RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 CC2D2BQ6DHV5 1058 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 SP8Q8IXZ3 490 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 RTKN2Q8IZC4 609 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 MPNDQ8N594 471 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 RTL9Q8NET4 1388 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 NSFL1CQ9UNZ2 370 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 PA2G4Q9UQ80 394 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 ATP6V0A2Q9Y487 856 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 MYH3P11055 1940 aa10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 COL11A2P13942 1736 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 SURF6O75683 361 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 KCNJ4P48050 445 aa10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 PTPN12Q05209 780 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 MTX1Q13505 466 aa10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 GRIPAP1Q4V328 841 aa10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 METTL24Q5JXM2 366 aa10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 OLFM4Q6UX06 510 aa10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 DPP8Q6V1X1 898 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 PUS3Q9BZE2 481 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 ANKRD2Q9GZV1 360 aa10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 MINPP1Q9UNW1 487 aa10.19□□□□□ -0.78
LIMCH1-206ENST00000505705 G3V3G9 751 aa10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 C6orf229H3BNL8 230 aa10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 EYA2O00167 538 aa10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 YBX3P16989 372 aaKnown RBP eCLIP10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 RFX5P48382 616 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 CHRNDQ07001 517 aa10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 LRRC24Q50LG9 513 aa10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 DCAF8Q5TAQ9 597 aa10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 SSH3Q8TE77 659 aa10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 BCL11AQ9H165 835 aa10.18□□□□□ -0.78
LIMCH1-206ENST00000505705 CACNA1SQ13698 1873 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 MROH5Q6ZUA9 1318 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 APBB1O00213 710 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 TAF5LO75529 589 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 ATP2B4P23634 1241 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 IL15P40933 162 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 GPSM2P81274 684 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 HSP90AB4PQ58FF6 505 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 SUPT20HQ8NEM7 779 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 HELBQ8NG08 1087 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 C7orf43Q8WVR3 580 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 EYA3Q99504 573 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 TAOK3Q9H2K8 898 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 RWDD1Q9H446 243 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 COPRSQ9NQ92 184 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 CEP126Q9P2H0 1117 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 ZBTB47Q9UFB7 747 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 GGA1Q9UJY5 639 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 FBXO3Q9UK99 471 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 PCDHB15Q9Y5E8 787 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 SLX4Q8IY92 1834 aa10.17□□□□□ -0.78
LIMCH1-206ENST00000505705 DLEC1Q9Y238 1755 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 KIAA1551Q9HCM1 1747 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 XDHP47989 1333 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 CIAO1O76071 339 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 UFL1O94874 794 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 ATXN8OSP0DMR3 200 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 FKBP4Q02790 459 aaKnown RBP eCLIP10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 EXOC6BQ9Y2D4 811 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 RIPOR2Q9Y4F9 1068 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 TAF1P21675 1872 aa10.16□□□□□ -0.78
LIMCH1-206ENST00000505705 RIMBP2O15034 1052 aa10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 RASSF7Q02833 373 aa10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 WASHC4Q2M389 1173 aa10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 SLC51AQ86UW1 340 aa10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 ERC1Q8IUD2 1116 aa10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 SIRT2Q8IXJ6 389 aa10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 ZC3H12CQ9C0D7 883 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 ZNF277Q9NRM2 450 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 LEMD3Q9Y2U8 911 aa10.15□□□□□ -0.78
LIMCH1-206ENST00000505705 ZNF804BA4D1E1 1349 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 PPIP5K2O43314 1243 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 PDE8BO95263 885 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 TFCP2Q12800 502 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 ATG9AQ7Z3C6 839 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 LARGE2Q8N3Y3 721 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 TBC1D16Q8TBP0 767 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 NEUROD6Q96NK8 337 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 PSMD1Q99460 953 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 PODXL2Q9NZ53 605 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 POLLQ9UGP5 575 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 AKAP2Q9Y2D5 859 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 SPEF2Q9C093 1822 aa10.14□□□□□ -0.79
LIMCH1-206ENST00000505705 BRCA1P38398 1863 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 COL4A1P02462 1669 aa10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 RAB11FIP3O75154 756 aa10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 IFIT1P09914 478 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 SLC5A1P13866 664 aa10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 UBE4AQ14139 1066 aa10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 PUM3Q15397 648 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 AOC3Q16853 763 aa10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 CAVIN4Q5BKX8 364 aa10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 VPS37DQ86XT2 251 aa10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 JDP2Q8WYK2 163 aa10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 GPR101Q96P66 508 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 NOP58Q9Y2X3 529 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-206ENST00000505705 SNAP23O00161 211 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 NFKBIEO00221 500 aa10.12□□□□□ -0.79
LIMCH1-206ENST00000505705 FRAT2O75474 233 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms