RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 ANKIB1Q9P2G1 1089 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 ZNRF3Q9ULT6 936 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 NOB1Q9ULX3 412 aaKnown RBP17.63■□□□□ 0.41
SYNE1-226ENST00000488376 SPEF2Q9C093 1822 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 RAD17O75943 681 aa17.62■□□□□ 0.41
SYNE1-226ENST00000488376 SCNN1DP51172 638 aa17.62■□□□□ 0.41
SYNE1-226ENST00000488376 LMBR1LQ6UX01 489 aa17.62■□□□□ 0.41
SYNE1-226ENST00000488376 BSDC1Q9NW68 430 aaPredicted RBP17.62■□□□□ 0.41
SYNE1-226ENST00000488376 MINPP1Q9UNW1 487 aa17.62■□□□□ 0.41
SYNE1-226ENST00000488376 MYH3P11055 1940 aa17.62■□□□□ 0.41
SYNE1-226ENST00000488376 CT47B1P0C2W7 299 aaPredicted RBP17.61■□□□□ 0.41
SYNE1-226ENST00000488376 EPS15P42566 896 aa17.61■□□□□ 0.41
SYNE1-226ENST00000488376 SMC1BQ8NDV3 1235 aa17.61■□□□□ 0.41
SYNE1-226ENST00000488376 HACL1Q9UJ83 578 aa17.61■□□□□ 0.41
SYNE1-226ENST00000488376 GGA1Q9UJY5 639 aa17.61■□□□□ 0.41
SYNE1-226ENST00000488376 HTRA3P83110 453 aa17.6■□□□□ 0.41
SYNE1-226ENST00000488376 FSTL1Q12841 308 aa17.6■□□□□ 0.41
SYNE1-226ENST00000488376 ZNF594Q96JF6 807 aaPredicted RBP17.6■□□□□ 0.41
SYNE1-226ENST00000488376 TNNQ9UQP3 1299 aa17.6■□□□□ 0.41
SYNE1-226ENST00000488376 CHMP3Q9Y3E7 222 aa17.6■□□□□ 0.41
SYNE1-226ENST00000488376 UTYO14607 1347 aa17.6■□□□□ 0.41
SYNE1-226ENST00000488376 XDHP47989 1333 aa17.6■□□□□ 0.41
SYNE1-226ENST00000488376 SHTN1A0MZ66 631 aa17.59■□□□□ 0.41
SYNE1-226ENST00000488376 IQCA1LA6NCM1 817 aa17.59■□□□□ 0.41
SYNE1-226ENST00000488376 ECE2O60344 883 aa17.59■□□□□ 0.41
SYNE1-226ENST00000488376 BCAR3O75815 825 aa17.59■□□□□ 0.41
SYNE1-226ENST00000488376 EPHX2P34913 555 aa17.59■□□□□ 0.41
SYNE1-226ENST00000488376 GMPSP49915 693 aaPredicted RBP17.59■□□□□ 0.41
SYNE1-226ENST00000488376 EAPPQ56P03 285 aaPredicted RBP17.59■□□□□ 0.41
SYNE1-226ENST00000488376 USP44Q9H0E7 712 aa17.59■□□□□ 0.41
SYNE1-226ENST00000488376 ANKRD18BA2A2Z9 1011 aa17.58■□□□□ 0.4
SYNE1-226ENST00000488376 SNAP23O00161 211 aa17.58■□□□□ 0.4
SYNE1-226ENST00000488376 KLRK1P26718 216 aa17.58■□□□□ 0.4
SYNE1-226ENST00000488376 IGHMBP2P38935 993 aaKnown RBP17.58■□□□□ 0.4
SYNE1-226ENST00000488376 BRPF1P55201 1214 aaPredicted RBP17.58■□□□□ 0.4
SYNE1-226ENST00000488376 CIAPIN1Q6FI81 312 aa17.58■□□□□ 0.4
SYNE1-226ENST00000488376 ANKRD44Q8N8A2 993 aa17.58■□□□□ 0.4
SYNE1-226ENST00000488376 SCN4AP35499 1836 aa17.57■□□□□ 0.4
SYNE1-226ENST00000488376 TXNRD3Q86VQ6 643 aa17.57■□□□□ 0.4
SYNE1-226ENST00000488376 EYA3Q99504 573 aa17.57■□□□□ 0.4
SYNE1-226ENST00000488376 BICC1Q9H694 974 aaKnown RBP17.57■□□□□ 0.4
SYNE1-226ENST00000488376 ZBTB12Q9Y330 459 aaPredicted RBP17.57■□□□□ 0.4
SYNE1-226ENST00000488376 ADAMTSL1Q8N6G6 1762 aa17.57■□□□□ 0.4
SYNE1-226ENST00000488376 ZBED9Q6R2W3 1325 aa17.56■□□□□ 0.4
SYNE1-226ENST00000488376 PSMD14O00487 310 aa17.56■□□□□ 0.4
SYNE1-226ENST00000488376 ATP2B4P23634 1241 aa17.56■□□□□ 0.4
SYNE1-226ENST00000488376 CCT4P50991 539 aaKnown RBP17.56■□□□□ 0.4
SYNE1-226ENST00000488376 CHRNDQ07001 517 aa17.56■□□□□ 0.4
SYNE1-226ENST00000488376 IFIT5Q13325 482 aaKnown RBP17.56■□□□□ 0.4
SYNE1-226ENST00000488376 CHADLQ6NUI6 762 aa17.56■□□□□ 0.4
SYNE1-226ENST00000488376 HELBQ8NG08 1087 aaPredicted RBP17.56■□□□□ 0.4
SYNE1-226ENST00000488376 MPHOSPH8Q99549 860 aa17.56■□□□□ 0.4
SYNE1-226ENST00000488376 ZC3H12CQ9C0D7 883 aaKnown RBP17.56■□□□□ 0.4
SYNE1-226ENST00000488376 GPRC5DQ9NZD1 345 aa17.56■□□□□ 0.4
SYNE1-226ENST00000488376 CEP350Q5VT06 3117 aa17.56■□□□□ 0.4
SYNE1-226ENST00000488376 TAF5LO75529 589 aa17.55■□□□□ 0.4
SYNE1-226ENST00000488376 LDHDQ86WU2 507 aa17.55■□□□□ 0.4
SYNE1-226ENST00000488376 LMOD1P29536 600 aaPredicted RBP17.54■□□□□ 0.4
SYNE1-226ENST00000488376 RABL6Q3YEC7 729 aaPredicted RBP17.54■□□□□ 0.4
SYNE1-226ENST00000488376 PUS3Q9BZE2 481 aaKnown RBP17.54■□□□□ 0.4
SYNE1-226ENST00000488376 MED23Q9ULK4 1368 aa17.53■□□□□ 0.4
SYNE1-226ENST00000488376 SCN9AQ15858 1988 aa17.53■□□□□ 0.4
SYNE1-226ENST00000488376 APLP1P51693 650 aa17.53■□□□□ 0.4
SYNE1-226ENST00000488376 TNIP1Q15025 636 aa17.53■□□□□ 0.4
SYNE1-226ENST00000488376 CCDC57Q2TAC2 916 aa17.53■□□□□ 0.4
SYNE1-226ENST00000488376 MAP1SQ66K74 1059 aaPredicted RBP17.53■□□□□ 0.4
SYNE1-226ENST00000488376 API5Q9BZZ5 524 aaKnown RBP17.53■□□□□ 0.4
SYNE1-226ENST00000488376 CLEC11AQ9Y240 323 aa17.53■□□□□ 0.4
SYNE1-226ENST00000488376 ZNF804BA4D1E1 1349 aa17.52■□□□□ 0.4
SYNE1-226ENST00000488376 KIF16BQ96L93 1317 aa17.52■□□□□ 0.4
SYNE1-226ENST00000488376 IRS2Q9Y4H2 1338 aa17.52■□□□□ 0.4
SYNE1-226ENST00000488376 TRIM27P14373 513 aa17.52■□□□□ 0.4
SYNE1-226ENST00000488376 KLHDC4Q8TBB5 520 aa17.52■□□□□ 0.4
SYNE1-226ENST00000488376 TRPM4Q8TD43 1214 aa17.52■□□□□ 0.4
SYNE1-226ENST00000488376 FRAT1Q92837 279 aaPredicted RBP17.52■□□□□ 0.4
SYNE1-226ENST00000488376 ITGBL1O95965 494 aaPredicted RBP17.51■□□□□ 0.39
SYNE1-226ENST00000488376 EGFRP00533 1210 aa17.51■□□□□ 0.39
SYNE1-226ENST00000488376 HIRAP54198 1017 aaPredicted RBP17.51■□□□□ 0.39
SYNE1-226ENST00000488376 FMR1Q06787 632 aaKnown RBP eCLIP17.51■□□□□ 0.39
SYNE1-226ENST00000488376 TAF7LQ5H9L4 462 aa17.51■□□□□ 0.39
SYNE1-226ENST00000488376 LDHAL6AQ6ZMR3 332 aa17.51■□□□□ 0.39
SYNE1-226ENST00000488376 PNMA8AQ86V59 439 aaPredicted RBP17.51■□□□□ 0.39
SYNE1-226ENST00000488376 MICALL2Q8IY33 904 aa17.51■□□□□ 0.39
SYNE1-226ENST00000488376 MEIS3Q99687 375 aa17.51■□□□□ 0.39
SYNE1-226ENST00000488376 MXD3Q9BW11 206 aa17.51■□□□□ 0.39
SYNE1-226ENST00000488376 ANKRD2Q9GZV1 360 aa17.51■□□□□ 0.39
SYNE1-226ENST00000488376 A0A1B0GUL6 1792 aa17.51■□□□□ 0.39
SYNE1-226ENST00000488376 G3V3G9 751 aa17.5■□□□□ 0.39
SYNE1-226ENST00000488376 PLIN1O60240 522 aa17.5■□□□□ 0.39
SYNE1-226ENST00000488376 LRRC24Q50LG9 513 aa17.5■□□□□ 0.39
SYNE1-226ENST00000488376 DCAF8Q5TAQ9 597 aa17.5■□□□□ 0.39
SYNE1-226ENST00000488376 DNAJC5GQ8N7S2 189 aa17.5■□□□□ 0.39
SYNE1-226ENST00000488376 ARHGAP45Q92619 1136 aa17.5■□□□□ 0.39
SYNE1-226ENST00000488376 CLUAP1Q96AJ1 413 aa17.5■□□□□ 0.39
SYNE1-226ENST00000488376 ADARB2Q9NS39 739 aaKnown RBP17.5■□□□□ 0.39
SYNE1-226ENST00000488376 CNOT7Q9UIV1 285 aaKnown RBP17.5■□□□□ 0.39
SYNE1-226ENST00000488376 LEMD3Q9Y2U8 911 aa17.5■□□□□ 0.39
SYNE1-226ENST00000488376 PASKQ96RG2 1323 aa17.49■□□□□ 0.39
SYNE1-226ENST00000488376 VIL1P09327 827 aaKnown RBP17.49■□□□□ 0.39
SYNE1-226ENST00000488376 INTS3Q68E01 1043 aaKnown RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms