RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 C16orf46Q6P387 395 aa8.71□□□□□ -1.02
SMC4-227ENST00000497984 CAPN12Q6ZSI9 719 aa8.71□□□□□ -1.02
SMC4-227ENST00000497984 COL26A1Q96A83 441 aa8.71□□□□□ -1.02
SMC4-227ENST00000497984 MEGF10Q96KG7 1140 aa8.71□□□□□ -1.02
SMC4-227ENST00000497984 NSUN5Q96P11 429 aaKnown RBP8.7□□□□□ -1.02
SMC4-227ENST00000497984 BRD2P25440 801 aaKnown RBP8.69□□□□□ -1.02
SMC4-227ENST00000497984 NLRP13Q86W25 1043 aa8.69□□□□□ -1.02
SMC4-227ENST00000497984 CXXC1Q9P0U4 656 aaPredicted RBP8.69□□□□□ -1.02
SMC4-227ENST00000497984 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.68□□□□□ -1.02
SMC4-227ENST00000497984 GHRHP01286 108 aa8.68□□□□□ -1.02
SMC4-227ENST00000497984 ATG7O95352 703 aa8.67□□□□□ -1.02
SMC4-227ENST00000497984 LRP8Q14114 963 aa8.67□□□□□ -1.02
SMC4-227ENST00000497984 GDF6Q6KF10 455 aaPredicted RBP8.67□□□□□ -1.02
SMC4-227ENST00000497984 MKNK1Q9BUB5 465 aa8.67□□□□□ -1.02
SMC4-227ENST00000497984 SETDB1Q15047 1291 aa8.66□□□□□ -1.02
SMC4-227ENST00000497984 TMEM164Q5U3C3 297 aa8.66□□□□□ -1.02
SMC4-227ENST00000497984 DZIP1LQ8IYY4 767 aaKnown RBP8.66□□□□□ -1.02
SMC4-227ENST00000497984 IL22RA1Q8N6P7 574 aa8.66□□□□□ -1.02
SMC4-227ENST00000497984 OR13H1Q8NG92 308 aa8.66□□□□□ -1.02
SMC4-227ENST00000497984 TRIM33Q9UPN9 1127 aa8.66□□□□□ -1.02
SMC4-227ENST00000497984 COL13A1Q5TAT6 717 aaPredicted RBP8.65□□□□□ -1.02
SMC4-227ENST00000497984 TMEM130Q8N3G9 435 aa8.65□□□□□ -1.02
SMC4-227ENST00000497984 MRPL18Q9H0U6 180 aaKnown RBP8.65□□□□□ -1.02
SMC4-227ENST00000497984 AKTIPQ9H8T0 292 aa8.65□□□□□ -1.02
SMC4-227ENST00000497984 SRA1Q9HD15 236 aaKnown RBP8.65□□□□□ -1.02
SMC4-227ENST00000497984 HYAL3O43820 417 aaPredicted RBP8.64□□□□□ -1.03
SMC4-227ENST00000497984 ALX3O95076 343 aa8.64□□□□□ -1.03
SMC4-227ENST00000497984 NAA30Q147X3 362 aaPredicted RBP8.64□□□□□ -1.03
SMC4-227ENST00000497984 PRR23CQ6ZRP0 262 aa8.64□□□□□ -1.03
SMC4-227ENST00000497984 RBSNQ9H1K0 784 aa8.64□□□□□ -1.03
SMC4-227ENST00000497984 UBAP1LF5GYI3 381 aa8.63□□□□□ -1.03
SMC4-227ENST00000497984 F8W735 103 aaPredicted RBP8.63□□□□□ -1.03
SMC4-227ENST00000497984 PTCD1O75127 700 aaKnown RBP8.63□□□□□ -1.03
SMC4-227ENST00000497984 ZAP70P43403 619 aa8.63□□□□□ -1.03
SMC4-227ENST00000497984 PIK3R5Q8WYR1 880 aa8.63□□□□□ -1.03
SMC4-227ENST00000497984 CLP1Q92989 425 aaKnown RBP8.63□□□□□ -1.03
SMC4-227ENST00000497984 SLAIN2Q9P270 581 aa8.63□□□□□ -1.03
SMC4-227ENST00000497984 ZBTB39O15060 712 aa8.62□□□□□ -1.03
SMC4-227ENST00000497984 Q6ZS46 218 aa8.62□□□□□ -1.03
SMC4-227ENST00000497984 MAP4K3Q8IVH8 894 aa8.62□□□□□ -1.03
SMC4-227ENST00000497984 FAM13BQ9NYF5 915 aa8.62□□□□□ -1.03
SMC4-227ENST00000497984 ATP11AP98196 1134 aa8.61□□□□□ -1.03
SMC4-227ENST00000497984 ADAMTSL4Q6UY14 1074 aa8.61□□□□□ -1.03
SMC4-227ENST00000497984 CACTIN-AS1Q8N1I8 211 aa8.61□□□□□ -1.03
SMC4-227ENST00000497984 RNF112Q9ULX5 631 aa8.61□□□□□ -1.03
SMC4-227ENST00000497984 TM4SF5O14894 197 aa8.6□□□□□ -1.03
SMC4-227ENST00000497984 HYAL2Q12891 473 aa8.6□□□□□ -1.03
SMC4-227ENST00000497984 NBPF11Q86T75 865 aa8.6□□□□□ -1.03
SMC4-227ENST00000497984 GALNT11Q8NCW6 608 aa8.6□□□□□ -1.03
SMC4-227ENST00000497984 GPR152Q8TDT2 470 aa8.6□□□□□ -1.03
SMC4-227ENST00000497984 STIM2Q9P246 746 aa8.6□□□□□ -1.03
SMC4-227ENST00000497984 PPME1Q9Y570 386 aa8.6□□□□□ -1.03
SMC4-227ENST00000497984 KIF4AO95239 1232 aa8.59□□□□□ -1.03
SMC4-227ENST00000497984 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.59□□□□□ -1.03
SMC4-227ENST00000497984 AGGF1Q8N302 714 aaeCLIP8.59□□□□□ -1.032e-85■■■■■ 286.7
SMC4-227ENST00000497984 DCAF11Q8TEB1 546 aa8.59□□□□□ -1.03
SMC4-227ENST00000497984 KRTAP4-7Q9BYR0 210 aa8.59□□□□□ -1.03
SMC4-227ENST00000497984 MUC3BQ9H195 1237 aa8.59□□□□□ -1.03
SMC4-227ENST00000497984 RASSF4Q9H2L5 321 aa8.58□□□□□ -1.04
SMC4-227ENST00000497984 FNDC3AQ9Y2H6 1198 aaKnown RBP8.58□□□□□ -1.04
SMC4-227ENST00000497984 LINC01387J3KSC0 135 aa8.57□□□□□ -1.04
SMC4-227ENST00000497984 CYP2E1P05181 493 aaPredicted RBP8.57□□□□□ -1.04
SMC4-227ENST00000497984 TTC39BQ5VTQ0 682 aaPredicted RBP8.57□□□□□ -1.04
SMC4-227ENST00000497984 CEP135Q66GS9 1140 aa8.57□□□□□ -1.04
SMC4-227ENST00000497984 ABTB2Q8N961 1025 aa8.57□□□□□ -1.04
SMC4-227ENST00000497984 PBXIP1Q96AQ6 731 aa8.57□□□□□ -1.04
SMC4-227ENST00000497984 ABI2Q9NYB9 513 aaPredicted RBP8.57□□□□□ -1.04
SMC4-227ENST00000497984 SEPT3Q9UH03 358 aa8.57□□□□□ -1.04
SMC4-227ENST00000497984 WISP1O95388 367 aa8.56□□□□□ -1.04
SMC4-227ENST00000497984 FSTP19883 344 aa8.56□□□□□ -1.04
SMC4-227ENST00000497984 TXNDC11Q6PKC3 985 aa8.56□□□□□ -1.04
SMC4-227ENST00000497984 SPACA7Q96KW9 195 aa8.56□□□□□ -1.04
SMC4-227ENST00000497984 LACRTQ9GZZ8 138 aa8.56□□□□□ -1.04
SMC4-227ENST00000497984 SMNDC1O75940 238 aaKnown RBP eCLIP8.55□□□□□ -1.042e-16■■■■■ 67.6
SMC4-227ENST00000497984 ATP2B4P23634 1241 aa8.55□□□□□ -1.04
SMC4-227ENST00000497984 CDC27P30260 824 aa8.55□□□□□ -1.04
SMC4-227ENST00000497984 SCNN1AP37088 669 aa8.55□□□□□ -1.04
SMC4-227ENST00000497984 SLC51AQ86UW1 340 aa8.55□□□□□ -1.04
SMC4-227ENST00000497984 CEP120Q8N960 986 aa8.55□□□□□ -1.04
SMC4-227ENST00000497984 UBL7Q96S82 380 aaPredicted RBP8.55□□□□□ -1.04
SMC4-227ENST00000497984 PBX4Q9BYU1 374 aa8.55□□□□□ -1.04
SMC4-227ENST00000497984 KCNK4Q9NYG8 393 aa8.55□□□□□ -1.04
SMC4-227ENST00000497984 GLB1P16278 677 aa8.54□□□□□ -1.04
SMC4-227ENST00000497984 CD68P34810 354 aaPredicted RBP8.54□□□□□ -1.04
SMC4-227ENST00000497984 PDE12Q6L8Q7 609 aaKnown RBP8.54□□□□□ -1.04
SMC4-227ENST00000497984 GOLGA2P5Q9HBQ8 144 aa8.54□□□□□ -1.04
SMC4-227ENST00000497984 TMEM63CQ9P1W3 806 aa8.54□□□□□ -1.04
SMC4-227ENST00000497984 ATCAYQ86WG3 371 aa8.53□□□□□ -1.04
SMC4-227ENST00000497984 NUDT16Q96DE0 195 aaKnown RBP8.53□□□□□ -1.04
SMC4-227ENST00000497984 ZMYND15Q9H091 742 aa8.53□□□□□ -1.04
SMC4-227ENST00000497984 ELP3Q9H9T3 547 aa8.53□□□□□ -1.04
SMC4-227ENST00000497984 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.53□□□□□ -1.04
SMC4-227ENST00000497984 FSCN2O14926 492 aa8.52□□□□□ -1.05
SMC4-227ENST00000497984 EPHA1P21709 976 aa8.52□□□□□ -1.05
SMC4-227ENST00000497984 POP1Q99575 1024 aaKnown RBP8.52□□□□□ -1.05
SMC4-227ENST00000497984 CARD10Q9BWT7 1032 aa8.52□□□□□ -1.05
SMC4-227ENST00000497984 ADAM19Q9H013 955 aa8.52□□□□□ -1.05
SMC4-227ENST00000497984 SH2B1Q9NRF2 756 aaPredicted RBP8.52□□□□□ -1.05
SMC4-227ENST00000497984 CNTN3Q9P232 1028 aa8.52□□□□□ -1.05
SMC4-227ENST00000497984 RAXQ9Y2V3 346 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms