RNA–Protein interactions for RNA: ENST00000503547.1

NR1I3-218, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 535 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-218	ENST00000503547	DLK2	Q6UY11	383 aa		11.56	□□□□□ -0.56
NR1I3-218	ENST00000503547	C2orf69	Q8N8R5	385 aa		11.56	□□□□□ -0.56
NR1I3-218	ENST00000503547	RUNDC1	Q96C34	613 aa		11.56	□□□□□ -0.56
NR1I3-218	ENST00000503547	ISCA1	Q9BUE6	129 aa		11.56	□□□□□ -0.56
NR1I3-218	ENST00000503547	HYPK	Q9NX55	129 aa		11.56	□□□□□ -0.56
NR1I3-218	ENST00000503547	POLL	Q9UGP5	575 aa		11.56	□□□□□ -0.56
NR1I3-218	ENST00000503547	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.56	□□□□□ -0.56
NR1I3-218	ENST00000503547	TNRC18	O15417	2968 aa	Predicted RBP	11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	EGFR	P00533	1210 aa		11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	HOXB7	P09629	217 aa		11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	RPS12	P25398	132 aa	Known RBP	11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	GOLGA2	Q08379	1002 aa		11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	SF3B3	Q15393	1217 aa	Known RBP	11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	KIF4B	Q2VIQ3	1234 aa		11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	RIC3	Q7Z5B4	369 aa		11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	SULF1	Q8IWU6	871 aa		11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	GBA2	Q9HCG7	927 aa	Predicted RBP	11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	ANKIB1	Q9P2G1	1089 aa		11.55	□□□□□ -0.56
NR1I3-218	ENST00000503547	UFL1	O94874	794 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	ZNF157	P51786	506 aa	Predicted RBP	11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	RPS8	P62241	208 aa	Known RBP	11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	DUSP27	Q5VZP5	1158 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	RGMB	Q6NW40	437 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	TBC1D16	Q8TBP0	767 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	ZIC5	Q96T25	663 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	KCNQ5	Q9NR82	932 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	GGA3	Q9NZ52	723 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	TRIM35	Q9UPQ4	493 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	RTL9	Q8NET4	1388 aa		11.54	□□□□□ -0.56
NR1I3-218	ENST00000503547	HSP90B1	P14625	803 aa	Known RBP	11.53	□□□□□ -0.56
NR1I3-218	ENST00000503547	CCDC102A	Q96A19	550 aa		11.53	□□□□□ -0.56
NR1I3-218	ENST00000503547	GGA1	Q9UJY5	639 aa		11.53	□□□□□ -0.56
NR1I3-218	ENST00000503547	PAPPA2	Q9BXP8	1791 aa		11.52	□□□□□ -0.57
NR1I3-218	ENST00000503547	DDX10	Q13206	875 aa	Known RBP	11.52	□□□□□ -0.57
NR1I3-218	ENST00000503547	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.52	□□□□□ -0.57
NR1I3-218	ENST00000503547	MYD88	Q99836	296 aa		11.52	□□□□□ -0.57
NR1I3-218	ENST00000503547	SEC31B	Q9NQW1	1179 aa		11.52	□□□□□ -0.57
NR1I3-218	ENST00000503547	MBIP	Q9NS73	344 aa		11.52	□□□□□ -0.57
NR1I3-218	ENST00000503547	FAM155A	B1AL88	458 aa	Predicted RBP	11.51	□□□□□ -0.57
NR1I3-218	ENST00000503547	TRPA1	O75762	1119 aa		11.51	□□□□□ -0.57
NR1I3-218	ENST00000503547	RGS19	P49795	217 aa		11.51	□□□□□ -0.57
NR1I3-218	ENST00000503547	KIF23	Q02241	960 aa	Predicted RBP	11.51	□□□□□ -0.57
NR1I3-218	ENST00000503547	CCDC152	Q4G0S7	254 aa		11.51	□□□□□ -0.57
NR1I3-218	ENST00000503547	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.51	□□□□□ -0.57
NR1I3-218	ENST00000503547	ADAMTS8	Q9UP79	889 aa		11.51	□□□□□ -0.57
NR1I3-218	ENST00000503547	ELL2	O00472	640 aa	Predicted RBP	11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	SLC34A2	O95436	690 aa		11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	VIL1	P09327	827 aa	Known RBP	11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	TRIM28	Q13263	835 aa	Known RBP	11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	ANGEL2	Q5VTE6	544 aa	Known RBP	11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	JARID2	Q92833	1246 aa	Predicted RBP	11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	CDCA5	Q96FF9	252 aa		11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	PHAX	Q9H814	394 aa	Known RBP	11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	CWC25	Q9NXE8	425 aa	Predicted RBP	11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	SAGE1	Q9NXZ1	904 aa		11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	PODXL2	Q9NZ53	605 aa		11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	ASTN2	O75129	1339 aa	Predicted RBP	11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	CACNA1F	O60840	1977 aa		11.5	□□□□□ -0.57
NR1I3-218	ENST00000503547	ZNF646	O15015	1829 aa	Predicted RBP	11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	PDE8A	O60658	829 aa		11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	SLC10A3	P09131	477 aa		11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	SCARF1	Q14162	830 aa		11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	ANKRD18A	Q8IVF6	992 aa		11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	CCDC191	Q8NCU4	936 aa		11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	FBXW7	Q969H0	707 aa		11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	RNF186	Q9NXI6	227 aa		11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	XDH	P47989	1333 aa		11.49	□□□□□ -0.57
NR1I3-218	ENST00000503547	DDX58	O95786	925 aa	Known RBP	11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	PCCA	P05165	728 aa	Predicted RBP	11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	USP17L8	P0C7I0	530 aa		11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	SOX10	P56693	466 aa		11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	GNAI1	P63096	354 aa		11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	CALD1	Q05682	793 aa	Known RBP	11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	AGBL3	Q8NEM8	1001 aa		11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	IFT57	Q9NWB7	429 aa		11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	ECM29	Q5VYK3	1845 aa		11.48	□□□□□ -0.57
NR1I3-218	ENST00000503547	ZNF609	O15014	1411 aa		11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	USP17L3	A6NCW0	530 aa		11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	USP17L4	A6NCW7	530 aa		11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	ZNF280A	P59817	542 aa	Predicted RBP	11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	TTLL12	Q14166	644 aa	Predicted RBP	11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	USP17L1	Q7RTZ2	530 aa		11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	RASAL3	Q86YV0	1011 aa		11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	CDC5L	Q99459	802 aa	Known RBP	11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	MYOZ2	Q9NPC6	264 aa		11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	SCAF8	Q9UPN6	1271 aa	Known RBP	11.47	□□□□□ -0.57
NR1I3-218	ENST00000503547	APAF1	O14727	1248 aa		11.46	□□□□□ -0.57
NR1I3-218	ENST00000503547	ATP2B4	P23634	1241 aa		11.46	□□□□□ -0.57
NR1I3-218	ENST00000503547	CTSW	P56202	376 aa		11.46	□□□□□ -0.57
NR1I3-218	ENST00000503547	CCDC30	Q5VVM6	783 aa		11.46	□□□□□ -0.57
NR1I3-218	ENST00000503547	CSRNP1	Q96S65	589 aa		11.46	□□□□□ -0.57
NR1I3-218	ENST00000503547	METTL22	Q9BUU2	404 aa	Predicted RBP	11.46	□□□□□ -0.57
NR1I3-218	ENST00000503547	PITPNM2	Q9BZ72	1349 aa		11.45	□□□□□ -0.58
NR1I3-218	ENST00000503547	ZNF853	P0CG23	659 aa		11.45	□□□□□ -0.58
NR1I3-218	ENST00000503547	FKBP1B	P68106	108 aa		11.45	□□□□□ -0.58
NR1I3-218	ENST00000503547	PODN	Q7Z5L7	613 aa		11.45	□□□□□ -0.58
NR1I3-218	ENST00000503547	CTU1	Q7Z7A3	348 aa	Known RBP	11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms