RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 GPSM2P81274 684 aa17.84■□□□□ 0.45
NUP54-216ENST00000514901 LDHAL6AQ6ZMR3 332 aa17.84■□□□□ 0.45
NUP54-216ENST00000514901 EYA3Q99504 573 aa17.84■□□□□ 0.45
NUP54-216ENST00000514901 ATP2B4P23634 1241 aa17.83■□□□□ 0.44
NUP54-216ENST00000514901 JDP2Q8WYK2 163 aa17.83■□□□□ 0.44
NUP54-216ENST00000514901 GGA1Q9UJY5 639 aa17.83■□□□□ 0.44
NUP54-216ENST00000514901 CCDC88AQ3V6T2 1871 aa17.82■□□□□ 0.44
NUP54-216ENST00000514901 LRRC37AA6NMS7 1700 aa17.82■□□□□ 0.44
NUP54-216ENST00000514901 C6orf229H3BNL8 230 aa17.82■□□□□ 0.44
NUP54-216ENST00000514901 MVPQ14764 893 aaKnown RBP17.82■□□□□ 0.44
NUP54-216ENST00000514901 SLC51AQ86UW1 340 aa17.82■□□□□ 0.44
NUP54-216ENST00000514901 LARGE2Q8N3Y3 721 aa17.82■□□□□ 0.44
NUP54-216ENST00000514901 TBC1D16Q8TBP0 767 aa17.82■□□□□ 0.44
NUP54-216ENST00000514901 CNNM1Q9NRU3 951 aa17.82■□□□□ 0.44
NUP54-216ENST00000514901 DDX19BQ9UMR2 479 aa17.82■□□□□ 0.44
NUP54-216ENST00000514901 PPIP5K2O43314 1243 aa17.81■□□□□ 0.44
NUP54-216ENST00000514901 MTX1Q13505 466 aa17.81■□□□□ 0.44
NUP54-216ENST00000514901 ZNF594Q96JF6 807 aaPredicted RBP17.81■□□□□ 0.44
NUP54-216ENST00000514901 POLLQ9UGP5 575 aa17.81■□□□□ 0.44
NUP54-216ENST00000514901 LEMD3Q9Y2U8 911 aa17.81■□□□□ 0.44
NUP54-216ENST00000514901 COL4A1P02462 1669 aa17.8■□□□□ 0.44
NUP54-216ENST00000514901 DICER1Q9UPY3 1922 aaKnown RBP17.8■□□□□ 0.44
NUP54-216ENST00000514901 UFL1O94874 794 aa17.8■□□□□ 0.44
NUP54-216ENST00000514901 CHRNDQ07001 517 aa17.8■□□□□ 0.44
NUP54-216ENST00000514901 KIAA2012Q0VF49 1180 aa17.8■□□□□ 0.44
NUP54-216ENST00000514901 WASHC4Q2M389 1173 aa17.8■□□□□ 0.44
NUP54-216ENST00000514901 ZC3H12CQ9C0D7 883 aaKnown RBP17.8■□□□□ 0.44
NUP54-216ENST00000514901 FBXO3Q9UK99 471 aa17.8■□□□□ 0.44
NUP54-216ENST00000514901 RFX5P48382 616 aaPredicted RBP17.79■□□□□ 0.44
NUP54-216ENST00000514901 RRP1P56182 461 aaKnown RBP17.79■□□□□ 0.44
NUP54-216ENST00000514901 DPY19L2Q6NUT2 758 aa17.79■□□□□ 0.44
NUP54-216ENST00000514901 NIM1KQ8IY84 436 aa17.79■□□□□ 0.44
NUP54-216ENST00000514901 COG6Q9Y2V7 657 aa17.79■□□□□ 0.44
NUP54-216ENST00000514901 MROH5Q6ZUA9 1318 aa17.78■□□□□ 0.44
NUP54-216ENST00000514901 FZD9O00144 591 aa17.78■□□□□ 0.44
NUP54-216ENST00000514901 SRGAP3O43295 1099 aa17.78■□□□□ 0.44
NUP54-216ENST00000514901 PTPN12Q05209 780 aaKnown RBP17.78■□□□□ 0.44
NUP54-216ENST00000514901 AOC3Q16853 763 aa17.78■□□□□ 0.44
NUP54-216ENST00000514901 RIPOR2Q9Y4F9 1068 aa17.78■□□□□ 0.44
NUP54-216ENST00000514901 GLTPD2A6NH11 291 aa17.77■□□□□ 0.44
NUP54-216ENST00000514901 KCNJ4P48050 445 aa17.77■□□□□ 0.44
NUP54-216ENST00000514901 EIF6P56537 245 aaKnown RBP17.77■□□□□ 0.44
NUP54-216ENST00000514901 ATP8B2P98198 1209 aa17.77■□□□□ 0.44
NUP54-216ENST00000514901 COPRSQ9NQ92 184 aa17.77■□□□□ 0.44
NUP54-216ENST00000514901 ZNRF3Q9ULT6 936 aa17.77■□□□□ 0.44
NUP54-216ENST00000514901 ZNF804BA4D1E1 1349 aa17.76■□□□□ 0.43
NUP54-216ENST00000514901 KDM2BQ8NHM5 1336 aa17.76■□□□□ 0.43
NUP54-216ENST00000514901 EYA2O00167 538 aa17.76■□□□□ 0.43
NUP54-216ENST00000514901 CIAO1O76071 339 aa17.76■□□□□ 0.43
NUP54-216ENST00000514901 C20orf194Q5TEA3 1177 aa17.76■□□□□ 0.43
NUP54-216ENST00000514901 ZNF784Q8NCA9 323 aaPredicted RBP17.76■□□□□ 0.43
NUP54-216ENST00000514901 PUS3Q9BZE2 481 aaKnown RBP17.76■□□□□ 0.43
NUP54-216ENST00000514901 SPEF2Q9C093 1822 aa17.75■□□□□ 0.43
NUP54-216ENST00000514901 G3V3G9 751 aa17.75■□□□□ 0.43
NUP54-216ENST00000514901 RIMBP2O15034 1052 aa17.75■□□□□ 0.43
NUP54-216ENST00000514901 METTL24Q5JXM2 366 aa17.75■□□□□ 0.43
NUP54-216ENST00000514901 DCAF8Q5TAQ9 597 aa17.75■□□□□ 0.43
NUP54-216ENST00000514901 KLHDC4Q8TBB5 520 aa17.75■□□□□ 0.43
NUP54-216ENST00000514901 ZBTB40Q9NUA8 1239 aa17.75■□□□□ 0.43
NUP54-216ENST00000514901 LTBP1Q14766 1721 aa17.75■□□□□ 0.43
NUP54-216ENST00000514901 DUOX1Q9NRD9 1551 aa17.74■□□□□ 0.43
NUP54-216ENST00000514901 TAF5LO75529 589 aa17.74■□□□□ 0.43
NUP54-216ENST00000514901 UBE4AQ14139 1066 aa17.74■□□□□ 0.43
NUP54-216ENST00000514901 LRRC24Q50LG9 513 aa17.74■□□□□ 0.43
NUP54-216ENST00000514901 C15orf52Q6ZUT6 534 aaKnown RBP17.74■□□□□ 0.43
NUP54-216ENST00000514901 HELBQ8NG08 1087 aaPredicted RBP17.74■□□□□ 0.43
NUP54-216ENST00000514901 GPBP1L1Q9HC44 474 aaPredicted RBP17.74■□□□□ 0.43
NUP54-216ENST00000514901 MED23Q9ULK4 1368 aa17.74■□□□□ 0.43
NUP54-216ENST00000514901 IL15P40933 162 aaPredicted RBP17.73■□□□□ 0.43
NUP54-216ENST00000514901 RPAP2Q8IXW5 612 aaPredicted RBP17.73■□□□□ 0.43
NUP54-216ENST00000514901 SSH3Q8TE77 659 aa17.73■□□□□ 0.43
NUP54-216ENST00000514901 C1orf115Q9H7X2 142 aa17.73■□□□□ 0.43
NUP54-216ENST00000514901 PNMA6EA0A0J9YXQ4 647 aa17.72■□□□□ 0.43
NUP54-216ENST00000514901 PDE8BO95263 885 aa17.72■□□□□ 0.43
NUP54-216ENST00000514901 POLA2Q14181 598 aa17.72■□□□□ 0.43
NUP54-216ENST00000514901 TNIP1Q15025 636 aa17.72■□□□□ 0.43
NUP54-216ENST00000514901 PODNQ7Z5L7 613 aa17.72■□□□□ 0.43
NUP54-216ENST00000514901 GPC2Q8N158 579 aa17.72■□□□□ 0.43
NUP54-216ENST00000514901 GPR101Q96P66 508 aaPredicted RBP17.72■□□□□ 0.43
NUP54-216ENST00000514901 CEP126Q9P2H0 1117 aa17.72■□□□□ 0.43
NUP54-216ENST00000514901 DOK7Q18PE1 504 aa17.71■□□□□ 0.43
NUP54-216ENST00000514901 CEP85Q6P2H3 762 aa17.71■□□□□ 0.43
NUP54-216ENST00000514901 ATG9AQ7Z3C6 839 aa17.71■□□□□ 0.43
NUP54-216ENST00000514901 ZNF526Q8TF50 670 aaPredicted RBP17.71■□□□□ 0.43
NUP54-216ENST00000514901 COA1Q9GZY4 146 aa17.71■□□□□ 0.43
NUP54-216ENST00000514901 SIL1Q9H173 461 aa17.71■□□□□ 0.43
NUP54-216ENST00000514901 DBNDD1Q9H9R9 158 aa17.71■□□□□ 0.43
NUP54-216ENST00000514901 PA2G4Q9UQ80 394 aaKnown RBP17.71■□□□□ 0.43
NUP54-216ENST00000514901 TIAM2Q8IVF5 1701 aa17.71■□□□□ 0.43
NUP54-216ENST00000514901 WTIPA6NIX2 430 aaPredicted RBP17.7■□□□□ 0.42
NUP54-216ENST00000514901 ECE2O60344 883 aa17.7■□□□□ 0.42
NUP54-216ENST00000514901 CXCL9Q07325 125 aa17.7■□□□□ 0.42
NUP54-216ENST00000514901 G3BP1Q13283 466 aaKnown RBP eCLIP17.7■□□□□ 0.42
NUP54-216ENST00000514901 CIAPIN1Q6FI81 312 aa17.7■□□□□ 0.42
NUP54-216ENST00000514901 VGLL2Q8N8G2 317 aa17.7■□□□□ 0.42
NUP54-216ENST00000514901 ZNF541Q9H0D2 1346 aa17.7■□□□□ 0.42
NUP54-216ENST00000514901 COL4A5P29400 1685 aa17.69■□□□□ 0.42
NUP54-216ENST00000514901 YDJCA8MPS7 323 aa17.69■□□□□ 0.42
NUP54-216ENST00000514901 HMMRO75330 724 aa17.69■□□□□ 0.42
NUP54-216ENST00000514901 DDNO94850 711 aaPredicted RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms