RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 METAP2P50579 478 aaKnown RBP eCLIP9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 ZSWIM6Q9HCJ5 1215 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 METP08581 1390 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 IFIT3O14879 490 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 SPTLC2O15270 562 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 DNAI1Q9UI46 699 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 IQSEC2Q5JU85 1478 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 MARCKSP29966 332 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 SSRP1Q08945 709 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 TPCN1Q9ULQ1 816 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 ZDHHC9Q9Y397 364 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 NEO1Q92859 1461 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 JAK2O60674 1132 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 LMOD1P29536 600 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 IL15P40933 162 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 NFATC2IPQ8NCF5 419 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 FEZ1Q99689 392 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 LRP2BPQ9P2M1 347 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 CDK12Q9NYV4 1490 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 FAM160A1Q05DH4 1040 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 BEND3Q5T5X7 828 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 BCL2L12Q9HB09 334 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 ZNHIT6Q9NWK9 470 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 CPSF1Q10570 1443 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 ADCK5Q3MIX3 580 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 CPLX3Q8WVH0 158 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 GNL3LQ9NVN8 582 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 OGFRQ9NZT2 677 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 IFNKQ9P0W0 207 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 TBX22Q9Y458 520 aa9.73□□□□□ -0.85
LIMCH1-216ENST00000512820 KCNQ3O43525 872 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 KIF5CO60282 957 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 KCNA6P17658 529 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 U2AF2P26368 475 aaKnown RBP eCLIP9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 GNG11P61952 73 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 TTC6Q86TZ1 520 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 ZNF397Q8NF99 534 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 ALG1Q9BT22 464 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 CCDC196A0A1B0GTZ2 297 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 A0A1B0GVL5 298 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 PRC1O43663 620 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 KIF4BQ2VIQ3 1234 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 TNNI3KQ59H18 835 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 TMEM67Q5HYA8 995 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 NBPF6Q5VWK0 638 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 NBPF4Q96M43 638 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 FPGT-TNNI3KV9GXZ4 949 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 ABCC3O15438 1527 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 RNF113AO15541 343 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 STARD3NLO95772 234 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 ZFYP08048 801 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 ATL3Q6DD88 541 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 DBNDD2Q9BQY9 259 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 MED14O60244 1454 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 CLSTN1O94985 981 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 GCP02774 474 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 SETQ01105 290 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 LDHAL6AQ6ZMR3 332 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 NDUFB9Q9Y6M9 179 aa9.72□□□□□ -0.85
LIMCH1-216ENST00000512820 ARAP3Q8WWN8 1544 aa9.71□□□□□ -0.85
LIMCH1-216ENST00000512820 STIM1Q13586 685 aa9.71□□□□□ -0.85
LIMCH1-216ENST00000512820 HSP90AA4PQ58FG1 418 aa9.71□□□□□ -0.85
LIMCH1-216ENST00000512820 CCDC102AQ96A19 550 aa9.71□□□□□ -0.85
LIMCH1-216ENST00000512820 EAF2Q96CJ1 260 aaPredicted RBP9.71□□□□□ -0.85
LIMCH1-216ENST00000512820 PDLIM2Q96JY6 352 aa9.71□□□□□ -0.85
LIMCH1-216ENST00000512820 SLC26A6Q9BXS9 759 aa9.71□□□□□ -0.85
LIMCH1-216ENST00000512820 RAI14Q9P0K7 980 aa9.71□□□□□ -0.85
LIMCH1-216ENST00000512820 A0A0D9SFI3 127 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 GOLGA6L9A6NEM1 432 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 MAP3K12Q12852 859 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 EDC3Q96F86 508 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 LLPHQ9BRT6 129 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 NCOA5Q9HCD5 579 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 CALCOCO1Q9P1Z2 691 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 GLI2P10070 1586 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 MINDY4BA8MYZ0 360 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 DDIT3P35638 169 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 SKIDA1Q1XH10 827 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 SYT10Q6XYQ8 523 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 PYCARDQ9ULZ3 195 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 SETBP1Q9Y6X0 1596 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 PRR36Q9H6K5 1346 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 CYP2E1P05181 493 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 ABCF2Q9UG63 623 aa9.71□□□□□ -0.86
LIMCH1-216ENST00000512820 ADGRB3O60242 1522 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 ANKRD18BA2A2Z9 1011 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 GTF2F1P35269 517 aaKnown RBP eCLIP9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 AXDND1Q5T1B0 1012 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 NR1I2O75469 434 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 GPTP24298 496 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 LRMPQ12912 555 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 METTL22Q9BUU2 404 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 HELLSQ9NRZ9 838 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 TIMM10P62072 90 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 TTF1Q15361 905 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 CHRNA2Q15822 529 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 JAKMIP3Q5VZ66 844 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 TMOD3Q9NYL9 352 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 TULP4Q9NRJ4 1543 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 ZBTB43O43298 467 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms