RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 SCN9AQ15858 1988 aa17.93■□□□□ 0.46
GPNMB-213ENST00000492512 PLBD2Q8NHP8 589 aa17.92■□□□□ 0.46
GPNMB-213ENST00000492512 CSRNP1Q96S65 589 aa17.92■□□□□ 0.46
GPNMB-213ENST00000492512 CHPF2Q9P2E5 772 aa17.92■□□□□ 0.46
GPNMB-213ENST00000492512 G3V3G9 751 aa17.91■□□□□ 0.46
GPNMB-213ENST00000492512 TMPOP42166 694 aaKnown RBP17.91■□□□□ 0.46
GPNMB-213ENST00000492512 DCAF8Q5TAQ9 597 aa17.91■□□□□ 0.46
GPNMB-213ENST00000492512 ANKRD13DQ6ZTN6 518 aa17.91■□□□□ 0.46
GPNMB-213ENST00000492512 TBC1D16Q8TBP0 767 aa17.91■□□□□ 0.46
GPNMB-213ENST00000492512 ZC3H12CQ9C0D7 883 aaKnown RBP17.91■□□□□ 0.46
GPNMB-213ENST00000492512 ATP5J2-PTCD1G3V325 749 aa17.9■□□□□ 0.46
GPNMB-213ENST00000492512 VIL1P09327 827 aaKnown RBP17.9■□□□□ 0.46
GPNMB-213ENST00000492512 KRT24Q2M2I5 525 aa17.9■□□□□ 0.46
GPNMB-213ENST00000492512 RTL5Q5HYW3 569 aaPredicted RBP17.9■□□□□ 0.46
GPNMB-213ENST00000492512 CTU1Q7Z7A3 348 aaKnown RBP17.9■□□□□ 0.46
GPNMB-213ENST00000492512 CDCA5Q96FF9 252 aa17.9■□□□□ 0.46
GPNMB-213ENST00000492512 ISCA1Q9BUE6 129 aa17.9■□□□□ 0.46
GPNMB-213ENST00000492512 COL4A1P02462 1669 aa17.9■□□□□ 0.46
GPNMB-213ENST00000492512 RPS8P62241 208 aaKnown RBP17.89■□□□□ 0.45
GPNMB-213ENST00000492512 HDGFL1Q5TGJ6 251 aa17.89■□□□□ 0.45
GPNMB-213ENST00000492512 REM2Q8IYK8 340 aaPredicted RBP17.89■□□□□ 0.45
GPNMB-213ENST00000492512 ASTN2O75129 1339 aaPredicted RBP17.89■□□□□ 0.45
GPNMB-213ENST00000492512 IRS4O14654 1257 aaPredicted RBP17.88■□□□□ 0.45
GPNMB-213ENST00000492512 LAS1LQ9Y4W2 734 aaKnown RBP17.88■□□□□ 0.45
GPNMB-213ENST00000492512 CHL1O00533 1208 aa17.87■□□□□ 0.45
GPNMB-213ENST00000492512 UFL1O94874 794 aa17.87■□□□□ 0.45
GPNMB-213ENST00000492512 SCARF1Q14162 830 aa17.87■□□□□ 0.45
GPNMB-213ENST00000492512 NEUROD2Q15784 382 aa17.87■□□□□ 0.45
GPNMB-213ENST00000492512 ANGEL2Q5VTE6 544 aaKnown RBP17.87■□□□□ 0.45
GPNMB-213ENST00000492512 RASAL3Q86YV0 1011 aa17.87■□□□□ 0.45
GPNMB-213ENST00000492512 PODXL2Q9NZ53 605 aa17.87■□□□□ 0.45
GPNMB-213ENST00000492512 ANKIB1Q9P2G1 1089 aa17.87■□□□□ 0.45
GPNMB-213ENST00000492512 DBF4Q9UBU7 674 aaPredicted RBP17.87■□□□□ 0.45
GPNMB-213ENST00000492512 FKBP1BP68106 108 aa17.86■□□□□ 0.45
GPNMB-213ENST00000492512 AGBL3Q8NEM8 1001 aa17.86■□□□□ 0.45
GPNMB-213ENST00000492512 PAPPA2Q9BXP8 1791 aa17.86■□□□□ 0.45
GPNMB-213ENST00000492512 PSME4Q14997 1843 aa17.86■□□□□ 0.45
GPNMB-213ENST00000492512 HOXB7P09629 217 aa17.85■□□□□ 0.45
GPNMB-213ENST00000492512 ZNF280AP59817 542 aaPredicted RBP17.85■□□□□ 0.45
GPNMB-213ENST00000492512 TRIM28Q13263 835 aaKnown RBP17.85■□□□□ 0.45
GPNMB-213ENST00000492512 PRPF38BQ5VTL8 546 aaKnown RBP17.85■□□□□ 0.45
GPNMB-213ENST00000492512 RSBN1LQ6PCB5 846 aaPredicted RBP17.85■□□□□ 0.45
GPNMB-213ENST00000492512 HYPKQ9NX55 129 aa17.85■□□□□ 0.45
GPNMB-213ENST00000492512 GGA1Q9UJY5 639 aa17.85■□□□□ 0.45
GPNMB-213ENST00000492512 HDAC9Q9UKV0 1011 aa17.85■□□□□ 0.45
GPNMB-213ENST00000492512 HSP90B1P14625 803 aaKnown RBP17.84■□□□□ 0.45
GPNMB-213ENST00000492512 SEC31BQ9NQW1 1179 aa17.84■□□□□ 0.45
GPNMB-213ENST00000492512 HPS5Q9UPZ3 1129 aa17.84■□□□□ 0.45
GPNMB-213ENST00000492512 ZNF609O15014 1411 aa17.83■□□□□ 0.45
GPNMB-213ENST00000492512 PKN2Q16513 984 aaKnown RBP17.83■□□□□ 0.44
GPNMB-213ENST00000492512 MYOZ2Q9NPC6 264 aa17.83■□□□□ 0.44
GPNMB-213ENST00000492512 PITPNM2Q9BZ72 1349 aa17.82■□□□□ 0.44
GPNMB-213ENST00000492512 USP17L8P0C7I0 530 aa17.82■□□□□ 0.44
GPNMB-213ENST00000492512 RIC3Q7Z5B4 369 aa17.82■□□□□ 0.44
GPNMB-213ENST00000492512 CCDC146Q8IYE0 955 aa17.82■□□□□ 0.44
GPNMB-213ENST00000492512 ZBTB38Q8NAP3 1195 aaPredicted RBP17.82■□□□□ 0.44
GPNMB-213ENST00000492512 CCDC152Q4G0S7 254 aa17.81■□□□□ 0.44
GPNMB-213ENST00000492512 ZNF296Q8WUU4 475 aaPredicted RBP17.81■□□□□ 0.44
GPNMB-213ENST00000492512 GMLQ99445 158 aa17.81■□□□□ 0.44
GPNMB-213ENST00000492512 USP17L3A6NCW0 530 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 USP17L4A6NCW7 530 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 UBE2Q2LH0YL09 131 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 TBC1D8O95759 1140 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 GOLGA2Q08379 1002 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 DUSP27Q5VZP5 1158 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 MOB2Q70IA6 237 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 USP17L1Q7RTZ2 530 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 SCAF8Q9UPN6 1271 aaKnown RBP17.8■□□□□ 0.44
GPNMB-213ENST00000492512 TRIM35Q9UPQ4 493 aa17.8■□□□□ 0.44
GPNMB-213ENST00000492512 XDHP47989 1333 aa17.79■□□□□ 0.44
GPNMB-213ENST00000492512 TTLL12Q14166 644 aaPredicted RBP17.79■□□□□ 0.44
GPNMB-213ENST00000492512 PODNQ7Z5L7 613 aa17.79■□□□□ 0.44
GPNMB-213ENST00000492512 PDE8AO60658 829 aa17.78■□□□□ 0.44
GPNMB-213ENST00000492512 RALBP1Q15311 655 aa17.78■□□□□ 0.44
GPNMB-213ENST00000492512 PRAMEF18Q5VWM3 479 aa17.78■□□□□ 0.44
GPNMB-213ENST00000492512 ANKRD18AQ8IVF6 992 aa17.78■□□□□ 0.44
GPNMB-213ENST00000492512 CCDC85AQ96PX6 553 aaPredicted RBP17.78■□□□□ 0.44
GPNMB-213ENST00000492512 MYD88Q99836 296 aa17.78■□□□□ 0.44
GPNMB-213ENST00000492512 PCCAP05165 728 aaPredicted RBP17.77■□□□□ 0.44
GPNMB-213ENST00000492512 ATP2B4P23634 1241 aa17.77■□□□□ 0.44
GPNMB-213ENST00000492512 CCDC191Q8NCU4 936 aa17.77■□□□□ 0.44
GPNMB-213ENST00000492512 RUNDC1Q96C34 613 aa17.77■□□□□ 0.44
GPNMB-213ENST00000492512 GPR25O00155 361 aa17.76■□□□□ 0.43
GPNMB-213ENST00000492512 NF2P35240 595 aa17.76■□□□□ 0.43
GPNMB-213ENST00000492512 TM4SF4P48230 202 aa17.76■□□□□ 0.43
GPNMB-213ENST00000492512 NBPF9Q3BBW0 867 aa17.76■□□□□ 0.43
GPNMB-213ENST00000492512 OGFOD1Q8N543 542 aa17.76■□□□□ 0.43
GPNMB-213ENST00000492512 PHAXQ9H814 394 aaKnown RBP17.76■□□□□ 0.43
GPNMB-213ENST00000492512 SREBF2Q12772 1141 aa17.75■□□□□ 0.43
GPNMB-213ENST00000492512 MKRN3Q13064 507 aaKnown RBP17.75■□□□□ 0.43
GPNMB-213ENST00000492512 NOM1Q5C9Z4 860 aaKnown RBP17.75■□□□□ 0.43
GPNMB-213ENST00000492512 FBXO46Q6PJ61 603 aaPredicted RBP17.75■□□□□ 0.43
GPNMB-213ENST00000492512 JARID2Q92833 1246 aaPredicted RBP17.75■□□□□ 0.43
GPNMB-213ENST00000492512 CWC25Q9NXE8 425 aaPredicted RBP17.75■□□□□ 0.43
GPNMB-213ENST00000492512 WDR43Q15061 677 aaKnown RBP eCLIP17.74■□□□□ 0.43
GPNMB-213ENST00000492512 FBXW7Q969H0 707 aa17.74■□□□□ 0.43
GPNMB-213ENST00000492512 CDC5LQ99459 802 aaKnown RBP17.74■□□□□ 0.43
GPNMB-213ENST00000492512 MBIPQ9NS73 344 aa17.74■□□□□ 0.43
GPNMB-213ENST00000492512 SPEF2Q9C093 1822 aa17.74■□□□□ 0.43
GPNMB-213ENST00000492512 MED23Q9ULK4 1368 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms