RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SAMD7Q7Z3H4 446 aa16.03■□□□□ 0.16
CPSF3-204ENST00000489403 CCDC191Q8NCU4 936 aa16.03■□□□□ 0.16
CPSF3-204ENST00000489403 HHIPL1Q96JK4 782 aa16.03■□□□□ 0.16
CPSF3-204ENST00000489403 PODXL2Q9NZ53 605 aa16.03■□□□□ 0.16
CPSF3-204ENST00000489403 PDE8AO60658 829 aa16.02■□□□□ 0.16
CPSF3-204ENST00000489403 RPS12P25398 132 aaKnown RBP16.02■□□□□ 0.16
CPSF3-204ENST00000489403 MAP2K2P36507 400 aa16.02■□□□□ 0.16
CPSF3-204ENST00000489403 TBC1D10BQ4KMP7 808 aaPredicted RBP16.02■□□□□ 0.16
CPSF3-204ENST00000489403 BEGAINQ9BUH8 593 aa16.02■□□□□ 0.16
CPSF3-204ENST00000489403 PSME4Q14997 1843 aa16.01■□□□□ 0.15
CPSF3-204ENST00000489403 POLR2AP24928 1970 aaKnown RBP16.01■□□□□ 0.15
CPSF3-204ENST00000489403 HSP90B1P14625 803 aaKnown RBP16.01■□□□□ 0.15
CPSF3-204ENST00000489403 CCDC152Q4G0S7 254 aa16.01■□□□□ 0.15
CPSF3-204ENST00000489403 CCDC30Q5VVM6 783 aa16.01■□□□□ 0.15
CPSF3-204ENST00000489403 DLK2Q6UY11 383 aa16.01■□□□□ 0.15
CPSF3-204ENST00000489403 USP48Q86UV5 1035 aa16.01■□□□□ 0.15
CPSF3-204ENST00000489403 TSPYL6Q8N831 410 aa16.01■□□□□ 0.15
CPSF3-204ENST00000489403 JARID2Q92833 1246 aaPredicted RBP16.01■□□□□ 0.15
CPSF3-204ENST00000489403 CCDC85AQ96PX6 553 aaPredicted RBP16.01■□□□□ 0.15
CPSF3-204ENST00000489403 METTL22Q9BUU2 404 aaPredicted RBP16.01■□□□□ 0.15
CPSF3-204ENST00000489403 ZC3H12CQ9C0D7 883 aaKnown RBP16.01■□□□□ 0.15
CPSF3-204ENST00000489403 CWC25Q9NXE8 425 aaPredicted RBP16.01■□□□□ 0.15
CPSF3-204ENST00000489403 UFL1O94874 794 aa16■□□□□ 0.15
CPSF3-204ENST00000489403 ANKIB1Q9P2G1 1089 aa16■□□□□ 0.15
CPSF3-204ENST00000489403 TSKSQ9UJT2 592 aa16■□□□□ 0.15
CPSF3-204ENST00000489403 GGA1Q9UJY5 639 aa16■□□□□ 0.15
CPSF3-204ENST00000489403 SPEF2Q9C093 1822 aa15.99■□□□□ 0.15
CPSF3-204ENST00000489403 DDX58O95786 925 aaKnown RBP15.99■□□□□ 0.15
CPSF3-204ENST00000489403 VIL1P09327 827 aaKnown RBP15.99■□□□□ 0.15
CPSF3-204ENST00000489403 RBM26Q5T8P6 1007 aaKnown RBP15.99■□□□□ 0.15
CPSF3-204ENST00000489403 ABHD8Q96I13 439 aa15.99■□□□□ 0.15
CPSF3-204ENST00000489403 MYH3P11055 1940 aa15.99■□□□□ 0.15
CPSF3-204ENST00000489403 ADM5C9JUS6 153 aa15.98■□□□□ 0.15
CPSF3-204ENST00000489403 ZNF609O15014 1411 aa15.98■□□□□ 0.15
CPSF3-204ENST00000489403 IGKV5-2P06315 115 aa15.98■□□□□ 0.15
CPSF3-204ENST00000489403 BRPF1P55201 1214 aaPredicted RBP15.98■□□□□ 0.15
CPSF3-204ENST00000489403 KIF4BQ2VIQ3 1234 aa15.98■□□□□ 0.15
CPSF3-204ENST00000489403 KRT26Q7Z3Y9 468 aa15.98■□□□□ 0.15
CPSF3-204ENST00000489403 TSR2Q969E8 191 aaKnown RBP15.98■□□□□ 0.15
CPSF3-204ENST00000489403 MAP3K2Q9Y2U5 619 aa15.98■□□□□ 0.15
CPSF3-204ENST00000489403 G3V3G9 751 aa15.97■□□□□ 0.15
CPSF3-204ENST00000489403 HUNKP57058 714 aa15.97■□□□□ 0.15
CPSF3-204ENST00000489403 CCDC184Q52MB2 194 aa15.97■□□□□ 0.15
CPSF3-204ENST00000489403 DCAF8Q5TAQ9 597 aa15.97■□□□□ 0.15
CPSF3-204ENST00000489403 ANKRD18AQ8IVF6 992 aa15.97■□□□□ 0.15
CPSF3-204ENST00000489403 DCPSQ96C86 337 aaKnown RBP15.97■□□□□ 0.15
CPSF3-204ENST00000489403 CHMP4AQ9BY43 222 aa15.97■□□□□ 0.15
CPSF3-204ENST00000489403 XDHP47989 1333 aa15.96■□□□□ 0.15
CPSF3-204ENST00000489403 PI4KAP2A4QPH2 592 aa15.96■□□□□ 0.15
CPSF3-204ENST00000489403 CA12O43570 354 aa15.96■□□□□ 0.15
CPSF3-204ENST00000489403 CTSWP56202 376 aa15.96■□□□□ 0.15
CPSF3-204ENST00000489403 KSR2Q6VAB6 950 aa15.96■□□□□ 0.15
CPSF3-204ENST00000489403 PI4KAP1Q8N8J0 262 aa15.96■□□□□ 0.15
CPSF3-204ENST00000489403 ZIC5Q96T25 663 aa15.96■□□□□ 0.15
CPSF3-204ENST00000489403 GBA2Q9HCG7 927 aaPredicted RBP15.96■□□□□ 0.15
CPSF3-204ENST00000489403 GGA3Q9NZ52 723 aa15.96■□□□□ 0.15
CPSF3-204ENST00000489403 ASTN2O75129 1339 aaPredicted RBP15.95■□□□□ 0.14
CPSF3-204ENST00000489403 ATP2B4P23634 1241 aa15.95■□□□□ 0.14
CPSF3-204ENST00000489403 NOGQ13253 232 aa15.95■□□□□ 0.14
CPSF3-204ENST00000489403 RSBN1LQ6PCB5 846 aaPredicted RBP15.95■□□□□ 0.14
CPSF3-204ENST00000489403 ZNF646O15015 1829 aaPredicted RBP15.95■□□□□ 0.14
CPSF3-204ENST00000489403 FAM155AB1AL88 458 aaPredicted RBP15.94■□□□□ 0.14
CPSF3-204ENST00000489403 ZNF280AP59817 542 aaPredicted RBP15.94■□□□□ 0.14
CPSF3-204ENST00000489403 CCDC27Q2M243 656 aa15.94■□□□□ 0.14
CPSF3-204ENST00000489403 CWF19L2Q2TBE0 894 aaKnown RBP15.94■□□□□ 0.14
CPSF3-204ENST00000489403 RGMBQ6NW40 437 aa15.94■□□□□ 0.14
CPSF3-204ENST00000489403 AGBL3Q8NEM8 1001 aa15.94■□□□□ 0.14
CPSF3-204ENST00000489403 TTLL11Q8NHH1 800 aa15.94■□□□□ 0.14
CPSF3-204ENST00000489403 CDC5LQ99459 802 aaKnown RBP15.94■□□□□ 0.14
CPSF3-204ENST00000489403 STK31Q9BXU1 1019 aa15.94■□□□□ 0.14
CPSF3-204ENST00000489403 CASP8AP2Q9UKL3 1982 aa15.94■□□□□ 0.14
CPSF3-204ENST00000489403 WTIPA6NIX2 430 aaPredicted RBP15.93■□□□□ 0.14
CPSF3-204ENST00000489403 NEURL1BA8MQ27 555 aa15.93■□□□□ 0.14
CPSF3-204ENST00000489403 NEXNQ0ZGT2 675 aa15.93■□□□□ 0.14
CPSF3-204ENST00000489403 TWISTNBQ3B726 338 aaPredicted RBP15.93■□□□□ 0.14
CPSF3-204ENST00000489403 G2E3Q7L622 706 aa15.93■□□□□ 0.14
CPSF3-204ENST00000489403 SULF1Q8IWU6 871 aa15.93■□□□□ 0.14
CPSF3-204ENST00000489403 WWC1Q8IX03 1113 aa15.93■□□□□ 0.14
CPSF3-204ENST00000489403 C2orf69Q8N8R5 385 aa15.93■□□□□ 0.14
CPSF3-204ENST00000489403 GMLQ99445 158 aa15.93■□□□□ 0.14
CPSF3-204ENST00000489403 GREM2Q9H772 168 aa15.93■□□□□ 0.14
CPSF3-204ENST00000489403 MED23Q9ULK4 1368 aa15.92■□□□□ 0.14
CPSF3-204ENST00000489403 ANGEL2Q5VTE6 544 aaKnown RBP15.92■□□□□ 0.14
CPSF3-204ENST00000489403 PODNQ7Z5L7 613 aa15.92■□□□□ 0.14
CPSF3-204ENST00000489403 CDCA5Q96FF9 252 aa15.92■□□□□ 0.14
CPSF3-204ENST00000489403 BSDC1Q9NW68 430 aaPredicted RBP15.92■□□□□ 0.14
CPSF3-204ENST00000489403 MINPP1Q9UNW1 487 aa15.92■□□□□ 0.14
CPSF3-204ENST00000489403 USP17L3A6NCW0 530 aa15.91■□□□□ 0.14
CPSF3-204ENST00000489403 USP17L4A6NCW7 530 aa15.91■□□□□ 0.14
CPSF3-204ENST00000489403 SCARF1Q14162 830 aa15.91■□□□□ 0.14
CPSF3-204ENST00000489403 USP17L1Q7RTZ2 530 aa15.91■□□□□ 0.14
CPSF3-204ENST00000489403 MYOZ2Q9NPC6 264 aa15.91■□□□□ 0.14
CPSF3-204ENST00000489403 H7C1W4 665 aa15.9■□□□□ 0.14
CPSF3-204ENST00000489403 SLC4A2P04920 1241 aa15.9■□□□□ 0.14
CPSF3-204ENST00000489403 USP17L8P0C7I0 530 aa15.9■□□□□ 0.14
CPSF3-204ENST00000489403 ZNF157P51786 506 aaPredicted RBP15.9■□□□□ 0.14
CPSF3-204ENST00000489403 UBE3BQ7Z3V4 1068 aa15.9■□□□□ 0.14
CPSF3-204ENST00000489403 CCDC102AQ96A19 550 aa15.9■□□□□ 0.14
CPSF3-204ENST00000489403 MCOLN1Q9GZU1 580 aa15.9■□□□□ 0.14
CPSF3-204ENST00000489403 IL16Q14005 1332 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms