RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 CAMSAP2Q08AD1 1489 aa7.56□□□□□ -1.2
CSMD3-208ENST00000497026 PLEKHH2Q8IVE3 1493 aa7.56□□□□□ -1.2
CSMD3-208ENST00000497026 RIMS1Q86UR5 1692 aaKnown RBP7.55□□□□□ -1.2
CSMD3-208ENST00000497026 HOXB4P17483 251 aaPredicted RBP7.55□□□□□ -1.2
CSMD3-208ENST00000497026 ZNF468Q5VIY5 522 aaPredicted RBP7.55□□□□□ -1.2
CSMD3-208ENST00000497026 POTEAQ6S8J7 498 aa7.55□□□□□ -1.2
CSMD3-208ENST00000497026 SYT9Q86SS6 491 aa7.55□□□□□ -1.2
CSMD3-208ENST00000497026 SUV39H2Q9H5I1 410 aa7.55□□□□□ -1.2
CSMD3-208ENST00000497026 BRD7Q9NPI1 651 aa7.55□□□□□ -1.2
CSMD3-208ENST00000497026 MKL2Q9ULH7 1088 aa7.55□□□□□ -1.2
CSMD3-208ENST00000497026 ATP7AQ04656 1500 aa7.55□□□□□ -1.2
CSMD3-208ENST00000497026 FER1L4A9Z1Z3 1794 aa7.55□□□□□ -1.2
CSMD3-208ENST00000497026 BAG6P46379 1132 aa7.54□□□□□ -1.2
CSMD3-208ENST00000497026 HNRNPMP52272 730 aaKnown RBP eCLIP7.54□□□□□ -1.2
CSMD3-208ENST00000497026 LAMC2Q13753 1193 aa7.54□□□□□ -1.2
CSMD3-208ENST00000497026 CHSY3Q70JA7 882 aa7.54□□□□□ -1.2
CSMD3-208ENST00000497026 ALYREFQ86V81 257 aaKnown RBP7.54□□□□□ -1.2
CSMD3-208ENST00000497026 GPC6Q9Y625 555 aaPredicted RBP7.54□□□□□ -1.2
CSMD3-208ENST00000497026 PTPRMP28827 1452 aa7.54□□□□□ -1.2
CSMD3-208ENST00000497026 PLXNC1O60486 1568 aa7.54□□□□□ -1.2
CSMD3-208ENST00000497026 ADGBQ8N7X0 1667 aa7.54□□□□□ -1.2
CSMD3-208ENST00000497026 FAM200AQ8TCP9 573 aa7.53□□□□□ -1.2
CSMD3-208ENST00000497026 ZMYND15Q9H091 742 aa7.53□□□□□ -1.2
CSMD3-208ENST00000497026 ANKIB1Q9P2G1 1089 aa7.53□□□□□ -1.2
CSMD3-208ENST00000497026 MYOM3Q5VTT5 1437 aa7.53□□□□□ -1.2
CSMD3-208ENST00000497026 AGLP35573 1532 aa7.53□□□□□ -1.2
CSMD3-208ENST00000497026 ARHGEF5Q12774 1597 aa7.53□□□□□ -1.2
CSMD3-208ENST00000497026 CCDC141Q6ZP82 1450 aa7.53□□□□□ -1.2
CSMD3-208ENST00000497026 COL8A1P27658 744 aa7.52□□□□□ -1.2
CSMD3-208ENST00000497026 TYRO3Q06418 890 aa7.52□□□□□ -1.2
CSMD3-208ENST00000497026 SPEM2Q0P670 501 aa7.52□□□□□ -1.2
CSMD3-208ENST00000497026 LINC00114Q6XXX2 140 aa7.52□□□□□ -1.2
CSMD3-208ENST00000497026 STAG2Q8N3U4 1231 aa7.52□□□□□ -1.2
CSMD3-208ENST00000497026 KLK14Q9P0G3 267 aa7.52□□□□□ -1.2
CSMD3-208ENST00000497026 NOVA2Q9UNW9 492 aaKnown RBP7.52□□□□□ -1.2
CSMD3-208ENST00000497026 ARID4BQ4LE39 1312 aaPredicted RBP7.52□□□□□ -1.21
CSMD3-208ENST00000497026 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.52□□□□□ -1.21
CSMD3-208ENST00000497026 IGFBP4P22692 258 aa7.52□□□□□ -1.21
CSMD3-208ENST00000497026 BTLAQ7Z6A9 289 aa7.52□□□□□ -1.21
CSMD3-208ENST00000497026 AVENQ9NQS1 362 aaPredicted RBP7.52□□□□□ -1.21
CSMD3-208ENST00000497026 KCNH4Q9UQ05 1017 aa7.52□□□□□ -1.21
CSMD3-208ENST00000497026 MIA2Q96PC5 1412 aa7.51□□□□□ -1.21
CSMD3-208ENST00000497026 TBC1D8BQ0IIM8 1120 aa7.51□□□□□ -1.21
CSMD3-208ENST00000497026 PRIMPOLQ96LW4 560 aa7.51□□□□□ -1.21
CSMD3-208ENST00000497026 BCS1LQ9Y276 419 aa7.51□□□□□ -1.21
CSMD3-208ENST00000497026 CROCC2H7BZ55 1655 aa7.51□□□□□ -1.21
CSMD3-208ENST00000497026 PTPN23Q9H3S7 1636 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 MAST1Q9Y2H9 1570 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 RTEL1-TNFRSF6BF6WH68 1400 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 SPAG9O60271 1321 aaKnown RBP7.5□□□□□ -1.21
CSMD3-208ENST00000497026 KRBA1A5PL33 1030 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 DGKGP49619 791 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 RTN1Q16799 776 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 BHMTQ93088 406 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 IGFLR1Q9H665 355 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 GTF3C3Q9Y5Q9 886 aa7.5□□□□□ -1.21
CSMD3-208ENST00000497026 A2MP01023 1474 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 ELOA3CA0A087WX78 387 aaPredicted RBP7.49□□□□□ -1.21
CSMD3-208ENST00000497026 ELOA3DA6NLF2 546 aaPredicted RBP7.49□□□□□ -1.21
CSMD3-208ENST00000497026 PRMT3O60678 531 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 WEE1P30291 646 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 DGKZQ13574 1117 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 MLECQ14165 292 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 ELOA3BQ3SY89 546 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 LCE3BQ5TA77 95 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 ELOA3Q8NG57 546 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 STK32AQ8WU08 396 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 VTI1AQ96AJ9 217 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 ZMIZ1Q9ULJ6 1067 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 TCOF1Q13428 1488 aaKnown RBP7.49□□□□□ -1.21
CSMD3-208ENST00000497026 FGD6Q6ZV73 1430 aa7.49□□□□□ -1.21
CSMD3-208ENST00000497026 C3P01024 1663 aa7.48□□□□□ -1.21
CSMD3-208ENST00000497026 DNMT1P26358 1616 aaKnown RBP7.48□□□□□ -1.21
CSMD3-208ENST00000497026 GNB5O14775 395 aa7.48□□□□□ -1.21
CSMD3-208ENST00000497026 QTRT2Q9H974 415 aaKnown RBP7.48□□□□□ -1.21
CSMD3-208ENST00000497026 MROH2AA6NES4 1674 aa7.47□□□□□ -1.21
CSMD3-208ENST00000497026 BTBD11A6QL63 1104 aa7.47□□□□□ -1.21
CSMD3-208ENST00000497026 SIN3BO75182 1162 aa7.47□□□□□ -1.21
CSMD3-208ENST00000497026 ALAS2P22557 587 aa7.47□□□□□ -1.21
CSMD3-208ENST00000497026 C8orf86Q6ZUL3 223 aa7.47□□□□□ -1.21
CSMD3-208ENST00000497026 CLTCQ00610 1675 aaKnown RBP7.46□□□□□ -1.21
CSMD3-208ENST00000497026 LMTK3Q96Q04 1460 aa7.46□□□□□ -1.21
CSMD3-208ENST00000497026 TGFBR3LH3BV60 316 aa7.46□□□□□ -1.21
CSMD3-208ENST00000497026 FURINP09958 794 aa7.46□□□□□ -1.21
CSMD3-208ENST00000497026 KCNQ4P56696 695 aa7.46□□□□□ -1.21
CSMD3-208ENST00000497026 TRIM11Q96F44 468 aa7.46□□□□□ -1.21
CSMD3-208ENST00000497026 DMGDHQ9UI17 866 aaKnown RBP7.46□□□□□ -1.21
CSMD3-208ENST00000497026 ABCC5O15440 1437 aa7.46□□□□□ -1.22
CSMD3-208ENST00000497026 SHANK2Q9UPX8 1470 aa7.46□□□□□ -1.22
CSMD3-208ENST00000497026 FOXO3O43524 673 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 GRNP28799 593 aaKnown RBP7.45□□□□□ -1.22
CSMD3-208ENST00000497026 ADH7P40394 386 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 IDH3AP50213 366 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 DAPK1P53355 1430 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 SRPK2P78362 688 aaKnown RBP7.45□□□□□ -1.22
CSMD3-208ENST00000497026 FKBP5Q13451 457 aaPredicted RBP7.45□□□□□ -1.22
CSMD3-208ENST00000497026 NEUROD1Q13562 356 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 HIF1AQ16665 826 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 MDFIQ99750 246 aa7.45□□□□□ -1.22
CSMD3-208ENST00000497026 USP20Q9Y2K6 914 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms