RNA–Protein interactions for RNA: ENST00000497018.1

UBR4-217, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 183 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-217	ENST00000497018	SHD	Q96IW2	340 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	RHOV	Q96L33	236 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	DNAJC7	Q99615	494 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	APBA2	Q99767	749 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	TRIM55	Q9BYV6	548 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	GGNBP2	Q9H3C7	697 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	CHST12	Q9NRB3	414 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	BSDC1	Q9NW68	430 aa	Predicted RBP	2.55	□□□□□ -2
UBR4-217	ENST00000497018	TSR3	Q9UJK0	312 aa	Known RBP	2.55	□□□□□ -2
UBR4-217	ENST00000497018	EFR3B	Q9Y2G0	817 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	LAS1L	Q9Y4W2	734 aa	Known RBP	2.55	□□□□□ -2
UBR4-217	ENST00000497018	MRVI1	Q9Y6F6	885 aa		2.55	□□□□□ -2
UBR4-217	ENST00000497018	BCORL1	Q5H9F3	1711 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	SETBP1	Q9Y6X0	1596 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	YEATS2	Q9ULM3	1422 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018		A6NJY4	79 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	BHMG1	C9JSJ3	638 aa	Predicted RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	KIF3B	O15066	747 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	SH3BP5	O60239	455 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	STAT3	P40763	770 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	WNT7B	P56706	349 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	SET	Q01105	290 aa	Predicted RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	FAM50A	Q14320	339 aa	Known RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	DHX8	Q14562	1220 aa	Known RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	AGER	Q15109	404 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	DDR2	Q16832	855 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	TM4SF20	Q53R12	229 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	TBCEL	Q5QJ74	424 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	ZFYVE27	Q5T4F4	411 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	SH3PXD2A	Q5TCZ1	1133 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	DMRTA1	Q5VZB9	504 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	PCNX4	Q63HM2	1172 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	NYAP1	Q6ZVC0	841 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	BPHL	Q86WA6	291 aa	Predicted RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	SAMD3	Q8N6K7	520 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	C3orf58	Q8NDZ4	430 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	EPS8L3	Q8TE67	593 aa	Known RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	ZDHHC1	Q8WTX9	485 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	CCDC74A	Q96AQ1	378 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	ZNF512B	Q96KM6	892 aa	Predicted RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	SENP7	Q9BQF6	1050 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	TRIM56	Q9BRZ2	755 aa	Known RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	NT5C1A	Q9BXI3	368 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	SRCIN1	Q9C0H9	1055 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	ARNT2	Q9HBZ2	717 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	2.54	□□□□□ -2	2e-6	■■■■■ 149.1
UBR4-217	ENST00000497018	CDV3	Q9UKY7	258 aa	Known RBP	2.54	□□□□□ -2
UBR4-217	ENST00000497018	PNMA2	Q9UL42	364 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	ATP8A1	Q9Y2Q0	1164 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	HRH3	Q9Y5N1	445 aa		2.54	□□□□□ -2
UBR4-217	ENST00000497018	TEX14	Q8IWB6	1497 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018		A0A087X0B3	334 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	CCDC189	A1A4V9	331 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	ERVH48-1	M5A8F1	160 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	IFRD1	O00458	451 aa	Predicted RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	SMAD7	O15105	426 aa	Known RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	PDPK1	O15530	556 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	GREM1	O60565	184 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	SCGB1D2	O95969	90 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	LDHA	P00338	332 aa	Known RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	PML	P29590	882 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	EIF4A3	P38919	411 aa	Known RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	EPHB1	P54762	984 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	EMP3	P54852	163 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	CHMP4BP1	P59074	171 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	MCL1	Q07820	350 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	FOXD4	Q12950	439 aa	Predicted RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	DGKZ	Q13574	1117 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	GRIN2C	Q14957	1233 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	LRRC41	Q15345	812 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	TTF1	Q15361	905 aa	Predicted RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	VPS72	Q15906	364 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	RTN1	Q16799	776 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	C1orf53	Q5VUE5	145 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	DDX42	Q86XP3	938 aa	Known RBP eCLIP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	ZNF687	Q8N1G0	1237 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	ZNF511	Q8NB15	262 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	GLIS3	Q8NEA6	775 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	THAP3	Q8WTV1	239 aa	Predicted RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	ZNF296	Q8WUU4	475 aa	Predicted RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	NUDT16	Q96DE0	195 aa	Known RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	CCDC136	Q96JN2	1154 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	SCYL1	Q96KG9	808 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	TMEM74	Q96NL1	305 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	CEP89	Q96ST8	783 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	SPSB2	Q99619	263 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	SRRT	Q9BXP5	876 aa	Known RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	PCGF6	Q9BYE7	350 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	ZNF700	Q9H0M5	742 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	ENAM	Q9NRM1	1142 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	SERTAD1	Q9UHV2	236 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	FOXD3	Q9UJU5	478 aa	Predicted RBP	2.53	□□□□□ -2
UBR4-217	ENST00000497018	HPS5	Q9UPZ3	1129 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	PLAA	Q9Y263	795 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	MAP4K5	Q9Y4K4	846 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	PTCH2	Q9Y6C5	1203 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	COMMD10	Q9Y6G5	202 aa		2.53	□□□□□ -2
UBR4-217	ENST00000497018	AQR	O60306	1485 aa	Known RBP eCLIP	2.52	□□□□□ -2.01	9e-10	■■■■■ 46.4
UBR4-217	ENST00000497018	SHTN1	A0MZ66	631 aa		2.52	□□□□□ -2.01
UBR4-217	ENST00000497018	SOWAHB	A6NEL2	793 aa		2.52	□□□□□ -2.01

Retrieved 100 of 20,778 RNA–protein pairs in 238.9 ms