RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 IGHMBP2P38935 993 aaKnown RBP21.37■■□□□ 1.01
LIME1-208ENST00000493265 GRAPQ13588 217 aa21.37■■□□□ 1.01
LIME1-208ENST00000493265 GRAPLQ8TC17 118 aaPredicted RBP21.37■■□□□ 1.01
LIME1-208ENST00000493265 SSH3Q8TE77 659 aa21.37■■□□□ 1.01
LIME1-208ENST00000493265 CRAMP1Q96RY5 1269 aa21.37■■□□□ 1.01
LIME1-208ENST00000493265 ALDH1B1P30837 517 aa21.36■■□□□ 1.01
LIME1-208ENST00000493265 RFX5P48382 616 aaPredicted RBP21.36■■□□□ 1.01
LIME1-208ENST00000493265 RPS8P62241 208 aaKnown RBP21.36■■□□□ 1.01
LIME1-208ENST00000493265 POLA2Q14181 598 aa21.36■■□□□ 1.01
LIME1-208ENST00000493265 MPHOSPH8Q99549 860 aa21.36■■□□□ 1.01
LIME1-208ENST00000493265 CACNA1SQ13698 1873 aa21.36■■□□□ 1.01
LIME1-208ENST00000493265 LMNB1P20700 586 aa21.35■■□□□ 1.01
LIME1-208ENST00000493265 PRELPP51888 382 aa21.35■■□□□ 1.01
LIME1-208ENST00000493265 PTPN12Q05209 780 aaKnown RBP21.35■■□□□ 1.01
LIME1-208ENST00000493265 TTLL6Q8N841 843 aa21.35■■□□□ 1.01
LIME1-208ENST00000493265 CNKSR1Q969H4 720 aa21.35■■□□□ 1.01
LIME1-208ENST00000493265 PUS3Q9BZE2 481 aaKnown RBP21.35■■□□□ 1.01
LIME1-208ENST00000493265 CNNM1Q9NRU3 951 aa21.35■■□□□ 1.01
LIME1-208ENST00000493265 PPEF1O14829 653 aaPredicted RBP21.34■■□□□ 1.01
LIME1-208ENST00000493265 SURF6O75683 361 aaKnown RBP21.34■■□□□ 1.01
LIME1-208ENST00000493265 OS9Q13438 667 aaPredicted RBP21.34■■□□□ 1.01
LIME1-208ENST00000493265 PRPF40BQ6NWY9 871 aaKnown RBP21.34■■□□□ 1.01
LIME1-208ENST00000493265 LDHAL6AQ6ZMR3 332 aa21.34■■□□□ 1.01
LIME1-208ENST00000493265 SLC51AQ86UW1 340 aa21.34■■□□□ 1.01
LIME1-208ENST00000493265 KLRG1Q96E93 195 aa21.34■■□□□ 1.01
LIME1-208ENST00000493265 ZC3H4Q9UPT8 1303 aaKnown RBP21.33■■□□□ 1.01
LIME1-208ENST00000493265 APBB1O00213 710 aa21.33■■□□□ 1.01
LIME1-208ENST00000493265 LRRC24Q50LG9 513 aa21.33■■□□□ 1.01
LIME1-208ENST00000493265 BCL11AQ9H165 835 aa21.33■■□□□ 1.01
LIME1-208ENST00000493265 RWDD1Q9H446 243 aaPredicted RBP21.33■■□□□ 1.01
LIME1-208ENST00000493265 EXOC6BQ9Y2D4 811 aa21.33■■□□□ 1.01
LIME1-208ENST00000493265 BBOX1O75936 387 aa21.32■■□□□ 1
LIME1-208ENST00000493265 G3BP1Q13283 466 aaKnown RBP eCLIP21.32■■□□□ 1
LIME1-208ENST00000493265 SMC1BQ8NDV3 1235 aa21.32■■□□□ 1
LIME1-208ENST00000493265 COPRSQ9NQ92 184 aa21.32■■□□□ 1
LIME1-208ENST00000493265 IGHDP01880 384 aa21.31■■□□□ 1
LIME1-208ENST00000493265 OLFM4Q6UX06 510 aa21.31■■□□□ 1
LIME1-208ENST00000493265 SLX4Q8IY92 1834 aa21.3■■□□□ 1
LIME1-208ENST00000493265 GLTPD2A6NH11 291 aa21.3■■□□□ 1
LIME1-208ENST00000493265 EYA2O00167 538 aa21.3■■□□□ 1
LIME1-208ENST00000493265 NFKBIEO00221 500 aa21.3■■□□□ 1
LIME1-208ENST00000493265 CCDC136Q96JN2 1154 aa21.3■■□□□ 1
LIME1-208ENST00000493265 BSDC1Q9NW68 430 aaPredicted RBP21.3■■□□□ 1
LIME1-208ENST00000493265 C21orf2O43822 256 aa21.29■■□□□ 1
LIME1-208ENST00000493265 HDAC1Q13547 482 aaPredicted RBP21.29■■□□□ 1
LIME1-208ENST00000493265 ERICH6BQ5W0A0 696 aa21.29■■□□□ 1
LIME1-208ENST00000493265 HELBQ8NG08 1087 aaPredicted RBP21.29■■□□□ 1
LIME1-208ENST00000493265 TMX4Q9H1E5 349 aaPredicted RBP21.29■■□□□ 1
LIME1-208ENST00000493265 DICER1Q9UPY3 1922 aaKnown RBP21.28■■□□□ 1
LIME1-208ENST00000493265 METTL24Q5JXM2 366 aa21.28■■□□□ 1
LIME1-208ENST00000493265 B4GALNT3Q6L9W6 998 aa21.28■■□□□ 1
LIME1-208ENST00000493265 ATG9AQ7Z3C6 839 aa21.28■■□□□ 1
LIME1-208ENST00000493265 JMYQ8N9B5 988 aa21.28■■□□□ 1
LIME1-208ENST00000493265 PPP4R2Q9NY27 417 aa21.28■■□□□ 1
LIME1-208ENST00000493265 ATP6V0A2Q9Y487 856 aa21.28■■□□□ 1
LIME1-208ENST00000493265 FER1L6Q2WGJ9 1857 aa21.28■■□□□ 1
LIME1-208ENST00000493265 VEGFAP15692 232 aaPredicted RBP21.27■■□□□ 1
LIME1-208ENST00000493265 MINPP1Q9UNW1 487 aa21.27■■□□□ 1
LIME1-208ENST00000493265 RIPOR2Q9Y4F9 1068 aa21.27■■□□□ 1
LIME1-208ENST00000493265 GTF3C3Q9Y5Q9 886 aa21.27■■□□□ 1
LIME1-208ENST00000493265 TAF5LO75529 589 aa21.26■□□□□ 0.99
LIME1-208ENST00000493265 CIAO1O76071 339 aa21.26■□□□□ 0.99
LIME1-208ENST00000493265 IL15P40933 162 aaPredicted RBP21.26■□□□□ 0.99
LIME1-208ENST00000493265 CHRNDQ07001 517 aa21.26■□□□□ 0.99
LIME1-208ENST00000493265 TMC4Q7Z404 712 aa21.26■□□□□ 0.99
LIME1-208ENST00000493265 SP8Q8IXZ3 490 aa21.26■□□□□ 0.99
LIME1-208ENST00000493265 DCTPP1Q9H773 170 aa21.26■□□□□ 0.99
LIME1-208ENST00000493265 ANKIB1Q9P2G1 1089 aa21.26■□□□□ 0.99
LIME1-208ENST00000493265 NOP58Q9Y2X3 529 aaKnown RBP21.26■□□□□ 0.99
LIME1-208ENST00000493265 GPSM2P81274 684 aa21.25■□□□□ 0.99
LIME1-208ENST00000493265 TFCP2Q12800 502 aa21.25■□□□□ 0.99
LIME1-208ENST00000493265 HSP90AB4PQ58FF6 505 aa21.25■□□□□ 0.99
LIME1-208ENST00000493265 NSFL1CQ9UNZ2 370 aaKnown RBP21.25■□□□□ 0.99
LIME1-208ENST00000493265 MROH5Q6ZUA9 1318 aa21.25■□□□□ 0.99
LIME1-208ENST00000493265 COL13A1Q5TAT6 717 aaPredicted RBP21.24■□□□□ 0.99
LIME1-208ENST00000493265 CEP126Q9P2H0 1117 aa21.24■□□□□ 0.99
LIME1-208ENST00000493265 FBXO3Q9UK99 471 aa21.24■□□□□ 0.99
LIME1-208ENST00000493265 SMARCA5O60264 1052 aaPredicted RBP21.23■□□□□ 0.99
LIME1-208ENST00000493265 SASH1O94885 1247 aa21.23■□□□□ 0.99
LIME1-208ENST00000493265 C7orf43Q8WVR3 580 aa21.23■□□□□ 0.99
LIME1-208ENST00000493265 ANKRD2Q9GZV1 360 aa21.23■□□□□ 0.99
LIME1-208ENST00000493265 SNAP23O00161 211 aa21.22■□□□□ 0.99
LIME1-208ENST00000493265 KCNJ4P48050 445 aa21.22■□□□□ 0.99
LIME1-208ENST00000493265 ERC1Q8IUD2 1116 aa21.22■□□□□ 0.99
LIME1-208ENST00000493265 IL1RAPL2Q9NP60 686 aa21.22■□□□□ 0.99
LIME1-208ENST00000493265 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.22■□□□□ 0.99
LIME1-208ENST00000493265 PCNTO95613 3336 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 WTIPA6NIX2 430 aaPredicted RBP21.21■□□□□ 0.99
LIME1-208ENST00000493265 POTECB2RU33 542 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 RAB11FIP3O75154 756 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 CCDC93Q567U6 631 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 DPP8Q6V1X1 898 aaPredicted RBP21.21■□□□□ 0.99
LIME1-208ENST00000493265 MPNDQ8N594 471 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 RHPN1Q8TCX5 695 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 GCC1Q96CN9 775 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 ZBTB47Q9UFB7 747 aaPredicted RBP21.21■□□□□ 0.99
LIME1-208ENST00000493265 XDHP47989 1333 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 LRRC37AA6NMS7 1700 aa21.21■□□□□ 0.99
LIME1-208ENST00000493265 C6orf229H3BNL8 230 aa21.2■□□□□ 0.98
LIME1-208ENST00000493265 UFL1O94874 794 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms