RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PTPRCP08575 1304 aa22.99■■□□□ 1.27
COL9A3-214ENST00000490398 UFL1O94874 794 aa22.98■■□□□ 1.27
COL9A3-214ENST00000490398 HTRA3P83110 453 aa22.98■■□□□ 1.27
COL9A3-214ENST00000490398 FSTL1Q12841 308 aa22.98■■□□□ 1.27
COL9A3-214ENST00000490398 SMC1BQ8NDV3 1235 aa22.98■■□□□ 1.27
COL9A3-214ENST00000490398 ANKIB1Q9P2G1 1089 aa22.98■■□□□ 1.27
COL9A3-214ENST00000490398 HACL1Q9UJ83 578 aa22.98■■□□□ 1.27
COL9A3-214ENST00000490398 EPS15P42566 896 aa22.97■■□□□ 1.27
COL9A3-214ENST00000490398 RARSP54136 660 aaKnown RBP22.97■■□□□ 1.27
COL9A3-214ENST00000490398 LMBR1LQ6UX01 489 aa22.97■■□□□ 1.27
COL9A3-214ENST00000490398 SUCLG2Q96I99 432 aa22.97■■□□□ 1.27
COL9A3-214ENST00000490398 BSDC1Q9NW68 430 aaPredicted RBP22.97■■□□□ 1.27
COL9A3-214ENST00000490398 C9orf78Q9NZ63 289 aaPredicted RBP22.97■■□□□ 1.27
COL9A3-214ENST00000490398 NOB1Q9ULX3 412 aaKnown RBP22.97■■□□□ 1.27
COL9A3-214ENST00000490398 MYH3P11055 1940 aa22.97■■□□□ 1.27
COL9A3-214ENST00000490398 IQCA1LA6NCM1 817 aa22.96■■□□□ 1.27
COL9A3-214ENST00000490398 EPHX2P34913 555 aa22.96■■□□□ 1.27
COL9A3-214ENST00000490398 GGA1Q9UJY5 639 aa22.96■■□□□ 1.27
COL9A3-214ENST00000490398 CT47B1P0C2W7 299 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-214ENST00000490398 XDHP47989 1333 aa22.95■■□□□ 1.26
COL9A3-214ENST00000490398 EAPPQ56P03 285 aaPredicted RBP22.95■■□□□ 1.26
COL9A3-214ENST00000490398 SPEF2Q9C093 1822 aa22.95■■□□□ 1.26
COL9A3-214ENST00000490398 UTYO14607 1347 aa22.94■■□□□ 1.26
COL9A3-214ENST00000490398 SHTN1A0MZ66 631 aa22.94■■□□□ 1.26
COL9A3-214ENST00000490398 GMPSP49915 693 aaPredicted RBP22.94■■□□□ 1.26
COL9A3-214ENST00000490398 CIAPIN1Q6FI81 312 aa22.94■■□□□ 1.26
COL9A3-214ENST00000490398 ZNF594Q96JF6 807 aaPredicted RBP22.94■■□□□ 1.26
COL9A3-214ENST00000490398 CHMP3Q9Y3E7 222 aa22.94■■□□□ 1.26
COL9A3-214ENST00000490398 ECE2O60344 883 aa22.93■■□□□ 1.26
COL9A3-214ENST00000490398 IGHMBP2P38935 993 aaKnown RBP22.93■■□□□ 1.26
COL9A3-214ENST00000490398 CHADLQ6NUI6 762 aa22.93■■□□□ 1.26
COL9A3-214ENST00000490398 EYA3Q99504 573 aa22.93■■□□□ 1.26
COL9A3-214ENST00000490398 SCN4AP35499 1836 aa22.93■■□□□ 1.26
COL9A3-214ENST00000490398 ANKRD18BA2A2Z9 1011 aa22.92■■□□□ 1.26
COL9A3-214ENST00000490398 SNAP23O00161 211 aa22.92■■□□□ 1.26
COL9A3-214ENST00000490398 ZC3H12CQ9C0D7 883 aaKnown RBP22.92■■□□□ 1.26
COL9A3-214ENST00000490398 USP44Q9H0E7 712 aa22.92■■□□□ 1.26
COL9A3-214ENST00000490398 ZBTB12Q9Y330 459 aaPredicted RBP22.92■■□□□ 1.26
COL9A3-214ENST00000490398 PSMD14O00487 310 aa22.91■■□□□ 1.26
COL9A3-214ENST00000490398 ATP2B4P23634 1241 aa22.91■■□□□ 1.26
COL9A3-214ENST00000490398 KLRK1P26718 216 aa22.91■■□□□ 1.26
COL9A3-214ENST00000490398 BRPF1P55201 1214 aaPredicted RBP22.91■■□□□ 1.26
COL9A3-214ENST00000490398 GPRC5DQ9NZD1 345 aa22.91■■□□□ 1.26
COL9A3-214ENST00000490398 TNNQ9UQP3 1299 aa22.91■■□□□ 1.26
COL9A3-214ENST00000490398 BCAR3O75815 825 aa22.9■■□□□ 1.26
COL9A3-214ENST00000490398 CCT4P50991 539 aaKnown RBP22.9■■□□□ 1.26
COL9A3-214ENST00000490398 IFIT5Q13325 482 aaKnown RBP22.9■■□□□ 1.26
COL9A3-214ENST00000490398 TXNRD3Q86VQ6 643 aa22.9■■□□□ 1.26
COL9A3-214ENST00000490398 LDHDQ86WU2 507 aa22.9■■□□□ 1.26
COL9A3-214ENST00000490398 ANKRD44Q8N8A2 993 aa22.9■■□□□ 1.26
COL9A3-214ENST00000490398 BICC1Q9H694 974 aaKnown RBP22.9■■□□□ 1.26
COL9A3-214ENST00000490398 ADAMTSL1Q8N6G6 1762 aa22.89■■□□□ 1.26
COL9A3-214ENST00000490398 LMOD1P29536 600 aaPredicted RBP22.89■■□□□ 1.25
COL9A3-214ENST00000490398 APLP1P51693 650 aa22.89■■□□□ 1.25
COL9A3-214ENST00000490398 CHRNDQ07001 517 aa22.89■■□□□ 1.25
COL9A3-214ENST00000490398 HELBQ8NG08 1087 aaPredicted RBP22.89■■□□□ 1.25
COL9A3-214ENST00000490398 MPHOSPH8Q99549 860 aa22.89■■□□□ 1.25
COL9A3-214ENST00000490398 CLEC11AQ9Y240 323 aa22.89■■□□□ 1.25
COL9A3-214ENST00000490398 TAF5LO75529 589 aa22.88■■□□□ 1.25
COL9A3-214ENST00000490398 TNIP1Q15025 636 aa22.88■■□□□ 1.25
COL9A3-214ENST00000490398 MAP1SQ66K74 1059 aaPredicted RBP22.88■■□□□ 1.25
COL9A3-214ENST00000490398 CCDC57Q2TAC2 916 aa22.87■■□□□ 1.25
COL9A3-214ENST00000490398 RABL6Q3YEC7 729 aaPredicted RBP22.87■■□□□ 1.25
COL9A3-214ENST00000490398 PUS3Q9BZE2 481 aaKnown RBP22.87■■□□□ 1.25
COL9A3-214ENST00000490398 SCN9AQ15858 1988 aa22.87■■□□□ 1.25
COL9A3-214ENST00000490398 ITGBL1O95965 494 aaPredicted RBP22.86■■□□□ 1.25
COL9A3-214ENST00000490398 PNMA8AQ86V59 439 aaPredicted RBP22.86■■□□□ 1.25
COL9A3-214ENST00000490398 DNAJC5GQ8N7S2 189 aa22.86■■□□□ 1.25
COL9A3-214ENST00000490398 MED23Q9ULK4 1368 aa22.86■■□□□ 1.25
COL9A3-214ENST00000490398 ZNF804BA4D1E1 1349 aa22.85■■□□□ 1.25
COL9A3-214ENST00000490398 ZBED9Q6R2W3 1325 aa22.85■■□□□ 1.25
COL9A3-214ENST00000490398 HIRAP54198 1017 aaPredicted RBP22.85■■□□□ 1.25
COL9A3-214ENST00000490398 TRPM4Q8TD43 1214 aa22.85■■□□□ 1.25
COL9A3-214ENST00000490398 API5Q9BZZ5 524 aaKnown RBP22.85■■□□□ 1.25
COL9A3-214ENST00000490398 ANKRD2Q9GZV1 360 aa22.85■■□□□ 1.25
COL9A3-214ENST00000490398 ADARB2Q9NS39 739 aaKnown RBP22.85■■□□□ 1.25
COL9A3-214ENST00000490398 CNOT7Q9UIV1 285 aaKnown RBP22.85■■□□□ 1.25
COL9A3-214ENST00000490398 LEMD3Q9Y2U8 911 aa22.85■■□□□ 1.25
COL9A3-214ENST00000490398 IRS2Q9Y4H2 1338 aa22.84■■□□□ 1.25
COL9A3-214ENST00000490398 FMR1Q06787 632 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL9A3-214ENST00000490398 PASKQ96RG2 1323 aa22.83■■□□□ 1.25
COL9A3-214ENST00000490398 G3V3G9 751 aa22.83■■□□□ 1.25
COL9A3-214ENST00000490398 EGFRP00533 1210 aa22.83■■□□□ 1.25
COL9A3-214ENST00000490398 VIL1P09327 827 aaKnown RBP22.83■■□□□ 1.25
COL9A3-214ENST00000490398 TAF7LQ5H9L4 462 aa22.83■■□□□ 1.25
COL9A3-214ENST00000490398 DCAF8Q5TAQ9 597 aa22.83■■□□□ 1.25
COL9A3-214ENST00000490398 LDHAL6AQ6ZMR3 332 aa22.83■■□□□ 1.25
COL9A3-214ENST00000490398 USP50Q70EL3 339 aaPredicted RBP22.83■■□□□ 1.25
COL9A3-214ENST00000490398 MICALL2Q8IY33 904 aa22.83■■□□□ 1.25
COL9A3-214ENST00000490398 KLHDC4Q8TBB5 520 aa22.83■■□□□ 1.25
COL9A3-214ENST00000490398 PLIN1O60240 522 aa22.82■■□□□ 1.24
COL9A3-214ENST00000490398 CNTROBQ8N137 903 aa22.82■■□□□ 1.24
COL9A3-214ENST00000490398 MXD3Q9BW11 206 aa22.82■■□□□ 1.24
COL9A3-214ENST00000490398 PCNTO95613 3336 aa22.82■■□□□ 1.24
COL9A3-214ENST00000490398 TRIM27P14373 513 aa22.81■■□□□ 1.24
COL9A3-214ENST00000490398 SAMD7Q7Z3H4 446 aa22.81■■□□□ 1.24
COL9A3-214ENST00000490398 FRAT1Q92837 279 aaPredicted RBP22.81■■□□□ 1.24
COL9A3-214ENST00000490398 CNNM1Q9NRU3 951 aa22.81■■□□□ 1.24
COL9A3-214ENST00000490398 KIF16BQ96L93 1317 aa22.81■■□□□ 1.24
COL9A3-214ENST00000490398 LRRC24Q50LG9 513 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms