RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 NEXNQ0ZGT2 675 aa14.91□□□□□ -0.02
COL6A3-213ENST00000493475 CCDC191Q8NCU4 936 aa14.91□□□□□ -0.02
COL6A3-213ENST00000493475 STK31Q9BXU1 1019 aa14.91□□□□□ -0.02
COL6A3-213ENST00000493475 ANKIB1Q9P2G1 1089 aa14.91□□□□□ -0.02
COL6A3-213ENST00000493475 APAF1O14727 1248 aa14.9□□□□□ -0.02
COL6A3-213ENST00000493475 RTL5Q5HYW3 569 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-213ENST00000493475 MICALL2Q8IY33 904 aa14.9□□□□□ -0.02
COL6A3-213ENST00000493475 DCPSQ96C86 337 aaKnown RBP14.9□□□□□ -0.02
COL6A3-213ENST00000493475 ZNF408Q9H9D4 720 aa14.9□□□□□ -0.02
COL6A3-213ENST00000493475 CWC25Q9NXE8 425 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-213ENST00000493475 PGAP2Q9UHJ9 254 aa14.9□□□□□ -0.02
COL6A3-213ENST00000493475 TRAF5O00463 557 aa14.89□□□□□ -0.03
COL6A3-213ENST00000493475 RIMBP2O15034 1052 aa14.89□□□□□ -0.03
COL6A3-213ENST00000493475 CYP4F22Q6NT55 531 aa14.89□□□□□ -0.03
COL6A3-213ENST00000493475 CELF1Q92879 486 aaKnown RBP14.89□□□□□ -0.03
COL6A3-213ENST00000493475 PDE8AO60658 829 aa14.88□□□□□ -0.03
COL6A3-213ENST00000493475 PCCAP05165 728 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-213ENST00000493475 ZNF853P0CG23 659 aa14.88□□□□□ -0.03
COL6A3-213ENST00000493475 SAPCD2Q86UD0 394 aa14.88□□□□□ -0.03
COL6A3-213ENST00000493475 CDC5LQ99459 802 aaKnown RBP14.88□□□□□ -0.03
COL6A3-213ENST00000493475 MYD88Q99836 296 aa14.88□□□□□ -0.03
COL6A3-213ENST00000493475 GLIS2Q9BZE0 524 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-213ENST00000493475 DBNDD1Q9H9R9 158 aa14.88□□□□□ -0.03
COL6A3-213ENST00000493475 GGA1Q9UJY5 639 aa14.88□□□□□ -0.03
COL6A3-213ENST00000493475 LTBP1Q14766 1721 aa14.88□□□□□ -0.03
COL6A3-213ENST00000493475 ELL2O00472 640 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-213ENST00000493475 PSMD14O00487 310 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 ECE2O60344 883 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 UFL1O94874 794 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 HSPA8P11142 646 aaKnown RBP14.87□□□□□ -0.03
COL6A3-213ENST00000493475 GPSM2P81274 684 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 NOGQ13253 232 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 MKRN4PQ13434 485 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-213ENST00000493475 CST9Q5W186 159 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 ANKRD18AQ8IVF6 992 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 ZNF428Q96B54 188 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 PODXL2Q9NZ53 605 aa14.87□□□□□ -0.03
COL6A3-213ENST00000493475 LAMB2P55268 1798 aa14.86□□□□□ -0.03
COL6A3-213ENST00000493475 PRKAR2AP13861 404 aaKnown RBP14.86□□□□□ -0.03
COL6A3-213ENST00000493475 BRPF1P55201 1214 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-213ENST00000493475 KRT26Q7Z3Y9 468 aa14.86□□□□□ -0.03
COL6A3-213ENST00000493475 SULF1Q8IWU6 871 aa14.86□□□□□ -0.03
COL6A3-213ENST00000493475 C2orf69Q8N8R5 385 aa14.86□□□□□ -0.03
COL6A3-213ENST00000493475 TBC1D16Q8TBP0 767 aa14.86□□□□□ -0.03
COL6A3-213ENST00000493475 METTL22Q9BUU2 404 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-213ENST00000493475 LRRC37AA6NMS7 1700 aa14.86□□□□□ -0.03
COL6A3-213ENST00000493475 YDJCA8MPS7 323 aa14.85□□□□□ -0.03
COL6A3-213ENST00000493475 DOK7Q18PE1 504 aa14.85□□□□□ -0.03
COL6A3-213ENST00000493475 SLC51AQ86UW1 340 aa14.85□□□□□ -0.03
COL6A3-213ENST00000493475 TRPM4Q8TD43 1214 aa14.85□□□□□ -0.03
COL6A3-213ENST00000493475 PHAXQ9H814 394 aaKnown RBP14.85□□□□□ -0.03
COL6A3-213ENST00000493475 POLLQ9UGP5 575 aa14.85□□□□□ -0.03
COL6A3-213ENST00000493475 XDHP47989 1333 aa14.85□□□□□ -0.03
COL6A3-213ENST00000493475 TRPM7Q96QT4 1865 aa14.84□□□□□ -0.03
COL6A3-213ENST00000493475 ATP2B4P23634 1241 aa14.84□□□□□ -0.03
COL6A3-213ENST00000493475 HUNKP57058 714 aa14.84□□□□□ -0.03
COL6A3-213ENST00000493475 TBC1D10BQ4KMP7 808 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-213ENST00000493475 DDX60Q8IY21 1712 aaKnown RBP14.83□□□□□ -0.03
COL6A3-213ENST00000493475 FMR1Q06787 632 aaKnown RBP eCLIP14.83□□□□□ -0.04
COL6A3-213ENST00000493475 KIF4BQ2VIQ3 1234 aa14.83□□□□□ -0.04
COL6A3-213ENST00000493475 RBM26Q5T8P6 1007 aaKnown RBP14.83□□□□□ -0.04
COL6A3-213ENST00000493475 KSR2Q6VAB6 950 aa14.83□□□□□ -0.04
COL6A3-213ENST00000493475 SAMD7Q7Z3H4 446 aa14.83□□□□□ -0.04
COL6A3-213ENST00000493475 USP48Q86UV5 1035 aa14.83□□□□□ -0.04
COL6A3-213ENST00000493475 AGBL3Q8NEM8 1001 aa14.83□□□□□ -0.04
COL6A3-213ENST00000493475 CCDC102AQ96A19 550 aa14.83□□□□□ -0.04
COL6A3-213ENST00000493475 MAP3K2Q9Y2U5 619 aa14.83□□□□□ -0.04
COL6A3-213ENST00000493475 DUOX1Q9NRD9 1551 aa14.82□□□□□ -0.04
COL6A3-213ENST00000493475 THSD7BQ9C0I4 1608 aa14.82□□□□□ -0.04
COL6A3-213ENST00000493475 VIL1P09327 827 aaKnown RBP14.82□□□□□ -0.04
COL6A3-213ENST00000493475 HIRAP54198 1017 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-213ENST00000493475 CTSWP56202 376 aa14.82□□□□□ -0.04
COL6A3-213ENST00000493475 CCDC27Q2M243 656 aa14.82□□□□□ -0.04
COL6A3-213ENST00000493475 PODNQ7Z5L7 613 aa14.82□□□□□ -0.04
COL6A3-213ENST00000493475 C8orf58Q8NAV2 365 aa14.82□□□□□ -0.04
COL6A3-213ENST00000493475 GBA2Q9HCG7 927 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-213ENST00000493475 AOC2O75106 756 aa14.81□□□□□ -0.04
COL6A3-213ENST00000493475 IGHMBP2P38935 993 aaKnown RBP14.81□□□□□ -0.04
COL6A3-213ENST00000493475 MMP14P50281 582 aa14.81□□□□□ -0.04
COL6A3-213ENST00000493475 OGFOD1Q8N543 542 aa14.81□□□□□ -0.04
COL6A3-213ENST00000493475 ABHD8Q96I13 439 aa14.81□□□□□ -0.04
COL6A3-213ENST00000493475 MYH16Q9H6N6 1097 aa14.81□□□□□ -0.04
COL6A3-213ENST00000493475 SEC31BQ9NQW1 1179 aa14.81□□□□□ -0.04
COL6A3-213ENST00000493475 PI4KAP2A4QPH2 592 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 USP17L3A6NCW0 530 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 USP17L4A6NCW7 530 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 C19orf67A6NJJ6 358 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 TWISTNBQ3B726 338 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-213ENST00000493475 RGMBQ6NW40 437 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 RSBN1LQ6PCB5 846 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-213ENST00000493475 USP17L1Q7RTZ2 530 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 PI4KAP1Q8N8J0 262 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 SPDYE1Q8NFV5 336 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-213ENST00000493475 CCDC85AQ96PX6 553 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-213ENST00000493475 GGA3Q9NZ52 723 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 IL16Q14005 1332 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 MYO3BQ8WXR4 1341 aa14.8□□□□□ -0.04
COL6A3-213ENST00000493475 USP17L8P0C7I0 530 aa14.79□□□□□ -0.04
COL6A3-213ENST00000493475 ZNF157P51786 506 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-213ENST00000493475 FKBP1BP68106 108 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms