RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TTC37Q6PGP7 1564 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 NPHP3Q7Z494 1330 aa13.54□□□□□ -0.24
SYNPO-204ENST00000519664 SLC27A2O14975 620 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 SKILP12757 684 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 AFMP43652 599 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 AXDND1Q5T1B0 1012 aaPredicted RBP13.53□□□□□ -0.24
SYNPO-204ENST00000519664 DHX32Q7L7V1 743 aaKnown RBP13.53□□□□□ -0.24
SYNPO-204ENST00000519664 ERCC4Q92889 916 aaPredicted RBP13.53□□□□□ -0.24
SYNPO-204ENST00000519664 ZKSCAN3Q9BRR0 538 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 ZNF652Q9Y2D9 606 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.53□□□□□ -0.24
SYNPO-204ENST00000519664 PTH1RQ03431 593 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 DCAF5Q96JK2 942 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 A0A1B0GUL7 405 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 A0A1B0GVL5 298 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 JAK2O60674 1132 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 CCDC102BQ68D86 513 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 EAF2Q96CJ1 260 aaPredicted RBP13.53□□□□□ -0.24
SYNPO-204ENST00000519664 GTPBP4Q9BZE4 634 aaKnown RBP13.53□□□□□ -0.24
SYNPO-204ENST00000519664 ZNF219Q9P2Y4 722 aaPredicted RBP13.53□□□□□ -0.24
SYNPO-204ENST00000519664 STX8Q9UNK0 236 aa13.53□□□□□ -0.24
SYNPO-204ENST00000519664 FAM193AP78312 1265 aa13.52□□□□□ -0.24
SYNPO-204ENST00000519664 MPHOSPH10O00566 681 aaKnown RBP13.52□□□□□ -0.24
SYNPO-204ENST00000519664 CYP7A1P22680 504 aa13.52□□□□□ -0.24
SYNPO-204ENST00000519664 DNA2P51530 1060 aa13.52□□□□□ -0.24
SYNPO-204ENST00000519664 PROSER3Q2NL68 480 aa13.52□□□□□ -0.24
SYNPO-204ENST00000519664 NGLY1Q96IV0 654 aa13.52□□□□□ -0.24
SYNPO-204ENST00000519664 RAD50Q92878 1312 aa13.52□□□□□ -0.24
SYNPO-204ENST00000519664 TSPY2A6NKD2 308 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 TNNI3KQ59H18 835 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 PPP4R3BQ5MIZ7 849 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 MRPS27Q92552 414 aaKnown RBP13.52□□□□□ -0.25
SYNPO-204ENST00000519664 SEC62Q99442 399 aaKnown RBP13.52□□□□□ -0.25
SYNPO-204ENST00000519664 CEP131Q9UPN4 1083 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 FPGT-TNNI3KV9GXZ4 949 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 PRAMEF22A3QJZ6 481 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 MAPK8IP2Q13387 824 aaPredicted RBP13.52□□□□□ -0.25
SYNPO-204ENST00000519664 CT47A1Q5JQC4 288 aaPredicted RBP13.52□□□□□ -0.25
SYNPO-204ENST00000519664 ZFYVE27Q5T4F4 411 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 SIRT1Q96EB6 747 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 SLC4A4Q9Y6R1 1079 aa13.52□□□□□ -0.25
SYNPO-204ENST00000519664 TRMT1LQ7Z2T5 733 aaKnown RBP13.51□□□□□ -0.25
SYNPO-204ENST00000519664 CATIPQ7Z7H3 387 aa13.51□□□□□ -0.25
SYNPO-204ENST00000519664 PRR36Q9H6K5 1346 aa13.51□□□□□ -0.25
SYNPO-204ENST00000519664 RNF113AO15541 343 aaKnown RBP13.51□□□□□ -0.25
SYNPO-204ENST00000519664 WTAPQ15007 396 aa13.51□□□□□ -0.25
SYNPO-204ENST00000519664 TTF1Q15361 905 aaPredicted RBP13.51□□□□□ -0.25
SYNPO-204ENST00000519664 ZNF444Q8N0Y2 327 aaPredicted RBP13.51□□□□□ -0.25
SYNPO-204ENST00000519664 TEX13AQ9BXU3 409 aaPredicted RBP13.51□□□□□ -0.25
SYNPO-204ENST00000519664 RNF41Q9H4P4 317 aaPredicted RBP13.51□□□□□ -0.25
SYNPO-204ENST00000519664 HSPA4P34932 840 aa13.51□□□□□ -0.25
SYNPO-204ENST00000519664 GCKRQ14397 625 aa13.51□□□□□ -0.25
SYNPO-204ENST00000519664 KIF4BQ2VIQ3 1234 aa13.51□□□□□ -0.25
SYNPO-204ENST00000519664 RASEFQ8IZ41 740 aa13.51□□□□□ -0.25
SYNPO-204ENST00000519664 SSH3Q8TE77 659 aa13.51□□□□□ -0.25
SYNPO-204ENST00000519664 METTL22Q9BUU2 404 aaPredicted RBP13.51□□□□□ -0.25
SYNPO-204ENST00000519664 KDM5AP29375 1690 aaKnown RBP13.5□□□□□ -0.25
SYNPO-204ENST00000519664 IRS4O14654 1257 aaPredicted RBP13.5□□□□□ -0.25
SYNPO-204ENST00000519664 IL2RBP14784 551 aa13.5□□□□□ -0.25
SYNPO-204ENST00000519664 CDC37L1Q7L3B6 337 aa13.5□□□□□ -0.25
SYNPO-204ENST00000519664 ACBD3Q9H3P7 528 aa13.5□□□□□ -0.25
SYNPO-204ENST00000519664 ANTXR1Q9H6X2 564 aa13.5□□□□□ -0.25
SYNPO-204ENST00000519664 NIP7Q9Y221 180 aaKnown RBP eCLIP13.5□□□□□ -0.25
SYNPO-204ENST00000519664 KDM5DQ9BY66 1539 aa13.5□□□□□ -0.25
SYNPO-204ENST00000519664 SPTLC2O15270 562 aa13.5□□□□□ -0.25
SYNPO-204ENST00000519664 GIGYF1O75420 1035 aaPredicted RBP13.5□□□□□ -0.25
SYNPO-204ENST00000519664 ATP6V1AP38606 617 aa13.5□□□□□ -0.25
SYNPO-204ENST00000519664 CCDC194A0A1B0GVG4 234 aa13.5□□□□□ -0.25
SYNPO-204ENST00000519664 IGSF3O75054 1194 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 ZFYP08048 801 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-204ENST00000519664 RPS6KB1P23443 525 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 UBASH3AP57075 661 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 C6orf229H3BNL8 230 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 POLR3GO15318 223 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-204ENST00000519664 ME3Q16798 604 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 KIAA1328Q86T90 577 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 DZIP3Q86Y13 1208 aaKnown RBP13.49□□□□□ -0.25
SYNPO-204ENST00000519664 TMEM2Q9UHN6 1383 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 IDEP14735 1019 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 AK7Q96M32 723 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 CCDC94Q9BW85 323 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-204ENST00000519664 CALCOCO1Q9P1Z2 691 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 TRPM2O94759 1503 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 A0A0D9SFI3 127 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 SNW1Q13573 536 aaKnown RBP13.49□□□□□ -0.25
SYNPO-204ENST00000519664 CEP135Q66GS9 1140 aa13.49□□□□□ -0.25
SYNPO-204ENST00000519664 CDC5LQ99459 802 aaKnown RBP13.49□□□□□ -0.25
SYNPO-204ENST00000519664 EYA2O00167 538 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 BRD1O95696 1058 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 MAGEB6Q8N7X4 407 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 ERCC6L2Q5T890 1561 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 CCDC102AQ96A19 550 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 NUP88Q99567 741 aaPredicted RBP13.48□□□□□ -0.25
SYNPO-204ENST00000519664 CENPHQ9H3R5 247 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 B4E1Z4 1266 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 ADCK5Q3MIX3 580 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 CCDC181Q5TID7 509 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 TMCO3Q6UWJ1 677 aa13.48□□□□□ -0.25
SYNPO-204ENST00000519664 RNF216Q9NWF9 866 aaPredicted RBP13.48□□□□□ -0.25
SYNPO-204ENST00000519664 KIAA0232Q92628 1395 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms