RNA–Protein interactions for RNA: ENST00000503628.5

DDR1-250, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-250ENST00000503628 SF3B3Q15393 1217 aaKnown RBP20.64■□□□□ 0.89
DDR1-250ENST00000503628 FAM89AQ96GI7 184 aa20.64■□□□□ 0.89
DDR1-250ENST00000503628 EYA3Q99504 573 aa20.64■□□□□ 0.89
DDR1-250ENST00000503628 BABAM1Q9NWV8 329 aa20.64■□□□□ 0.89
DDR1-250ENST00000503628 GGA3Q9NZ52 723 aa20.64■□□□□ 0.89
DDR1-250ENST00000503628 COL4A1P02462 1669 aa20.64■□□□□ 0.89
DDR1-250ENST00000503628 VIL1P09327 827 aaKnown RBP20.63■□□□□ 0.89
DDR1-250ENST00000503628 RALBP1Q15311 655 aa20.63■□□□□ 0.89
DDR1-250ENST00000503628 CDCA5Q96FF9 252 aa20.63■□□□□ 0.89
DDR1-250ENST00000503628 SCN9AQ15858 1988 aa20.63■□□□□ 0.89
DDR1-250ENST00000503628 PRPF38BQ5VTL8 546 aaKnown RBP20.62■□□□□ 0.89
DDR1-250ENST00000503628 TBC1D16Q8TBP0 767 aa20.62■□□□□ 0.89
DDR1-250ENST00000503628 KRT24Q2M2I5 525 aa20.61■□□□□ 0.89
DDR1-250ENST00000503628 RTL5Q5HYW3 569 aaPredicted RBP20.61■□□□□ 0.89
DDR1-250ENST00000503628 ATP5J2-PTCD1G3V325 749 aa20.6■□□□□ 0.89
DDR1-250ENST00000503628 RPS8P62241 208 aaKnown RBP20.6■□□□□ 0.89
DDR1-250ENST00000503628 RASAL3Q86YV0 1011 aa20.6■□□□□ 0.89
DDR1-250ENST00000503628 REM2Q8IYK8 340 aaPredicted RBP20.6■□□□□ 0.89
DDR1-250ENST00000503628 PLBD2Q8NHP8 589 aa20.6■□□□□ 0.89
DDR1-250ENST00000503628 ISCA1Q9BUE6 129 aa20.6■□□□□ 0.89
DDR1-250ENST00000503628 ZC3H12CQ9C0D7 883 aaKnown RBP20.6■□□□□ 0.89
DDR1-250ENST00000503628 CHPF2Q9P2E5 772 aa20.6■□□□□ 0.89
DDR1-250ENST00000503628 HPS5Q9UPZ3 1129 aa20.6■□□□□ 0.89
DDR1-250ENST00000503628 SCARF1Q14162 830 aa20.59■□□□□ 0.89
DDR1-250ENST00000503628 ANGEL2Q5VTE6 544 aaKnown RBP20.59■□□□□ 0.89
DDR1-250ENST00000503628 ANKRD13DQ6ZTN6 518 aa20.59■□□□□ 0.89
DDR1-250ENST00000503628 G3V3G9 751 aa20.58■□□□□ 0.89
DDR1-250ENST00000503628 DCAF8Q5TAQ9 597 aa20.58■□□□□ 0.89
DDR1-250ENST00000503628 TMPOP42166 694 aaKnown RBP20.57■□□□□ 0.88
DDR1-250ENST00000503628 ZNF280AP59817 542 aaPredicted RBP20.57■□□□□ 0.88
DDR1-250ENST00000503628 IRS4O14654 1257 aaPredicted RBP20.56■□□□□ 0.88
DDR1-250ENST00000503628 TBC1D8O95759 1140 aa20.56■□□□□ 0.88
DDR1-250ENST00000503628 MOB2Q70IA6 237 aa20.56■□□□□ 0.88
DDR1-250ENST00000503628 PRKRIP1Q9H875 184 aaPredicted RBP20.56■□□□□ 0.88
DDR1-250ENST00000503628 PODXL2Q9NZ53 605 aa20.56■□□□□ 0.88
DDR1-250ENST00000503628 HDAC9Q9UKV0 1011 aa20.56■□□□□ 0.88
DDR1-250ENST00000503628 MYBBP1AQ9BQG0 1328 aaKnown RBP20.55■□□□□ 0.88
DDR1-250ENST00000503628 UFL1O94874 794 aa20.55■□□□□ 0.88
DDR1-250ENST00000503628 FKBP1BP68106 108 aa20.55■□□□□ 0.88
DDR1-250ENST00000503628 LMOD3Q0VAK6 560 aa20.55■□□□□ 0.88
DDR1-250ENST00000503628 PKN2Q16513 984 aaKnown RBP20.55■□□□□ 0.88
DDR1-250ENST00000503628 RSBN1LQ6PCB5 846 aaPredicted RBP20.55■□□□□ 0.88
DDR1-250ENST00000503628 AGBL3Q8NEM8 1001 aa20.55■□□□□ 0.88
DDR1-250ENST00000503628 ANKIB1Q9P2G1 1089 aa20.55■□□□□ 0.88
DDR1-250ENST00000503628 SCAF8Q9UPN6 1271 aaKnown RBP20.55■□□□□ 0.88
DDR1-250ENST00000503628 CHL1O00533 1208 aa20.54■□□□□ 0.88
DDR1-250ENST00000503628 HDGFL1Q5TGJ6 251 aa20.54■□□□□ 0.88
DDR1-250ENST00000503628 ZNF296Q8WUU4 475 aaPredicted RBP20.54■□□□□ 0.88
DDR1-250ENST00000503628 SEC31BQ9NQW1 1179 aa20.54■□□□□ 0.88
DDR1-250ENST00000503628 LAS1LQ9Y4W2 734 aaKnown RBP20.54■□□□□ 0.88
DDR1-250ENST00000503628 PAPPA2Q9BXP8 1791 aa20.54■□□□□ 0.88
DDR1-250ENST00000503628 UBE2Q2LH0YL09 131 aa20.53■□□□□ 0.88
DDR1-250ENST00000503628 GMLQ99445 158 aa20.53■□□□□ 0.88
DDR1-250ENST00000503628 MYOZ2Q9NPC6 264 aa20.53■□□□□ 0.88
DDR1-250ENST00000503628 GGA1Q9UJY5 639 aa20.53■□□□□ 0.88
DDR1-250ENST00000503628 TRIM28Q13263 835 aaKnown RBP20.52■□□□□ 0.88
DDR1-250ENST00000503628 NEUROD2Q15784 382 aa20.52■□□□□ 0.88
DDR1-250ENST00000503628 PRAMEF18Q5VWM3 479 aa20.52■□□□□ 0.88
DDR1-250ENST00000503628 DBF4Q9UBU7 674 aaPredicted RBP20.52■□□□□ 0.88
DDR1-250ENST00000503628 PSME4Q14997 1843 aa20.52■□□□□ 0.88
DDR1-250ENST00000503628 USP17L8P0C7I0 530 aa20.51■□□□□ 0.87
DDR1-250ENST00000503628 ZNF609O15014 1411 aa20.51■□□□□ 0.87
DDR1-250ENST00000503628 PITPNM2Q9BZ72 1349 aa20.51■□□□□ 0.87
DDR1-250ENST00000503628 GPR25O00155 361 aa20.49■□□□□ 0.87
DDR1-250ENST00000503628 TM4SF4P48230 202 aa20.49■□□□□ 0.87
DDR1-250ENST00000503628 ZBTB38Q8NAP3 1195 aaPredicted RBP20.49■□□□□ 0.87
DDR1-250ENST00000503628 HYPKQ9NX55 129 aa20.49■□□□□ 0.87
DDR1-250ENST00000503628 USP17L3A6NCW0 530 aa20.48■□□□□ 0.87
DDR1-250ENST00000503628 USP17L4A6NCW7 530 aa20.48■□□□□ 0.87
DDR1-250ENST00000503628 HOXB7P09629 217 aa20.48■□□□□ 0.87
DDR1-250ENST00000503628 USP17L1Q7RTZ2 530 aa20.48■□□□□ 0.87
DDR1-250ENST00000503628 MKRN3Q13064 507 aaKnown RBP20.47■□□□□ 0.87
DDR1-250ENST00000503628 TTLL12Q14166 644 aaPredicted RBP20.47■□□□□ 0.87
DDR1-250ENST00000503628 NBPF9Q3BBW0 867 aa20.47■□□□□ 0.87
DDR1-250ENST00000503628 FBXO46Q6PJ61 603 aaPredicted RBP20.47■□□□□ 0.87
DDR1-250ENST00000503628 RIC3Q7Z5B4 369 aa20.47■□□□□ 0.87
DDR1-250ENST00000503628 CCDC146Q8IYE0 955 aa20.47■□□□□ 0.87
DDR1-250ENST00000503628 CCDC85AQ96PX6 553 aaPredicted RBP20.47■□□□□ 0.87
DDR1-250ENST00000503628 TRIM35Q9UPQ4 493 aa20.47■□□□□ 0.87
DDR1-250ENST00000503628 ANP32CO43423 234 aa20.46■□□□□ 0.87
DDR1-250ENST00000503628 HSP90B1P14625 803 aaKnown RBP20.46■□□□□ 0.87
DDR1-250ENST00000503628 CCDC152Q4G0S7 254 aa20.46■□□□□ 0.87
DDR1-250ENST00000503628 NOM1Q5C9Z4 860 aaKnown RBP20.46■□□□□ 0.87
DDR1-250ENST00000503628 PODNQ7Z5L7 613 aa20.46■□□□□ 0.87
DDR1-250ENST00000503628 JARID2Q92833 1246 aaPredicted RBP20.46■□□□□ 0.87
DDR1-250ENST00000503628 WTIPA6NIX2 430 aaPredicted RBP20.45■□□□□ 0.86
DDR1-250ENST00000503628 DUSP27Q5VZP5 1158 aa20.45■□□□□ 0.86
DDR1-250ENST00000503628 R3HDMLQ9H3Y0 253 aa20.45■□□□□ 0.86
DDR1-250ENST00000503628 XDHP47989 1333 aa20.45■□□□□ 0.86
DDR1-250ENST00000503628 PDE8AO60658 829 aa20.44■□□□□ 0.86
DDR1-250ENST00000503628 ATP2B4P23634 1241 aa20.44■□□□□ 0.86
DDR1-250ENST00000503628 MYD88Q99836 296 aa20.44■□□□□ 0.86
DDR1-250ENST00000503628 MXD3Q9BW11 206 aa20.44■□□□□ 0.86
DDR1-250ENST00000503628 FKTNO75072 461 aa20.43■□□□□ 0.86
DDR1-250ENST00000503628 ANKRD18AQ8IVF6 992 aa20.43■□□□□ 0.86
DDR1-250ENST00000503628 PHAXQ9H814 394 aaKnown RBP20.43■□□□□ 0.86
DDR1-250ENST00000503628 WNT10BO00744 389 aa20.42■□□□□ 0.86
DDR1-250ENST00000503628 PCCAP05165 728 aaPredicted RBP20.42■□□□□ 0.86
DDR1-250ENST00000503628 NF2P35240 595 aa20.42■□□□□ 0.86
DDR1-250ENST00000503628 PTPN12Q05209 780 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms