RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SALL4Q9UJQ4 1053 aa6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 HOXD8P13378 290 aaPredicted RBP6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 EIF4BP23588 611 aaKnown RBP6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 NRLP54845 237 aa6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 TSNAXIP1Q2TAA8 658 aa6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 KIAA0319Q5VV43 1072 aa6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 GPR161Q8N6U8 529 aaKnown RBP6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 IGFLR1Q9H665 355 aa6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 NSFL1CQ9UNZ2 370 aaKnown RBP6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.7□□□□□ -1.34
HMGB1P28-201ENST00000507778 A0A1W2PP55 124 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 SIN3BO75182 1162 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 KIF4AO95239 1232 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 RECKO95980 971 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 PCBP4P57723 403 aaKnown RBP6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 GAS6Q14393 721 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 PCSK7Q16549 785 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 COL13A1Q5TAT6 717 aaPredicted RBP6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 TRPM4Q8TD43 1214 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 SLC16A10Q8TF71 515 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 SPACA7Q96KW9 195 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 NSUN5Q96P11 429 aaKnown RBP6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 UBE2OQ9C0C9 1292 aaKnown RBP6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 EHD4Q9H223 541 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 SUV39H2Q9H5I1 410 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 C12orf49Q9H741 205 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 AVENQ9NQS1 362 aaPredicted RBP6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 MBIPQ9NS73 344 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 PPP4R2Q9NY27 417 aa6.69□□□□□ -1.34
HMGB1P28-201ENST00000507778 LOC102724428A0A0B4J2F2 783 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 ZBTB42B2RXF5 422 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 TERTO14746 1132 aaKnown RBP6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 MAP2K3P46734 347 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 SIK1P57059 783 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 GPLD1P80108 840 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 TBC1D8BQ0IIM8 1120 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 PEAR1Q5VY43 1037 aaPredicted RBP6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 BCO2Q9BYV7 579 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 OSBPL7Q9BZF2 842 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 SRCIN1Q9C0H9 1055 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 LATS2Q9NRM7 1088 aa6.68□□□□□ -1.34
HMGB1P28-201ENST00000507778 VSIG8P0DPA2 414 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 ARAFP10398 606 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 ADH6P28332 368 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 MLLT1Q03111 559 aaPredicted RBP6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 GRM2Q14416 872 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 NXPE4Q6UWF7 544 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 CEP120Q8N960 986 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 TMEM87AQ8NBN3 555 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 OSMRQ99650 979 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 IGSF5Q9NSI5 407 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 DNAJB12Q9NXW2 375 aaKnown RBP6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 FAM8A1Q9UBU6 413 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 TRAK1Q9UPV9 953 aa6.67□□□□□ -1.34
HMGB1P28-201ENST00000507778 J3QW42 95 aa6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 TCF3P15923 654 aa6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 LDLRAD1Q5T700 205 aa6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 HFE2Q6ZVN8 426 aa6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 TNFRSF25Q93038 417 aa6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 COL25A1Q9BXS0 654 aaPredicted RBP6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 RBSNQ9H1K0 784 aa6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 LIN7BQ9HAP6 207 aa6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 KLF15Q9UIH9 416 aa6.66□□□□□ -1.34
HMGB1P28-201ENST00000507778 ADARB2-AS1A8MUL3 147 aa6.65□□□□□ -1.34
HMGB1P28-201ENST00000507778 SCAMP3O14828 347 aaKnown RBP6.65□□□□□ -1.34
HMGB1P28-201ENST00000507778 GHRHP01286 108 aa6.65□□□□□ -1.34
HMGB1P28-201ENST00000507778 NFX1Q12986 1120 aaKnown RBP6.65□□□□□ -1.34
HMGB1P28-201ENST00000507778 CRELD1Q96HD1 420 aa6.65□□□□□ -1.34
HMGB1P28-201ENST00000507778 ZKSCAN3Q9BRR0 538 aa6.65□□□□□ -1.34
HMGB1P28-201ENST00000507778 DZANK1Q9NVP4 752 aa6.65□□□□□ -1.34
HMGB1P28-201ENST00000507778 IGF1RP08069 1367 aa6.65□□□□□ -1.35
HMGB1P28-201ENST00000507778 NEURL1BA8MQ27 555 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 CTSHP09668 335 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 ACPPP15309 386 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 RNFT1Q5M7Z0 435 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 FAM35AQ86V20 835 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 CCNJLQ8IV13 435 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 GLIS3Q8NEA6 775 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 IRF7Q92985 503 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 CNTNAP3BQ96NU0 1288 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 PBX4Q9BYU1 374 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 CNTNAP3Q9BZ76 1288 aa6.64□□□□□ -1.35
HMGB1P28-201ENST00000507778 TMEM238LA0A1B0GVL6 79 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 NFKBIEO00221 500 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 TRPA1O75762 1119 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 USP17L7P0C7H9 530 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 XRCC5P13010 732 aaKnown RBP6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 CPB1P15086 417 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 EIF2AK2P19525 551 aaKnown RBP6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 ALAS2P22557 587 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 GSTT1P30711 240 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 ADH7P40394 386 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 INSM1Q01101 510 aaPredicted RBP6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 SRSF11Q05519 484 aaKnown RBP6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 ERBB4Q15303 1308 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 LCE2AQ5TA79 106 aaPredicted RBP6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 PRPF40BQ6NWY9 871 aaKnown RBP6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 MICALL1Q8N3F8 863 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 GOLGA6L1Q8N7Z2 621 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 TMEM102Q8N9M5 508 aaPredicted RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms