RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 PGAP2Q9UHJ9 254 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 MAP3K2Q9Y2U5 619 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 TLL2Q9Y6L7 1015 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 CACNA1FO60840 1977 aa14.87□□□□□ -0.03
HMGCS1-204ENST00000507293 RTL9Q8NET4 1388 aa14.86□□□□□ -0.03
HMGCS1-204ENST00000507293 ECE1P42892 770 aa14.86□□□□□ -0.03
HMGCS1-204ENST00000507293 GRM1Q13255 1194 aa14.86□□□□□ -0.03
HMGCS1-204ENST00000507293 ZC3H15Q8WU90 426 aaKnown RBP14.86□□□□□ -0.03
HMGCS1-204ENST00000507293 UFL1O94874 794 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 CELF2O95319 508 aaKnown RBP14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 LBX1P52954 281 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 MAP2K1Q02750 393 aaPredicted RBP14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 CCDC27Q2M243 656 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 KSR2Q6VAB6 950 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 WWC1Q8IX03 1113 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 DPF2Q92785 391 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 STK31Q9BXU1 1019 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 ZNF408Q9H9D4 720 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 KCNQ5Q9NR82 932 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 PODXL2Q9NZ53 605 aa14.85□□□□□ -0.03
HMGCS1-204ENST00000507293 PI4KAP2A4QPH2 592 aa14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 IGKV5-2P06315 115 aa14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 HSPA8P11142 646 aaKnown RBP14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 TWISTNBQ3B726 338 aaPredicted RBP14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 CDC37L1Q7L3B6 337 aa14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 SAMD7Q7Z3H4 446 aa14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 PI4KAP1Q8N8J0 262 aa14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 ZC3H12CQ9C0D7 883 aaKnown RBP14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 ANKIB1Q9P2G1 1089 aa14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 GGA1Q9UJY5 639 aa14.84□□□□□ -0.03
HMGCS1-204ENST00000507293 ZNF646O15015 1829 aaPredicted RBP14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 EGFRP00533 1210 aa14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 RPS12P25398 132 aaKnown RBP14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 CTSWP56202 376 aa14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 TBC1D10BQ4KMP7 808 aaPredicted RBP14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 G2E3Q7L622 706 aa14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 SAPCD2Q86UD0 394 aa14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 ANKRD18AQ8IVF6 992 aa14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 MRS2Q9HD23 443 aa14.83□□□□□ -0.04
HMGCS1-204ENST00000507293 G3V3G9 751 aa14.82□□□□□ -0.04
HMGCS1-204ENST00000507293 NEXNQ0ZGT2 675 aa14.82□□□□□ -0.04
HMGCS1-204ENST00000507293 CWF19L2Q2TBE0 894 aaKnown RBP14.82□□□□□ -0.04
HMGCS1-204ENST00000507293 RBM26Q5T8P6 1007 aaKnown RBP14.82□□□□□ -0.04
HMGCS1-204ENST00000507293 DCAF8Q5TAQ9 597 aa14.82□□□□□ -0.04
HMGCS1-204ENST00000507293 USP48Q86UV5 1035 aa14.82□□□□□ -0.04
HMGCS1-204ENST00000507293 IL16Q14005 1332 aa14.82□□□□□ -0.04
HMGCS1-204ENST00000507293 NEURL1BA8MQ27 555 aa14.81□□□□□ -0.04
HMGCS1-204ENST00000507293 AOC2O75106 756 aa14.81□□□□□ -0.04
HMGCS1-204ENST00000507293 DLK2Q6UY11 383 aa14.81□□□□□ -0.04
HMGCS1-204ENST00000507293 CDC5LQ99459 802 aaKnown RBP14.81□□□□□ -0.04
HMGCS1-204ENST00000507293 XDHP47989 1333 aa14.81□□□□□ -0.04
HMGCS1-204ENST00000507293 FANCIQ9NVI1 1328 aa14.81□□□□□ -0.04
HMGCS1-204ENST00000507293 SLC4A2P04920 1241 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 VIL1P09327 827 aaKnown RBP14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 ATP2B4P23634 1241 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 KIF4BQ2VIQ3 1234 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 TTLL11Q8NHH1 800 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 HHIPL1Q96JK4 782 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 BEGAINQ9BUH8 593 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 GREM2Q9H772 168 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 ZNF609O15014 1411 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 A0A1B0GUL6 1792 aa14.8□□□□□ -0.04
HMGCS1-204ENST00000507293 ADM5C9JUS6 153 aa14.79□□□□□ -0.04
HMGCS1-204ENST00000507293 MAP2K2P36507 400 aa14.79□□□□□ -0.04
HMGCS1-204ENST00000507293 UBE3BQ7Z3V4 1068 aa14.79□□□□□ -0.04
HMGCS1-204ENST00000507293 KRT26Q7Z3Y9 468 aa14.79□□□□□ -0.04
HMGCS1-204ENST00000507293 H7C1W4 665 aa14.78□□□□□ -0.04
HMGCS1-204ENST00000507293 ANP32CO43423 234 aa14.78□□□□□ -0.04
HMGCS1-204ENST00000507293 FLIIQ13045 1269 aa14.78□□□□□ -0.04
HMGCS1-204ENST00000507293 NCBP3Q53F19 620 aaKnown RBP14.78□□□□□ -0.04
HMGCS1-204ENST00000507293 RSBN1LQ6PCB5 846 aaPredicted RBP14.78□□□□□ -0.04
HMGCS1-204ENST00000507293 DCPSQ96C86 337 aaKnown RBP14.78□□□□□ -0.04
HMGCS1-204ENST00000507293 SALL2Q9Y467 1007 aaPredicted RBP14.78□□□□□ -0.04
HMGCS1-204ENST00000507293 MED23Q9ULK4 1368 aa14.77□□□□□ -0.04
HMGCS1-204ENST00000507293 ASTN2O75129 1339 aaPredicted RBP14.77□□□□□ -0.04
HMGCS1-204ENST00000507293 WTIPA6NIX2 430 aaPredicted RBP14.77□□□□□ -0.05
HMGCS1-204ENST00000507293 ZEB1P37275 1124 aaPredicted RBP14.77□□□□□ -0.05
HMGCS1-204ENST00000507293 FKBP5Q13451 457 aaPredicted RBP14.77□□□□□ -0.05
HMGCS1-204ENST00000507293 BSDC1Q9NW68 430 aaPredicted RBP14.77□□□□□ -0.05
HMGCS1-204ENST00000507293 GGA3Q9NZ52 723 aa14.77□□□□□ -0.05
HMGCS1-204ENST00000507293 TSKSQ9UJT2 592 aa14.77□□□□□ -0.05
HMGCS1-204ENST00000507293 HUNKP57058 714 aa14.76□□□□□ -0.05
HMGCS1-204ENST00000507293 ZNF280AP59817 542 aaPredicted RBP14.76□□□□□ -0.05
HMGCS1-204ENST00000507293 GCKRQ14397 625 aa14.76□□□□□ -0.05
HMGCS1-204ENST00000507293 AGBL3Q8NEM8 1001 aa14.76□□□□□ -0.05
HMGCS1-204ENST00000507293 DNAAF4Q8WXU2 420 aa14.76□□□□□ -0.05
HMGCS1-204ENST00000507293 MINPP1Q9UNW1 487 aa14.76□□□□□ -0.05
HMGCS1-204ENST00000507293 CASP8AP2Q9UKL3 1982 aa14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 USP17L3A6NCW0 530 aa14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 USP17L4A6NCW7 530 aa14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 ZNF316A6NFI3 1004 aaPredicted RBP14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 VAMP4O75379 141 aa14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 IGHMBP2P38935 993 aaKnown RBP14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 CCT4P50991 539 aaKnown RBP14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 BRPF1P55201 1214 aaPredicted RBP14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 CASP7P55210 303 aa14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 EXOSC9Q06265 439 aaKnown RBP14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 FAM161AQ3B820 660 aa14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 USP17L1Q7RTZ2 530 aa14.75□□□□□ -0.05
HMGCS1-204ENST00000507293 WDR63Q8IWG1 891 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms