST00000523062 GIGYF1O75420 1035 aaPredicted RBP8.56□□□□□ -1.04
CSMD1-211ENST00000523062 GNAI3P08754 354 aa8.56□□□□□ -1.04
CSMD1-211ENST00000523062 ZNF790Q6PG37 636 aa8.56□□□□□ -1.04
CSMD1-211ENST00000523062 HLA-CQ95604 372 aa8.56□□□□□ -1.04
CSMD1-211ENST00000523062 MEIS3Q99687 375 aa8.56□□□□□ -1.04
CSMD1-211ENST00000523062 STRN4Q9NRL3 753 aa8.56□□□□□ -1.04
CSMD1-211ENST00000523062 CHPF2Q9P2E5 772 aa8.56□□□□□ -1.04
CSMD1-211ENST00000523062 DBF4Q9UBU7 674 aaPredicted RBP8.56□□□□□ -1.04
CSMD1-211ENST00000523062 KDM4AO75164 1064 aa8.55□□□□□ -1.04
CSMD1-211ENST00000523062 CEP85Q6P2H3 762 aa8.55□□□□□ -1.04
CSMD1-211ENST00000523062 LARP1Q6PKG0 1096 aaKnown RBP8.55□□□□□ -1.04
CSMD1-211ENST00000523062 CHD1LQ86WJ1 897 aa8.55□□□□□ -1.04
CSMD1-211ENST00000523062 SIRT2Q8IXJ6 389 aa8.55□□□□□ -1.04
CSMD1-211ENST00000523062 TTC5Q8N0Z6 440 aa8.55□□□□□ -1.04
CSMD1-211ENST00000523062 PURBQ96QR8 312 aaKnown RBP8.55□□□□□ -1.04
CSMD1-211ENST00000523062 COL16A1Q07092 1604 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-211ENST00000523062 GNAI2P04899 355 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 JUNDP17535 347 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 CABP4P57796 275 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 XP32Q5T750 250 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 GPAT2Q6NUI2 795 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 NFATC2IPQ8NCF5 419 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 DCTPP1Q9H773 170 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 PHAXQ9H814 394 aaKnown RBP8.54□□□□□ -1.04
CSMD1-211ENST00000523062 HYPKQ9NX55 129 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 DNMT3AQ9Y6K1 912 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-211ENST00000523062 PHLPP1O60346 1717 aa8.54□□□□□ -1.04
CSMD1-211ENST00000523062 SOBPA7XYQ1 873 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 ERVV-2B6SEH9 535 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 TOM1O60784 492 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 SNRPA1P09661 255 aaKnown RBP8.53□□□□□ -1.04
CSMD1-211ENST00000523062 SH3BP2P78314 561 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 FOXK2Q01167 660 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 SLC39A6Q13433 755 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 ANKRD45Q5TZF3 282 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 DNAAF4Q8WXU2 420 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 FMNL2Q96PY5 1086 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 LNPKQ9C0E8 428 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 SRCIN1Q9C0H9 1055 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 DDX21Q9NR30 783 aaKnown RBP eCLIP8.53□□□□□ -1.04
CSMD1-211ENST00000523062 BTG4Q9NY30 223 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 DISP2A7MBM2 1401 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 PLCH1Q4KWH8 1693 aa8.53□□□□□ -1.04
CSMD1-211ENST00000523062 SHANK3Q9BYB0 1731 aa8.52□□□□□ -1.05
CSMD1-211ENST00000523062 ADCY9O60503 1353 aa8.52□□□□□ -1.05
CSMD1-211ENST00000523062 MAN1A2O60476 641 aa8.52□□□□□ -1.05
CSMD1-211ENST00000523062 PPFIA3O75145 1194 aa8.52□□□□□ -1.05
CSMD1-211ENST00000523062 DDX58O95786 925 aaKnown RBP8.52□□□□□ -1.05
CSMD1-211ENST00000523062 UBTFL1P0CB47 393 aaPredicted RBP8.52□□□□□ -1.05
CSMD1-211ENST00000523062 NPM2Q86SE8 214 aaKnown RBP8.52□□□□□ -1.05
CSMD1-211ENST00000523062 ZNF496Q96IT1 587 aaPredicted RBP8.52□□□□□ -1.05
CSMD1-211ENST00000523062 C5P01031 1676 aa8.52□□□□□ -1.05
CSMD1-211ENST00000523062 LAMB4A4D0S4 1761 aa8.51□□□□□ -1.05
CSMD1-211ENST00000523062 TESPA1A2RU30 521 aaPredicted RBP8.51□□□□□ -1.05
CSMD1-211ENST00000523062 PRAMEF22A3QJZ6 481 aa8.51□□□□□ -1.05
CSMD1-211ENST00000523062 PI4KAP2A4QPH2 592 aa8.51□□□□□ -1.05
CSMD1-211ENST00000523062 ALDH1L1O75891 902 aa8.51□□□□□ -1.05
CSMD1-211ENST00000523062 ANXA1P04083 346 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms