RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 NIP7Q9Y221 180 aaKnown RBP eCLIP11.96□□□□□ -0.49
MCF2-209ENST00000520602 SLFNL1Q499Z3 407 aa11.96□□□□□ -0.5
MCF2-209ENST00000520602 MAP4K1Q92918 833 aa11.96□□□□□ -0.5
MCF2-209ENST00000520602 RBSNQ9H1K0 784 aa11.96□□□□□ -0.5
MCF2-209ENST00000520602 CCDC39Q9UFE4 941 aa11.96□□□□□ -0.5
MCF2-209ENST00000520602 USP25Q9UHP3 1055 aa11.96□□□□□ -0.5
MCF2-209ENST00000520602 CFAP45Q9UL16 551 aa11.96□□□□□ -0.5
MCF2-209ENST00000520602 TPCN1Q9ULQ1 816 aa11.96□□□□□ -0.5
MCF2-209ENST00000520602 GOLGA8BA8MQT2 603 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 CCDC144CPQ8IYA2 1237 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 ZNF396Q96N95 335 aaPredicted RBP11.95□□□□□ -0.5
MCF2-209ENST00000520602 MTMR7Q9Y216 660 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 EPB41L2O43491 1005 aaKnown RBP11.95□□□□□ -0.5
MCF2-209ENST00000520602 SLC5A1P13866 664 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 CUL4AQ13619 759 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 GPT2Q8TD30 523 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 NACAP1Q9BZK3 213 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 NAPBQ9H115 298 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 ZSWIM6Q9HCJ5 1215 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 MINDY4BA8MYZ0 360 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 LARGE1O95461 756 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 MAP3K12Q12852 859 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 CHAF1AQ13111 956 aaPredicted RBP11.95□□□□□ -0.5
MCF2-209ENST00000520602 NUP133Q8WUM0 1156 aa11.95□□□□□ -0.5
MCF2-209ENST00000520602 GNL3LQ9NVN8 582 aaKnown RBP11.95□□□□□ -0.5
MCF2-209ENST00000520602 TAF5LO75529 589 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 DHX32Q7L7V1 743 aaKnown RBP11.94□□□□□ -0.5
MCF2-209ENST00000520602 SYNE4Q8N205 404 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 KAZALD1Q96I82 304 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 TM6SF1Q9BZW5 370 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 ZAP70P43403 619 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 SART3Q15020 963 aaKnown RBP11.94□□□□□ -0.5
MCF2-209ENST00000520602 MAP3K11Q16584 847 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 HAUS7Q99871 368 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 TRIM5Q9C035 493 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 DNAJC5Q9H3Z4 198 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 ZNF652Q9Y2D9 606 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 ERBB4Q15303 1308 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 LMTK3Q96Q04 1460 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 JAK2O60674 1132 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 C8orf37Q96NL8 207 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 NCOA5Q9HCD5 579 aaKnown RBP11.94□□□□□ -0.5
MCF2-209ENST00000520602 ZBTB1Q9Y2K1 713 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 PEAK1Q9H792 1746 aa11.94□□□□□ -0.5
MCF2-209ENST00000520602 CHGBP05060 677 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 ADORA1P30542 326 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 ZDHHC9Q9Y397 364 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 KNDC1Q76NI1 1749 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 KLF18A0A0U1RQI7 1052 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 POLR3DP05423 398 aaPredicted RBP11.93□□□□□ -0.5
MCF2-209ENST00000520602 ZFYP08048 801 aaPredicted RBP11.93□□□□□ -0.5
MCF2-209ENST00000520602 SAFBQ15424 915 aaKnown RBP eCLIP11.93□□□□□ -0.5
MCF2-209ENST00000520602 TTLL5Q6EMB2 1281 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 ZSCAN30Q86W11 494 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 C8orf76Q96K31 380 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 ANO8Q9HCE9 1232 aaPredicted RBP11.93□□□□□ -0.5
MCF2-209ENST00000520602 R3HCC1Q9Y3T6 440 aaKnown RBP11.93□□□□□ -0.5
MCF2-209ENST00000520602 FSD2A1L4K1 749 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 CCDC69A6NI79 296 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 H7C1W4 665 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 RGPD8O14715 1765 aaPredicted RBP11.93□□□□□ -0.5
MCF2-209ENST00000520602 PDIA4P13667 645 aaKnown RBP11.93□□□□□ -0.5
MCF2-209ENST00000520602 HMGN5P82970 282 aaKnown RBP11.93□□□□□ -0.5
MCF2-209ENST00000520602 DLG5Q8TDM6 1919 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 SALL3Q9BXA9 1300 aa11.93□□□□□ -0.5
MCF2-209ENST00000520602 NECTIN1Q15223 517 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 MICU3Q86XE3 530 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 NCOA7Q8NI08 942 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 UTP14AQ9BVJ6 771 aaKnown RBP11.92□□□□□ -0.5
MCF2-209ENST00000520602 HELLSQ9NRZ9 838 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 NSFL1CQ9UNZ2 370 aaKnown RBP11.92□□□□□ -0.5
MCF2-209ENST00000520602 CDC37L1Q7L3B6 337 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 GREM2Q9H772 168 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 RRAGDQ9NQL2 400 aaPredicted RBP11.92□□□□□ -0.5
MCF2-209ENST00000520602 ORC3Q9UBD5 711 aaPredicted RBP11.92□□□□□ -0.5
MCF2-209ENST00000520602 MCM5P33992 734 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 TTF1Q15361 905 aaPredicted RBP11.92□□□□□ -0.5
MCF2-209ENST00000520602 PI16Q6UXB8 463 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 AKAP12Q02952 1782 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 PRC1O43663 620 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 NRDCO43847 1150 aa11.92□□□□□ -0.5
MCF2-209ENST00000520602 ZBTB38Q8NAP3 1195 aaPredicted RBP11.92□□□□□ -0.5
MCF2-209ENST00000520602 CYP21A2P08686 494 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 CCDC152Q4G0S7 254 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 ZPR1O75312 459 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 RXRAP19793 462 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 TPM4P67936 248 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 HLFQ16534 295 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 DACT1Q9NYF0 836 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.91□□□□□ -0.5
MCF2-209ENST00000520602 SH3TC1Q8TE82 1336 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 PIK3C2AO00443 1686 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 PTPDC1A2A3K4 754 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 G3V3G9 751 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 IFIT3O14879 490 aaKnown RBP11.91□□□□□ -0.5
MCF2-209ENST00000520602 UQCRFS1P1P0C7P4 283 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 ZNF445P59923 1031 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 DCAF8Q5TAQ9 597 aa11.91□□□□□ -0.5
MCF2-209ENST00000520602 MEGF6O75095 1541 aa11.9□□□□□ -0.5
MCF2-209ENST00000520602 PDE8AO60658 829 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms