RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 NDEL1Q9GZM8 345 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 CEP126Q9P2H0 1117 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 ME1P48163 572 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 NSMCE1Q8WV22 266 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 ZNF428Q96B54 188 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 CALML4Q96GE6 196 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 CNOT7Q9UIV1 285 aaKnown RBP6.6□□□□□ -1.35
USF3-204ENST00000496826 KRT7P08729 469 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 LARSQ9P2J5 1176 aaKnown RBP6.6□□□□□ -1.35
USF3-204ENST00000496826 COPG2Q9UBF2 871 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 NMIQ13287 307 aaPredicted RBP6.6□□□□□ -1.35
USF3-204ENST00000496826 TBC1D10BQ4KMP7 808 aaPredicted RBP6.6□□□□□ -1.35
USF3-204ENST00000496826 TMEM57Q8N5G2 664 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 SELENOOQ9BVL4 669 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 FAM95CA0A1B0GW59 222 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 FOSBP53539 338 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 ATP11AP98196 1134 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 GLE1Q53GS7 698 aaKnown RBP6.6□□□□□ -1.35
USF3-204ENST00000496826 FAM169AQ9Y6X4 670 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 KRT5P13647 590 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 NLRP9Q7RTR0 991 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 TBC1D5Q92609 795 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 MAN1A2O60476 641 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 PFDN1O60925 122 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 MYO1EQ12965 1108 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 TRIM14Q14142 442 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 KIAA0753Q2KHM9 967 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 USP6NLQ92738 828 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 LRRC37BQ96QE4 947 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 TXLNGQ9NUQ3 528 aa6.6□□□□□ -1.35
USF3-204ENST00000496826 BBOF1Q8ND07 529 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 PNISRQ8TF01 805 aaKnown RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 MYCBPQ99417 103 aaPredicted RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 CARD9Q9H257 536 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 TOP1P11387 765 aaKnown RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 IQCB1Q15051 598 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 CNGA2Q16280 664 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 TTC19Q6DKK2 380 aaPredicted RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 TBC1D22AQ8WUA7 517 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 MTRF1LQ9UGC7 380 aaKnown RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 RASSF2P50749 326 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 SAFB2Q14151 953 aaKnown RBP eCLIP6.59□□□□□ -1.35
USF3-204ENST00000496826 C9orf78Q9NZ63 289 aaPredicted RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 VPS18Q9P253 973 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 KDM2AQ9Y2K7 1162 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 ZBED9Q6R2W3 1325 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 OCM2P0CE71 109 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 OCMP0CE72 109 aaPredicted RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 HSPA5P11021 654 aaKnown RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 EIF5P55010 431 aaKnown RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 TMEM266Q2M3C6 531 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 TNNQ9UQP3 1299 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 ZNF197O14709 1029 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 TRIM42Q8IWZ5 723 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 LMBR1Q8WVP7 490 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 GINS4Q9BRT9 223 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 EVC2Q86UK5 1308 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 STX6O43752 255 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 TUBB4AP04350 444 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 GNAI3P08754 354 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 BPIFB4P59827 614 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 CATSPER3Q86XQ3 398 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 CNPY4Q8N129 248 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 CCHCR1Q8TD31 782 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 NUP133Q8WUM0 1156 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 ZNF652Q9Y2D9 606 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.59□□□□□ -1.35
USF3-204ENST00000496826 CD2APQ9Y5K6 639 aa6.59□□□□□ -1.35
USF3-204ENST00000496826 BUB1BO60566 1050 aaPredicted RBP6.59□□□□□ -1.36
USF3-204ENST00000496826 LDHCP07864 332 aa6.59□□□□□ -1.36
USF3-204ENST00000496826 AMPD3Q01432 767 aa6.59□□□□□ -1.36
USF3-204ENST00000496826 MAP3K10Q02779 954 aa6.59□□□□□ -1.36
USF3-204ENST00000496826 UPF3BQ9BZI7 483 aaKnown RBP6.59□□□□□ -1.36
USF3-204ENST00000496826 IMPG2Q9BZV3 1241 aa6.59□□□□□ -1.36
USF3-204ENST00000496826 ARFGAP3Q9NP61 516 aa6.59□□□□□ -1.36
USF3-204ENST00000496826 STMN3Q9NZ72 180 aa6.59□□□□□ -1.36
USF3-204ENST00000496826 ZNF212Q9UDV6 495 aa6.59□□□□□ -1.36
USF3-204ENST00000496826 GSNP06396 782 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 PYGMP11217 842 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 LRRC8EQ6NSJ5 796 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 ENAHQ8N8S7 591 aaPredicted RBP6.58□□□□□ -1.36
USF3-204ENST00000496826 ATP11CQ8NB49 1132 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 ZHX3Q9H4I2 956 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 ANO2Q9NQ90 1003 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 WASHC5Q12768 1159 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 TBCCQ15814 346 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 CNGA4Q8IV77 575 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 POLR3DP05423 398 aaPredicted RBP6.58□□□□□ -1.36
USF3-204ENST00000496826 DEUP1Q05D60 604 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 FYB2Q5VWT5 728 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 ST13P4Q8IZP2 240 aaPredicted RBP6.58□□□□□ -1.36
USF3-204ENST00000496826 EXOC4Q96A65 974 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 TUBGCP2Q9BSJ2 902 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 GOPCQ9HD26 462 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 WHAMMP3Q1A5X7 153 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 HS1BP3Q53T59 392 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 GPR161Q8N6U8 529 aaKnown RBP6.58□□□□□ -1.36
USF3-204ENST00000496826 MYLK2Q9H1R3 596 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 CCPG1Q9ULG6 757 aa6.58□□□□□ -1.36
USF3-204ENST00000496826 RRBP1Q9P2E9 1410 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms