RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 RAD17O75943 681 aa26.84■■□□□ 1.89
LIME1-207ENST00000489212 UFL1O94874 794 aa26.84■■□□□ 1.89
LIME1-207ENST00000489212 ITGA6P23229 1130 aa26.84■■□□□ 1.89
LIME1-207ENST00000489212 CHADLQ6NUI6 762 aa26.84■■□□□ 1.89
LIME1-207ENST00000489212 DBNDD1Q9H9R9 158 aa26.84■■□□□ 1.89
LIME1-207ENST00000489212 GGA1Q9UJY5 639 aa26.84■■□□□ 1.89
LIME1-207ENST00000489212 EPHA10Q5JZY3 1008 aa26.83■■□□□ 1.89
LIME1-207ENST00000489212 EYA3Q99504 573 aa26.83■■□□□ 1.89
LIME1-207ENST00000489212 MINPP1Q9UNW1 487 aa26.83■■□□□ 1.89
LIME1-207ENST00000489212 ADAMTSL1Q8N6G6 1762 aa26.83■■□□□ 1.89
LIME1-207ENST00000489212 EPS15P42566 896 aa26.82■■□□□ 1.88
LIME1-207ENST00000489212 HTRA3P83110 453 aa26.82■■□□□ 1.88
LIME1-207ENST00000489212 EAPPQ56P03 285 aaPredicted RBP26.82■■□□□ 1.88
LIME1-207ENST00000489212 CIAPIN1Q6FI81 312 aa26.82■■□□□ 1.88
LIME1-207ENST00000489212 LDHDQ86WU2 507 aa26.82■■□□□ 1.88
LIME1-207ENST00000489212 SMC4Q9NTJ3 1288 aa26.82■■□□□ 1.88
LIME1-207ENST00000489212 XDHP47989 1333 aa26.82■■□□□ 1.88
LIME1-207ENST00000489212 WTIPA6NIX2 430 aaPredicted RBP26.81■■□□□ 1.88
LIME1-207ENST00000489212 CT47B1P0C2W7 299 aaPredicted RBP26.81■■□□□ 1.88
LIME1-207ENST00000489212 DOK7Q18PE1 504 aa26.81■■□□□ 1.88
LIME1-207ENST00000489212 C9orf78Q9NZ63 289 aaPredicted RBP26.81■■□□□ 1.88
LIME1-207ENST00000489212 LMOD1P29536 600 aaPredicted RBP26.8■■□□□ 1.88
LIME1-207ENST00000489212 IGHMBP2P38935 993 aaKnown RBP26.8■■□□□ 1.88
LIME1-207ENST00000489212 ECE2O60344 883 aa26.79■■□□□ 1.88
LIME1-207ENST00000489212 GMPSP49915 693 aaPredicted RBP26.79■■□□□ 1.88
LIME1-207ENST00000489212 ZC3H12CQ9C0D7 883 aaKnown RBP26.79■■□□□ 1.88
LIME1-207ENST00000489212 KCNQ5Q9NR82 932 aa26.79■■□□□ 1.88
LIME1-207ENST00000489212 NBPF7P0C2Y1 421 aaPredicted RBP26.78■■□□□ 1.88
LIME1-207ENST00000489212 ATP2B4P23634 1241 aa26.78■■□□□ 1.88
LIME1-207ENST00000489212 TNIP1Q15025 636 aa26.78■■□□□ 1.88
LIME1-207ENST00000489212 LMBR1LQ6UX01 489 aa26.78■■□□□ 1.88
LIME1-207ENST00000489212 PNMA8AQ86V59 439 aaPredicted RBP26.78■■□□□ 1.88
LIME1-207ENST00000489212 KAZALD1Q96I82 304 aa26.78■■□□□ 1.88
LIME1-207ENST00000489212 GPRC5DQ9NZD1 345 aa26.78■■□□□ 1.88
LIME1-207ENST00000489212 SCN9AQ15858 1988 aa26.78■■□□□ 1.88
LIME1-207ENST00000489212 UTYO14607 1347 aa26.77■■□□□ 1.88
LIME1-207ENST00000489212 ANKRD18BA2A2Z9 1011 aa26.77■■□□□ 1.88
LIME1-207ENST00000489212 HNRNPUQ00839 825 aaKnown RBP eCLIP26.77■■□□□ 1.88
LIME1-207ENST00000489212 SUCLG2Q96I99 432 aa26.77■■□□□ 1.88
LIME1-207ENST00000489212 CHMP3Q9Y3E7 222 aa26.77■■□□□ 1.88
LIME1-207ENST00000489212 PSMD14O00487 310 aa26.76■■□□□ 1.87
LIME1-207ENST00000489212 DNAJC5GQ8N7S2 189 aa26.76■■□□□ 1.87
LIME1-207ENST00000489212 MPHOSPH8Q99549 860 aa26.76■■□□□ 1.87
LIME1-207ENST00000489212 CLEC11AQ9Y240 323 aa26.76■■□□□ 1.87
LIME1-207ENST00000489212 RARSP54136 660 aaKnown RBP26.75■■□□□ 1.87
LIME1-207ENST00000489212 IFIT5Q13325 482 aaKnown RBP26.75■■□□□ 1.87
LIME1-207ENST00000489212 CCT4P50991 539 aaKnown RBP26.74■■□□□ 1.87
LIME1-207ENST00000489212 BRPF1P55201 1214 aaPredicted RBP26.74■■□□□ 1.87
LIME1-207ENST00000489212 NOB1Q9ULX3 412 aaKnown RBP26.74■■□□□ 1.87
LIME1-207ENST00000489212 ZBTB12Q9Y330 459 aaPredicted RBP26.74■■□□□ 1.87
LIME1-207ENST00000489212 SHTN1A0MZ66 631 aa26.73■■□□□ 1.87
LIME1-207ENST00000489212 ITGBL1O95965 494 aaPredicted RBP26.73■■□□□ 1.87
LIME1-207ENST00000489212 MAP1SQ66K74 1059 aaPredicted RBP26.73■■□□□ 1.87
LIME1-207ENST00000489212 PASKQ96RG2 1323 aa26.72■■□□□ 1.87
LIME1-207ENST00000489212 USP50Q70EL3 339 aaPredicted RBP26.72■■□□□ 1.87
LIME1-207ENST00000489212 ZNF594Q96JF6 807 aaPredicted RBP26.72■■□□□ 1.87
LIME1-207ENST00000489212 ADARB2Q9NS39 739 aaKnown RBP26.72■■□□□ 1.87
LIME1-207ENST00000489212 MED23Q9ULK4 1368 aa26.71■■□□□ 1.87
LIME1-207ENST00000489212 CHRNDQ07001 517 aa26.71■■□□□ 1.87
LIME1-207ENST00000489212 USP44Q9H0E7 712 aa26.71■■□□□ 1.87
LIME1-207ENST00000489212 G3V3G9 751 aa26.7■■□□□ 1.86
LIME1-207ENST00000489212 CCDC57Q2TAC2 916 aa26.7■■□□□ 1.86
LIME1-207ENST00000489212 DCAF8Q5TAQ9 597 aa26.7■■□□□ 1.86
LIME1-207ENST00000489212 TXNRD3Q86VQ6 643 aa26.7■■□□□ 1.86
LIME1-207ENST00000489212 ANKRD2Q9GZV1 360 aa26.7■■□□□ 1.86
LIME1-207ENST00000489212 BICC1Q9H694 974 aaKnown RBP26.7■■□□□ 1.86
LIME1-207ENST00000489212 CNOT7Q9UIV1 285 aaKnown RBP26.7■■□□□ 1.86
LIME1-207ENST00000489212 LEMD3Q9Y2U8 911 aa26.7■■□□□ 1.86
LIME1-207ENST00000489212 A0A1B0GUL6 1792 aa26.7■■□□□ 1.86
LIME1-207ENST00000489212 KLRK1P26718 216 aa26.69■■□□□ 1.86
LIME1-207ENST00000489212 CNTROBQ8N137 903 aa26.69■■□□□ 1.86
LIME1-207ENST00000489212 ANKRD44Q8N8A2 993 aa26.69■■□□□ 1.86
LIME1-207ENST00000489212 DPF2Q92785 391 aa26.69■■□□□ 1.86
LIME1-207ENST00000489212 ZNF804BA4D1E1 1349 aa26.68■■□□□ 1.86
LIME1-207ENST00000489212 PSME4Q14997 1843 aa26.68■■□□□ 1.86
LIME1-207ENST00000489212 SNAP23O00161 211 aa26.68■■□□□ 1.86
LIME1-207ENST00000489212 VIL1P09327 827 aaKnown RBP26.68■■□□□ 1.86
LIME1-207ENST00000489212 RABL6Q3YEC7 729 aaPredicted RBP26.68■■□□□ 1.86
LIME1-207ENST00000489212 MICALL2Q8IY33 904 aa26.68■■□□□ 1.86
LIME1-207ENST00000489212 HELBQ8NG08 1087 aaPredicted RBP26.68■■□□□ 1.86
LIME1-207ENST00000489212 TRPM4Q8TD43 1214 aa26.68■■□□□ 1.86
LIME1-207ENST00000489212 TAF5LO75529 589 aa26.67■■□□□ 1.86
LIME1-207ENST00000489212 HIRAP54198 1017 aaPredicted RBP26.67■■□□□ 1.86
LIME1-207ENST00000489212 TAF7LQ5H9L4 462 aa26.66■■□□□ 1.86
LIME1-207ENST00000489212 API5Q9BZZ5 524 aaKnown RBP26.66■■□□□ 1.86
LIME1-207ENST00000489212 RPS12P25398 132 aaKnown RBP26.65■■□□□ 1.86
LIME1-207ENST00000489212 LDHAL6AQ6ZMR3 332 aa26.65■■□□□ 1.86
LIME1-207ENST00000489212 PODNQ7Z5L7 613 aa26.65■■□□□ 1.86
LIME1-207ENST00000489212 KLRG1Q96E93 195 aa26.65■■□□□ 1.86
LIME1-207ENST00000489212 IRS2Q9Y4H2 1338 aa26.65■■□□□ 1.86
LIME1-207ENST00000489212 H7C1D1 291 aa26.64■■□□□ 1.86
LIME1-207ENST00000489212 BCAR3O75815 825 aa26.63■■□□□ 1.85
LIME1-207ENST00000489212 EGFRP00533 1210 aa26.63■■□□□ 1.85
LIME1-207ENST00000489212 KCNJ4P48050 445 aa26.63■■□□□ 1.85
LIME1-207ENST00000489212 RSBN1LQ6PCB5 846 aaPredicted RBP26.63■■□□□ 1.85
LIME1-207ENST00000489212 SAMD7Q7Z3H4 446 aa26.63■■□□□ 1.85
LIME1-207ENST00000489212 PUS3Q9BZE2 481 aaKnown RBP26.63■■□□□ 1.85
LIME1-207ENST00000489212 COA1Q9GZY4 146 aa26.63■■□□□ 1.85
LIME1-207ENST00000489212 CNNM1Q9NRU3 951 aa26.63■■□□□ 1.85
LIME1-207ENST00000489212 CREBZFQ9NS37 354 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms