RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 C8orf34Q49A92 452 aa10.07□□□□□ -0.8
CCDC39-207ENST00000495817 PSAPL1Q6NUJ1 521 aa10.07□□□□□ -0.8
CCDC39-207ENST00000495817 RBSNQ9H1K0 784 aa10.07□□□□□ -0.8
CCDC39-207ENST00000495817 BRPF3Q9ULD4 1205 aa10.07□□□□□ -0.8
CCDC39-207ENST00000495817 ZBTB42B2RXF5 422 aa10.06□□□□□ -0.8
CCDC39-207ENST00000495817 CPB1P15086 417 aa10.06□□□□□ -0.8
CCDC39-207ENST00000495817 TTC9Q92623 222 aa10.06□□□□□ -0.8
CCDC39-207ENST00000495817 CITED4Q96RK1 184 aa10.06□□□□□ -0.8
CCDC39-207ENST00000495817 JPH1Q9HDC5 661 aaPredicted RBP10.06□□□□□ -0.8
CCDC39-207ENST00000495817 LOC102724428A0A0B4J2F2 783 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 RGS9O75916 674 aaPredicted RBP10.05□□□□□ -0.8
CCDC39-207ENST00000495817 EIF2AK2P19525 551 aaKnown RBP10.05□□□□□ -0.8
CCDC39-207ENST00000495817 RANGAP1P46060 587 aaPredicted RBP10.05□□□□□ -0.8
CCDC39-207ENST00000495817 GSK3AP49840 483 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 SIK1P57059 783 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 RASSF7Q02833 373 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 HYAL2Q12891 473 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 ELMSAN1Q6PJG2 1045 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 SNX29Q8TEQ0 813 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 NSUN5Q96P11 429 aaKnown RBP10.05□□□□□ -0.8
CCDC39-207ENST00000495817 GGNBP2Q9H3C7 697 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 CCDC87Q9NVE4 849 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 TMEM63CQ9P1W3 806 aa10.05□□□□□ -0.8
CCDC39-207ENST00000495817 GHRHP01286 108 aa10.04□□□□□ -0.8
CCDC39-207ENST00000495817 MLLT1Q03111 559 aaPredicted RBP10.04□□□□□ -0.8
CCDC39-207ENST00000495817 PERM1Q5SV97 790 aa10.04□□□□□ -0.8
CCDC39-207ENST00000495817 PMEPA1Q969W9 287 aa10.04□□□□□ -0.8
CCDC39-207ENST00000495817 LPIN3Q9BQK8 851 aa10.04□□□□□ -0.8
CCDC39-207ENST00000495817 KIF4AO95239 1232 aa10.03□□□□□ -0.8
CCDC39-207ENST00000495817 NID1P14543 1247 aa10.03□□□□□ -0.8
CCDC39-207ENST00000495817 PDE3BQ13370 1112 aa10.03□□□□□ -0.8
CCDC39-207ENST00000495817 TRIM11Q96F44 468 aa10.03□□□□□ -0.8
CCDC39-207ENST00000495817 SPACA7Q96KW9 195 aa10.03□□□□□ -0.8
CCDC39-207ENST00000495817 COL9A3Q14050 684 aaPredicted RBP10.02□□□□□ -0.81
CCDC39-207ENST00000495817 TNFRSF21O75509 655 aa10.01□□□□□ -0.81
CCDC39-207ENST00000495817 AFF1P51825 1210 aaKnown RBP10.01□□□□□ -0.81
CCDC39-207ENST00000495817 TMEM151AQ8N4L1 468 aa10.01□□□□□ -0.81
CCDC39-207ENST00000495817 NUDT8Q8WV74 236 aa10.01□□□□□ -0.81
CCDC39-207ENST00000495817 PLD4Q96BZ4 506 aa10.01□□□□□ -0.81
CCDC39-207ENST00000495817 SMG9Q9H0W8 520 aaKnown RBP10.01□□□□□ -0.81
CCDC39-207ENST00000495817 A6NHS1 94 aa10□□□□□ -0.81
CCDC39-207ENST00000495817 GDF11O95390 407 aa10□□□□□ -0.81
CCDC39-207ENST00000495817 CES1P23141 567 aa10□□□□□ -0.81
CCDC39-207ENST00000495817 HFE2Q6ZVN8 426 aa10□□□□□ -0.81
CCDC39-207ENST00000495817 CACTIN-AS1Q8N1I8 211 aa10□□□□□ -0.81
CCDC39-207ENST00000495817 FAM129BQ96TA1 746 aa10□□□□□ -0.81
CCDC39-207ENST00000495817 PLVAPQ9BX97 442 aa10□□□□□ -0.81
CCDC39-207ENST00000495817 PHACTR2O75167 634 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 NEFLP07196 543 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 COL8A1P27658 744 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 PRRT3Q5FWE3 981 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 C8orf86Q6ZUL3 223 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 NCAPG2Q86XI2 1143 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 DCAF5Q96JK2 942 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 RBCK1Q9BYM8 510 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 SUV39H2Q9H5I1 410 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 CNTN3Q9P232 1028 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 BIN2Q9UBW5 565 aaPredicted RBP9.99□□□□□ -0.81
CCDC39-207ENST00000495817 AMOTL2Q9Y2J4 779 aa9.99□□□□□ -0.81
CCDC39-207ENST00000495817 J3QW42 95 aa9.98□□□□□ -0.81
CCDC39-207ENST00000495817 SPATA31C1P0DKV0 1188 aa9.98□□□□□ -0.81
CCDC39-207ENST00000495817 ERCC3P19447 782 aa9.98□□□□□ -0.81
CCDC39-207ENST00000495817 C1orf127Q8N9H9 656 aa9.98□□□□□ -0.81
CCDC39-207ENST00000495817 CHRDQ9H2X0 955 aa9.98□□□□□ -0.81
CCDC39-207ENST00000495817 CYP2E1P05181 493 aaPredicted RBP9.97□□□□□ -0.81
CCDC39-207ENST00000495817 GRIK5Q16478 980 aa9.97□□□□□ -0.81
CCDC39-207ENST00000495817 COL13A1Q5TAT6 717 aaPredicted RBP9.97□□□□□ -0.81
CCDC39-207ENST00000495817 DTWD1Q8N5C7 304 aa9.97□□□□□ -0.81
CCDC39-207ENST00000495817 DMRTB1Q96MA1 342 aa9.97□□□□□ -0.81
CCDC39-207ENST00000495817 SALL4Q9UJQ4 1053 aa9.97□□□□□ -0.81
CCDC39-207ENST00000495817 DCTN4Q9UJW0 460 aa9.97□□□□□ -0.81
CCDC39-207ENST00000495817 SMNDC1O75940 238 aaKnown RBP eCLIP9.96□□□□□ -0.82
CCDC39-207ENST00000495817 EDN3P14138 238 aa9.96□□□□□ -0.82
CCDC39-207ENST00000495817 MSL1Q68DK7 614 aa9.96□□□□□ -0.82
CCDC39-207ENST00000495817 WFDC8Q8IUA0 241 aa9.96□□□□□ -0.82
CCDC39-207ENST00000495817 CEP120Q8N960 986 aa9.96□□□□□ -0.82
CCDC39-207ENST00000495817 FOXD4L4Q8WXT5 416 aaPredicted RBP9.96□□□□□ -0.82
CCDC39-207ENST00000495817 KANSL3Q9P2N6 904 aa9.96□□□□□ -0.82
CCDC39-207ENST00000495817 RAC1P63000 192 aa9.95□□□□□ -0.82
CCDC39-207ENST00000495817 ALKBH8Q96BT7 664 aaKnown RBP9.95□□□□□ -0.82
CCDC39-207ENST00000495817 FOXD3Q9UJU5 478 aaPredicted RBP9.95□□□□□ -0.82
CCDC39-207ENST00000495817 TRIM28Q13263 835 aaKnown RBP9.94□□□□□ -0.82
CCDC39-207ENST00000495817 TRAPPC3LQ5T215 181 aa9.94□□□□□ -0.82
CCDC39-207ENST00000495817 ILDR2Q71H61 639 aa9.94□□□□□ -0.82
CCDC39-207ENST00000495817 PBX4Q9BYU1 374 aa9.94□□□□□ -0.82
CCDC39-207ENST00000495817 MUC3BQ9H195 1237 aa9.94□□□□□ -0.82
CCDC39-207ENST00000495817 SRA1Q9HD15 236 aaKnown RBP9.94□□□□□ -0.82
CCDC39-207ENST00000495817 ATP11AP98196 1134 aa9.93□□□□□ -0.82
CCDC39-207ENST00000495817 TMC1Q8TDI8 760 aa9.93□□□□□ -0.82
CCDC39-207ENST00000495817 ZFYVE28Q9HCC9 887 aa9.93□□□□□ -0.82
CCDC39-207ENST00000495817 A0A0A0MRY4 1105 aa9.92□□□□□ -0.82
CCDC39-207ENST00000495817 EREGO14944 169 aa9.92□□□□□ -0.82
CCDC39-207ENST00000495817 IGHA2P01877 340 aa9.92□□□□□ -0.82
CCDC39-207ENST00000495817 ELNP15502 786 aa9.92□□□□□ -0.82
CCDC39-207ENST00000495817 DNAJC14Q6Y2X3 702 aaPredicted RBP9.92□□□□□ -0.82
CCDC39-207ENST00000495817 DCAF11Q8TEB1 546 aa9.92□□□□□ -0.82
CCDC39-207ENST00000495817 RASSF4Q9H2L5 321 aa9.92□□□□□ -0.82
CCDC39-207ENST00000495817 GPR182O15218 404 aa9.91□□□□□ -0.82
CCDC39-207ENST00000495817 CEP135Q66GS9 1140 aa9.91□□□□□ -0.82
CCDC39-207ENST00000495817 MAP4K3Q8IVH8 894 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms