RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 HYPKQ9NX55 129 aa20.51■□□□□ 0.87
LMNA-223ENST00000515459 TRIM35Q9UPQ4 493 aa20.51■□□□□ 0.87
LMNA-223ENST00000515459 FAM155AB1AL88 458 aaPredicted RBP20.5■□□□□ 0.87
LMNA-223ENST00000515459 ADM5C9JUS6 153 aa20.5■□□□□ 0.87
LMNA-223ENST00000515459 IRS4O14654 1257 aaPredicted RBP20.5■□□□□ 0.87
LMNA-223ENST00000515459 RPS8P62241 208 aaKnown RBP20.5■□□□□ 0.87
LMNA-223ENST00000515459 TBC1D16Q8TBP0 767 aa20.5■□□□□ 0.87
LMNA-223ENST00000515459 CCDC102AQ96A19 550 aa20.5■□□□□ 0.87
LMNA-223ENST00000515459 SCN9AQ15858 1988 aa20.49■□□□□ 0.87
LMNA-223ENST00000515459 TRIM28Q13263 835 aaKnown RBP20.49■□□□□ 0.87
LMNA-223ENST00000515459 RUNDC1Q96C34 613 aa20.49■□□□□ 0.87
LMNA-223ENST00000515459 ZC3H12CQ9C0D7 883 aaKnown RBP20.49■□□□□ 0.87
LMNA-223ENST00000515459 ZNF157P51786 506 aaPredicted RBP20.48■□□□□ 0.87
LMNA-223ENST00000515459 KIF4BQ2VIQ3 1234 aa20.48■□□□□ 0.87
LMNA-223ENST00000515459 SAGE1Q9NXZ1 904 aa20.48■□□□□ 0.87
LMNA-223ENST00000515459 AKAP11Q9UKA4 1901 aa20.48■□□□□ 0.87
LMNA-223ENST00000515459 G3V3G9 751 aa20.47■□□□□ 0.87
LMNA-223ENST00000515459 VIL1P09327 827 aaKnown RBP20.47■□□□□ 0.87
LMNA-223ENST00000515459 KIF23Q02241 960 aaPredicted RBP20.47■□□□□ 0.87
LMNA-223ENST00000515459 DCAF8Q5TAQ9 597 aa20.47■□□□□ 0.87
LMNA-223ENST00000515459 DUSP27Q5VZP5 1158 aa20.47■□□□□ 0.87
LMNA-223ENST00000515459 SULF1Q8IWU6 871 aa20.47■□□□□ 0.87
LMNA-223ENST00000515459 PODXL2Q9NZ53 605 aa20.47■□□□□ 0.87
LMNA-223ENST00000515459 HSP90B1P14625 803 aaKnown RBP20.46■□□□□ 0.87
LMNA-223ENST00000515459 GGA3Q9NZ52 723 aa20.46■□□□□ 0.87
LMNA-223ENST00000515459 ANKIB1Q9P2G1 1089 aa20.46■□□□□ 0.87
LMNA-223ENST00000515459 MYBBP1AQ9BQG0 1328 aaKnown RBP20.46■□□□□ 0.87
LMNA-223ENST00000515459 WDR43Q15061 677 aaKnown RBP eCLIP20.45■□□□□ 0.86
LMNA-223ENST00000515459 RIC3Q7Z5B4 369 aa20.45■□□□□ 0.86
LMNA-223ENST00000515459 ZBTB38Q8NAP3 1195 aaPredicted RBP20.45■□□□□ 0.86
LMNA-223ENST00000515459 PSME4Q14997 1843 aa20.44■□□□□ 0.86
LMNA-223ENST00000515459 UFL1O94874 794 aa20.44■□□□□ 0.86
LMNA-223ENST00000515459 SEC31BQ9NQW1 1179 aa20.44■□□□□ 0.86
LMNA-223ENST00000515459 RNF186Q9NXI6 227 aa20.44■□□□□ 0.86
LMNA-223ENST00000515459 TRPA1O75762 1119 aa20.43■□□□□ 0.86
LMNA-223ENST00000515459 SLC10A3P09131 477 aa20.43■□□□□ 0.86
LMNA-223ENST00000515459 GOLGA2Q08379 1002 aa20.43■□□□□ 0.86
LMNA-223ENST00000515459 GGA1Q9UJY5 639 aa20.43■□□□□ 0.86
LMNA-223ENST00000515459 CCDC152Q4G0S7 254 aa20.42■□□□□ 0.86
LMNA-223ENST00000515459 AGBL3Q8NEM8 1001 aa20.42■□□□□ 0.86
LMNA-223ENST00000515459 CDCA5Q96FF9 252 aa20.42■□□□□ 0.86
LMNA-223ENST00000515459 MBIPQ9NS73 344 aa20.42■□□□□ 0.86
LMNA-223ENST00000515459 ASTN2O75129 1339 aaPredicted RBP20.42■□□□□ 0.86
LMNA-223ENST00000515459 ZNF609O15014 1411 aa20.42■□□□□ 0.86
LMNA-223ENST00000515459 ZNF280AP59817 542 aaPredicted RBP20.41■□□□□ 0.86
LMNA-223ENST00000515459 ANGEL2Q5VTE6 544 aaKnown RBP20.41■□□□□ 0.86
LMNA-223ENST00000515459 RSBN1LQ6PCB5 846 aaPredicted RBP20.41■□□□□ 0.86
LMNA-223ENST00000515459 CSRNP1Q96S65 589 aa20.41■□□□□ 0.86
LMNA-223ENST00000515459 PHAXQ9H814 394 aaKnown RBP20.41■□□□□ 0.86
LMNA-223ENST00000515459 ADAMTS8Q9UP79 889 aa20.41■□□□□ 0.86
LMNA-223ENST00000515459 PDE8AO60658 829 aa20.4■□□□□ 0.86
LMNA-223ENST00000515459 SCARF1Q14162 830 aa20.4■□□□□ 0.86
LMNA-223ENST00000515459 REM2Q8IYK8 340 aaPredicted RBP20.4■□□□□ 0.86
LMNA-223ENST00000515459 CCDC191Q8NCU4 936 aa20.4■□□□□ 0.86
LMNA-223ENST00000515459 MYD88Q99836 296 aa20.4■□□□□ 0.86
LMNA-223ENST00000515459 XDHP47989 1333 aa20.39■□□□□ 0.85
LMNA-223ENST00000515459 PCCAP05165 728 aaPredicted RBP20.39■□□□□ 0.85
LMNA-223ENST00000515459 FKBP1BP68106 108 aa20.39■□□□□ 0.85
LMNA-223ENST00000515459 USP17L8P0C7I0 530 aa20.38■□□□□ 0.85
LMNA-223ENST00000515459 RASAL3Q86YV0 1011 aa20.38■□□□□ 0.85
LMNA-223ENST00000515459 MYOZ2Q9NPC6 264 aa20.38■□□□□ 0.85
LMNA-223ENST00000515459 PAPPA2Q9BXP8 1791 aa20.38■□□□□ 0.85
LMNA-223ENST00000515459 PITPNM2Q9BZ72 1349 aa20.37■□□□□ 0.85
LMNA-223ENST00000515459 ZNF853P0CG23 659 aa20.37■□□□□ 0.85
LMNA-223ENST00000515459 ANKRD18AQ8IVF6 992 aa20.37■□□□□ 0.85
LMNA-223ENST00000515459 CCDC85AQ96PX6 553 aaPredicted RBP20.37■□□□□ 0.85
LMNA-223ENST00000515459 CWC25Q9NXE8 425 aaPredicted RBP20.37■□□□□ 0.85
LMNA-223ENST00000515459 USP17L3A6NCW0 530 aa20.36■□□□□ 0.85
LMNA-223ENST00000515459 USP17L4A6NCW7 530 aa20.36■□□□□ 0.85
LMNA-223ENST00000515459 ELL2O00472 640 aaPredicted RBP20.36■□□□□ 0.85
LMNA-223ENST00000515459 USP17L1Q7RTZ2 530 aa20.36■□□□□ 0.85
LMNA-223ENST00000515459 PODNQ7Z5L7 613 aa20.36■□□□□ 0.85
LMNA-223ENST00000515459 JARID2Q92833 1246 aaPredicted RBP20.36■□□□□ 0.85
LMNA-223ENST00000515459 GMLQ99445 158 aa20.36■□□□□ 0.85
LMNA-223ENST00000515459 ATP2B4P23634 1241 aa20.35■□□□□ 0.85
LMNA-223ENST00000515459 SOX10P56693 466 aa20.35■□□□□ 0.85
LMNA-223ENST00000515459 GNAI1P63096 354 aa20.35■□□□□ 0.85
LMNA-223ENST00000515459 DDX10Q13206 875 aaKnown RBP20.35■□□□□ 0.85
LMNA-223ENST00000515459 CTU1Q7Z7A3 348 aaKnown RBP20.35■□□□□ 0.85
LMNA-223ENST00000515459 METTL22Q9BUU2 404 aaPredicted RBP20.35■□□□□ 0.85
LMNA-223ENST00000515459 IFT57Q9NWB7 429 aa20.35■□□□□ 0.85
LMNA-223ENST00000515459 DDX58O95786 925 aaKnown RBP20.34■□□□□ 0.85
LMNA-223ENST00000515459 CALD1Q05682 793 aaKnown RBP20.34■□□□□ 0.85
LMNA-223ENST00000515459 MYH3P11055 1940 aa20.33■□□□□ 0.85
LMNA-223ENST00000515459 SPEF2Q9C093 1822 aa20.33■□□□□ 0.85
LMNA-223ENST00000515459 CDC5LQ99459 802 aaKnown RBP20.33■□□□□ 0.85
LMNA-223ENST00000515459 TNRC18O15417 2968 aaPredicted RBP20.33■□□□□ 0.84
LMNA-223ENST00000515459 CHMP4AQ9BY43 222 aa20.32■□□□□ 0.84
LMNA-223ENST00000515459 PDE4DIPQ5VU43 2346 aa20.32■□□□□ 0.84
LMNA-223ENST00000515459 MED23Q9ULK4 1368 aa20.32■□□□□ 0.84
LMNA-223ENST00000515459 CTSWP56202 376 aa20.31■□□□□ 0.84
LMNA-223ENST00000515459 CCDC30Q5VVM6 783 aa20.31■□□□□ 0.84
LMNA-223ENST00000515459 SCAF8Q9UPN6 1271 aaKnown RBP20.31■□□□□ 0.84
LMNA-223ENST00000515459 MAP3K2Q9Y2U5 619 aa20.31■□□□□ 0.84
LMNA-223ENST00000515459 ZNF646O15015 1829 aaPredicted RBP20.3■□□□□ 0.84
LMNA-223ENST00000515459 APAF1O14727 1248 aa20.3■□□□□ 0.84
LMNA-223ENST00000515459 NBPF9Q3BBW0 867 aa20.3■□□□□ 0.84
LMNA-223ENST00000515459 MOB2Q70IA6 237 aa20.3■□□□□ 0.84
LMNA-223ENST00000515459 OGFOD1Q8N543 542 aa20.3■□□□□ 0.84
LMNA-223ENST00000515459 C8orf58Q8NAV2 365 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms