RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 ECE2O60344 883 aa16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 HIRAP54198 1017 aaPredicted RBP16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 CTSWP56202 376 aa16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 CWF19L2Q2TBE0 894 aaKnown RBP16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 MICALL2Q8IY33 904 aa16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 EYA3Q99504 573 aa16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 PGAP2Q9UHJ9 254 aa16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 ABT1Q9ULW3 272 aaKnown RBP16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 ZBTB12Q9Y330 459 aaPredicted RBP16.7■□□□□ 0.26
HMGCS1-205ENST00000508319 NEURL1BA8MQ27 555 aa16.69■□□□□ 0.26
HMGCS1-205ENST00000508319 UFL1O94874 794 aa16.69■□□□□ 0.26
HMGCS1-205ENST00000508319 SLC4A2P04920 1241 aa16.69■□□□□ 0.26
HMGCS1-205ENST00000508319 NEXNQ0ZGT2 675 aa16.69■□□□□ 0.26
HMGCS1-205ENST00000508319 DEFB115Q30KQ5 88 aa16.69■□□□□ 0.26
HMGCS1-205ENST00000508319 CST9Q5W186 159 aa16.69■□□□□ 0.26
HMGCS1-205ENST00000508319 KCNQ5Q9NR82 932 aa16.69■□□□□ 0.26
HMGCS1-205ENST00000508319 CNOT7Q9UIV1 285 aaKnown RBP16.69■□□□□ 0.26
HMGCS1-205ENST00000508319 FLIIQ13045 1269 aa16.68■□□□□ 0.26
HMGCS1-205ENST00000508319 DOK7Q18PE1 504 aa16.68■□□□□ 0.26
HMGCS1-205ENST00000508319 WDR63Q8IWG1 891 aa16.68■□□□□ 0.26
HMGCS1-205ENST00000508319 ZC3H15Q8WU90 426 aaKnown RBP16.68■□□□□ 0.26
HMGCS1-205ENST00000508319 DPF2Q92785 391 aa16.68■□□□□ 0.26
HMGCS1-205ENST00000508319 ANKIB1Q9P2G1 1089 aa16.68■□□□□ 0.26
HMGCS1-205ENST00000508319 GGA1Q9UJY5 639 aa16.68■□□□□ 0.26
HMGCS1-205ENST00000508319 FOXN1O15353 648 aa16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 ANKRD18AQ8IVF6 992 aa16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 TTLL11Q8NHH1 800 aa16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 GLIS2Q9BZE0 524 aaPredicted RBP16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 GREM2Q9H772 168 aa16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 SALL2Q9Y467 1007 aaPredicted RBP16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 ZNF609O15014 1411 aa16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 XDHP47989 1333 aa16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 WDR33Q9C0J8 1336 aaKnown RBP16.67■□□□□ 0.26
HMGCS1-205ENST00000508319 ZNF646O15015 1829 aaPredicted RBP16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 H7C1D1 291 aa16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 EGFRP00533 1210 aa16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 RPS12P25398 132 aaKnown RBP16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 TNS4Q8IZW8 715 aa16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 CDC5LQ99459 802 aaKnown RBP16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 SPINK5Q9NQ38 1064 aaPredicted RBP16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 WBP1LQ9NX94 342 aa16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 TLL2Q9Y6L7 1015 aa16.66■□□□□ 0.26
HMGCS1-205ENST00000508319 H7C1W4 665 aa16.65■□□□□ 0.26
HMGCS1-205ENST00000508319 VAMP4O75379 141 aa16.65■□□□□ 0.26
HMGCS1-205ENST00000508319 EXOSC9Q06265 439 aaKnown RBP16.65■□□□□ 0.26
HMGCS1-205ENST00000508319 FKBP5Q13451 457 aaPredicted RBP16.65■□□□□ 0.26
HMGCS1-205ENST00000508319 SAMD7Q7Z3H4 446 aa16.65■□□□□ 0.26
HMGCS1-205ENST00000508319 UBE3BQ7Z3V4 1068 aa16.65■□□□□ 0.26
HMGCS1-205ENST00000508319 DNAAF4Q8WXU2 420 aa16.65■□□□□ 0.26
HMGCS1-205ENST00000508319 ZC3H12CQ9C0D7 883 aaKnown RBP16.65■□□□□ 0.26
HMGCS1-205ENST00000508319 POLR2AP24928 1970 aaKnown RBP16.64■□□□□ 0.25
HMGCS1-205ENST00000508319 CELF2O95319 508 aaKnown RBP16.64■□□□□ 0.25
HMGCS1-205ENST00000508319 VIL1P09327 827 aaKnown RBP16.64■□□□□ 0.25
HMGCS1-205ENST00000508319 CASP7P55210 303 aa16.64■□□□□ 0.25
HMGCS1-205ENST00000508319 GCKRQ14397 625 aa16.64■□□□□ 0.25
HMGCS1-205ENST00000508319 TBC1D10BQ4KMP7 808 aaPredicted RBP16.64■□□□□ 0.25
HMGCS1-205ENST00000508319 CAPNS2Q96L46 248 aa16.64■□□□□ 0.25
HMGCS1-205ENST00000508319 PLA2G12BQ9BX93 195 aa16.64■□□□□ 0.25
HMGCS1-205ENST00000508319 WTIPA6NIX2 430 aaPredicted RBP16.63■□□□□ 0.25
HMGCS1-205ENST00000508319 CYP4F22Q6NT55 531 aa16.63■□□□□ 0.25
HMGCS1-205ENST00000508319 CDC37L1Q7L3B6 337 aa16.63■□□□□ 0.25
HMGCS1-205ENST00000508319 SAPCD2Q86UD0 394 aa16.63■□□□□ 0.25
HMGCS1-205ENST00000508319 LINS1Q8NG48 757 aa16.63■□□□□ 0.25
HMGCS1-205ENST00000508319 AIDAQ96BJ3 306 aa16.63■□□□□ 0.25
HMGCS1-205ENST00000508319 BSDC1Q9NW68 430 aaPredicted RBP16.63■□□□□ 0.25
HMGCS1-205ENST00000508319 MED23Q9ULK4 1368 aa16.63■□□□□ 0.25
HMGCS1-205ENST00000508319 A0A1B0GUL6 1792 aa16.62■□□□□ 0.25
HMGCS1-205ENST00000508319 ATP2B4P23634 1241 aa16.62■□□□□ 0.25
HMGCS1-205ENST00000508319 PAXIP1Q6ZW49 1069 aaPredicted RBP16.62■□□□□ 0.25
HMGCS1-205ENST00000508319 FAM9BQ8IZU0 186 aa16.62■□□□□ 0.25
HMGCS1-205ENST00000508319 MYH16Q9H6N6 1097 aa16.62■□□□□ 0.25
HMGCS1-205ENST00000508319 MINPP1Q9UNW1 487 aa16.62■□□□□ 0.25
HMGCS1-205ENST00000508319 ECE1P42892 770 aa16.61■□□□□ 0.25
HMGCS1-205ENST00000508319 CTCFP49711 727 aaPredicted RBP16.61■□□□□ 0.25
HMGCS1-205ENST00000508319 FAM161AQ3B820 660 aa16.61■□□□□ 0.25
HMGCS1-205ENST00000508319 ZNF408Q9H9D4 720 aa16.61■□□□□ 0.25
HMGCS1-205ENST00000508319 PRDM10Q9NQV6 1147 aa16.61■□□□□ 0.25
HMGCS1-205ENST00000508319 G3V3G9 751 aa16.6■□□□□ 0.25
HMGCS1-205ENST00000508319 ITGA6P23229 1130 aa16.6■□□□□ 0.25
HMGCS1-205ENST00000508319 MAP2K1Q02750 393 aaPredicted RBP16.6■□□□□ 0.25
HMGCS1-205ENST00000508319 KIF4BQ2VIQ3 1234 aa16.6■□□□□ 0.25
HMGCS1-205ENST00000508319 DCAF8Q5TAQ9 597 aa16.6■□□□□ 0.25
HMGCS1-205ENST00000508319 DLK2Q6UY11 383 aa16.6■□□□□ 0.25
HMGCS1-205ENST00000508319 USP48Q86UV5 1035 aa16.6■□□□□ 0.25
HMGCS1-205ENST00000508319 HHIPL1Q96JK4 782 aa16.6■□□□□ 0.25
HMGCS1-205ENST00000508319 F6X3S4 739 aa16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 CSF1RP07333 972 aa16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 CCT4P50991 539 aaKnown RBP16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 ZNF280AP59817 542 aaPredicted RBP16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 GRM1Q13255 1194 aa16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 RSBN1LQ6PCB5 846 aaPredicted RBP16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 KRT26Q7Z3Y9 468 aa16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 AGBL3Q8NEM8 1001 aa16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 GMLQ99445 158 aa16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 ZNF521Q96K83 1311 aa16.59■□□□□ 0.25
HMGCS1-205ENST00000508319 ADM5C9JUS6 153 aa16.58■□□□□ 0.24
HMGCS1-205ENST00000508319 HSPA8P11142 646 aaKnown RBP16.58■□□□□ 0.24
HMGCS1-205ENST00000508319 IGHMBP2P38935 993 aaKnown RBP16.58■□□□□ 0.24
HMGCS1-205ENST00000508319 LBX1P52954 281 aa16.58■□□□□ 0.24
HMGCS1-205ENST00000508319 BEND3Q5T5X7 828 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms