RNA–Protein interactions for RNA: ENST00000504841.6

NPIPB3-203, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

APPRIS P1 TSL 1 (best)

Gene NPIPB3, Length 1,254 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-203ENST00000504841 RTL5Q5HYW3 569 aaPredicted RBP9.05□□□□□ -0.96
NPIPB3-203ENST00000504841 PCDH10Q9P2E7 1040 aa9.05□□□□□ -0.96
NPIPB3-203ENST00000504841 LRRC37AA6NMS7 1700 aa9.05□□□□□ -0.96
NPIPB3-203ENST00000504841 ASTN2O75129 1339 aaPredicted RBP9.05□□□□□ -0.96
NPIPB3-203ENST00000504841 GPSM2P81274 684 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 TCIRG1Q13488 830 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 KIF4BQ2VIQ3 1234 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 SULF1Q8IWU6 871 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 CELF1Q92879 486 aaKnown RBP9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 CCDC102AQ96A19 550 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 KCNQ5Q9NR82 932 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 RNF186Q9NXI6 227 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 SAGE1Q9NXZ1 904 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 COL4A1P02462 1669 aa9.04□□□□□ -0.96
NPIPB3-203ENST00000504841 RTL9Q8NET4 1388 aa9.03□□□□□ -0.96
NPIPB3-203ENST00000504841 G3V3G9 751 aa9.03□□□□□ -0.96
NPIPB3-203ENST00000504841 KRT24Q2M2I5 525 aa9.03□□□□□ -0.96
NPIPB3-203ENST00000504841 DCAF8Q5TAQ9 597 aa9.03□□□□□ -0.96
NPIPB3-203ENST00000504841 TMC4Q7Z404 712 aa9.03□□□□□ -0.96
NPIPB3-203ENST00000504841 DPF2Q92785 391 aa9.03□□□□□ -0.96
NPIPB3-203ENST00000504841 CDCA5Q96FF9 252 aa9.03□□□□□ -0.96
NPIPB3-203ENST00000504841 FAM89AQ96GI7 184 aa9.03□□□□□ -0.96
NPIPB3-203ENST00000504841 DDX60Q8IY21 1712 aaKnown RBP9.02□□□□□ -0.96
NPIPB3-203ENST00000504841 ATP5J2-PTCD1G3V325 749 aa9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 SLC10A3P09131 477 aa9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 RPS12P25398 132 aaKnown RBP9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 RIPK4P57078 832 aa9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 ANGEL2Q5VTE6 544 aaKnown RBP9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 CTU1Q7Z7A3 348 aaKnown RBP9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 CSRNP1Q96S65 589 aa9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 EYA3Q99504 573 aa9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 PNNQ9H307 717 aaKnown RBP9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 CHPF2Q9P2E5 772 aa9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 POLLQ9UGP5 575 aa9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 LAS1LQ9Y4W2 734 aaKnown RBP9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 POLR2AP24928 1970 aaKnown RBP9.02□□□□□ -0.97
NPIPB3-203ENST00000504841 AKAP11Q9UKA4 1901 aa9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 UFL1O94874 794 aa9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 PRPF38BQ5VTL8 546 aaKnown RBP9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 PDE4DIPQ5VU43 2346 aa9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 RASAL3Q86YV0 1011 aa9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 TBC1D16Q8TBP0 767 aa9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 ZC3H12CQ9C0D7 883 aaKnown RBP9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 HDAC9Q9UKV0 1011 aa9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 SCAF8Q9UPN6 1271 aaKnown RBP9.01□□□□□ -0.97
NPIPB3-203ENST00000504841 IRS4O14654 1257 aaPredicted RBP9□□□□□ -0.97
NPIPB3-203ENST00000504841 LMOD3Q0VAK6 560 aa9□□□□□ -0.97
NPIPB3-203ENST00000504841 SF3B3Q15393 1217 aaKnown RBP9□□□□□ -0.97
NPIPB3-203ENST00000504841 NEUROD2Q15784 382 aa9□□□□□ -0.97
NPIPB3-203ENST00000504841 HDGFL1Q5TGJ6 251 aa9□□□□□ -0.97
NPIPB3-203ENST00000504841 MOB2Q70IA6 237 aa9□□□□□ -0.97
NPIPB3-203ENST00000504841 PLBD2Q8NHP8 589 aa9□□□□□ -0.97
NPIPB3-203ENST00000504841 CCDC85AQ96PX6 553 aaPredicted RBP9□□□□□ -0.97
NPIPB3-203ENST00000504841 ANKIB1Q9P2G1 1089 aa9□□□□□ -0.97
NPIPB3-203ENST00000504841 HPS5Q9UPZ3 1129 aa9□□□□□ -0.97
NPIPB3-203ENST00000504841 SCN9AQ15858 1988 aa9□□□□□ -0.97
NPIPB3-203ENST00000504841 SPDYE4A6NLX3 237 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 TBC1D8O95759 1140 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 TMPOP42166 694 aaKnown RBP8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 MKRN3Q13064 507 aaKnown RBP8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 SCARF1Q14162 830 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 TTLL12Q14166 644 aaPredicted RBP8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 PRAMEF18Q5VWM3 479 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 CCDC146Q8IYE0 955 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 ISCA1Q9BUE6 129 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 SEC31BQ9NQW1 1179 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 SSUH2Q9Y2M2 353 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 PAPPA2Q9BXP8 1791 aa8.99□□□□□ -0.97
NPIPB3-203ENST00000504841 UBE2Q2LH0YL09 131 aa8.98□□□□□ -0.97
NPIPB3-203ENST00000504841 VIL1P09327 827 aaKnown RBP8.98□□□□□ -0.97
NPIPB3-203ENST00000504841 RPS8P62241 208 aaKnown RBP8.98□□□□□ -0.97
NPIPB3-203ENST00000504841 RSBN1LQ6PCB5 846 aaPredicted RBP8.98□□□□□ -0.97
NPIPB3-203ENST00000504841 ANKRD13DQ6ZTN6 518 aa8.98□□□□□ -0.97
NPIPB3-203ENST00000504841 ZNF296Q8WUU4 475 aaPredicted RBP8.98□□□□□ -0.97
NPIPB3-203ENST00000504841 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.98□□□□□ -0.97
NPIPB3-203ENST00000504841 GGA1Q9UJY5 639 aa8.98□□□□□ -0.97
NPIPB3-203ENST00000504841 USP17L8P0C7I0 530 aa8.97□□□□□ -0.97
NPIPB3-203ENST00000504841 JARID2Q92833 1246 aaPredicted RBP8.97□□□□□ -0.97
NPIPB3-203ENST00000504841 FBXW7Q969H0 707 aa8.97□□□□□ -0.97
NPIPB3-203ENST00000504841 MYOZ2Q9NPC6 264 aa8.97□□□□□ -0.97
NPIPB3-203ENST00000504841 BABAM1Q9NWV8 329 aa8.97□□□□□ -0.97
NPIPB3-203ENST00000504841 ZNF280AP59817 542 aaPredicted RBP8.96□□□□□ -0.98
NPIPB3-203ENST00000504841 FKBP1BP68106 108 aa8.96□□□□□ -0.98
NPIPB3-203ENST00000504841 GOLGA2Q08379 1002 aa8.96□□□□□ -0.98
NPIPB3-203ENST00000504841 PRKG1Q13976 671 aa8.96□□□□□ -0.98
NPIPB3-203ENST00000504841 RIC3Q7Z5B4 369 aa8.96□□□□□ -0.98
NPIPB3-203ENST00000504841 REM2Q8IYK8 340 aaPredicted RBP8.96□□□□□ -0.98
NPIPB3-203ENST00000504841 AGBL3Q8NEM8 1001 aa8.96□□□□□ -0.98
NPIPB3-203ENST00000504841 DBF4Q9UBU7 674 aaPredicted RBP8.96□□□□□ -0.98
NPIPB3-203ENST00000504841 USP17L3A6NCW0 530 aa8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 USP17L4A6NCW7 530 aa8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 GPR25O00155 361 aa8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 CHL1O00533 1208 aa8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 NF2P35240 595 aa8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 PKN2Q16513 984 aaKnown RBP8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 CCDC152Q4G0S7 254 aa8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 DUSP27Q5VZP5 1158 aa8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 USP17L1Q7RTZ2 530 aa8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 ZBTB38Q8NAP3 1195 aaPredicted RBP8.95□□□□□ -0.98
NPIPB3-203ENST00000504841 MYD88Q99836 296 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms