RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 BCRP11274 1271 aa9.4□□□□□ -0.9
USP48-209ENST00000487880 CES1P23141 567 aa9.4□□□□□ -0.9
USP48-209ENST00000487880 USPL1Q5W0Q7 1092 aa9.4□□□□□ -0.9
USP48-209ENST00000487880 LYPD4Q6UWN0 246 aa9.4□□□□□ -0.9
USP48-209ENST00000487880 FBXO33Q7Z6M2 555 aa9.4□□□□□ -0.9
USP48-209ENST00000487880 SALL4Q9UJQ4 1053 aa9.4□□□□□ -0.9
USP48-209ENST00000487880 NAGPAQ9UK23 515 aa9.4□□□□□ -0.9
USP48-209ENST00000487880 PHF20L1A8MW92 1017 aa9.39□□□□□ -0.91
USP48-209ENST00000487880 LORP23490 312 aaPredicted RBP9.39□□□□□ -0.91
USP48-209ENST00000487880 NSUN5Q96P11 429 aaKnown RBP9.39□□□□□ -0.91
USP48-209ENST00000487880 KANSL3Q9P2N6 904 aa9.39□□□□□ -0.91
USP48-209ENST00000487880 AMOTL2Q9Y2J4 779 aa9.39□□□□□ -0.91
USP48-209ENST00000487880 MLLT1Q03111 559 aaPredicted RBP9.38□□□□□ -0.91
USP48-209ENST00000487880 HYAL2Q12891 473 aa9.38□□□□□ -0.91
USP48-209ENST00000487880 ZNF385CQ66K41 422 aaPredicted RBP9.38□□□□□ -0.91
USP48-209ENST00000487880 IGFLR1Q9H665 355 aa9.38□□□□□ -0.91
USP48-209ENST00000487880 LOC102724428A0A0B4J2F2 783 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 PNMA6FA0A0J9YX94 578 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 FAM181BA6NEQ2 426 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 SHISA8B8ZZ34 492 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 SIK1P57059 783 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 TBC1D8BQ0IIM8 1120 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 GALNT12Q8IXK2 581 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 CEP120Q8N960 986 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 GALNT6Q8NCL4 622 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 EDARADDQ8WWZ3 215 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 STARD13Q9Y3M8 1113 aa9.37□□□□□ -0.91
USP48-209ENST00000487880 MAPK8P45983 427 aa9.36□□□□□ -0.91
USP48-209ENST00000487880 FAM35AQ86V20 835 aa9.36□□□□□ -0.91
USP48-209ENST00000487880 POLR3DP05423 398 aaPredicted RBP9.35□□□□□ -0.91
USP48-209ENST00000487880 EDN3P14138 238 aa9.35□□□□□ -0.91
USP48-209ENST00000487880 EAPPQ56P03 285 aaPredicted RBP9.35□□□□□ -0.91
USP48-209ENST00000487880 PEAR1Q5VY43 1037 aaPredicted RBP9.35□□□□□ -0.91
USP48-209ENST00000487880 FBF1Q8TES7 1133 aa9.35□□□□□ -0.91
USP48-209ENST00000487880 CCDC74AQ96AQ1 378 aa9.35□□□□□ -0.91
USP48-209ENST00000487880 SETDB2Q96T68 719 aa9.35□□□□□ -0.91
USP48-209ENST00000487880 J3QW42 95 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 ALAS2P22557 587 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 PERM1Q5SV97 790 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 HFE2Q6ZVN8 426 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 NCAPG2Q86XI2 1143 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 BTBD6Q96KE9 485 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 LATS2Q9NRM7 1088 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 FRRS1LQ9P0K9 344 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 WWC3Q9ULE0 1092 aa9.34□□□□□ -0.91
USP48-209ENST00000487880 ARHGEF15O94989 841 aa9.33□□□□□ -0.92
USP48-209ENST00000487880 LDHBP07195 334 aaKnown RBP9.33□□□□□ -0.92
USP48-209ENST00000487880 CPB1P15086 417 aa9.33□□□□□ -0.92
USP48-209ENST00000487880 EIF2AK2P19525 551 aaKnown RBP9.33□□□□□ -0.92
USP48-209ENST00000487880 ALG1LQ6GMV1 187 aa9.33□□□□□ -0.92
USP48-209ENST00000487880 KANK3Q6NY19 840 aa9.33□□□□□ -0.92
USP48-209ENST00000487880 C20orf204Q6ZNR8 217 aa9.33□□□□□ -0.92
USP48-209ENST00000487880 CHSY3Q70JA7 882 aa9.33□□□□□ -0.92
USP48-209ENST00000487880 LPIN3Q9BQK8 851 aa9.33□□□□□ -0.92
USP48-209ENST00000487880 PRPF40AO75400 957 aaKnown RBP9.32□□□□□ -0.92
USP48-209ENST00000487880 HOXB4P17483 251 aaPredicted RBP9.32□□□□□ -0.92
USP48-209ENST00000487880 SVOPQ8N4V2 548 aa9.32□□□□□ -0.92
USP48-209ENST00000487880 ZSCAN1Q8NBB4 408 aa9.32□□□□□ -0.92
USP48-209ENST00000487880 TTC9Q92623 222 aa9.32□□□□□ -0.92
USP48-209ENST00000487880 NPHS2Q9NP85 383 aa9.32□□□□□ -0.92
USP48-209ENST00000487880 DZANK1Q9NVP4 752 aa9.32□□□□□ -0.92
USP48-209ENST00000487880 NFKBIEO00221 500 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 GHRHP01286 108 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 ALBP02768 609 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 ACPPP15309 386 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 IRS1P35568 1242 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 ATP2B2Q01814 1243 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 MAP3K10Q02779 954 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 KIAA0319Q5VV43 1072 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 PSAPL1Q6NUJ1 521 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 EPS8L3Q8TE67 593 aaKnown RBP9.31□□□□□ -0.92
USP48-209ENST00000487880 PLD4Q96BZ4 506 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 SPACA7Q96KW9 195 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 ZKSCAN3Q9BRR0 538 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 BCL2L13Q9BXK5 485 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 PRDM6Q9NQX0 595 aa9.31□□□□□ -0.92
USP48-209ENST00000487880 A0A1W2PP55 124 aa9.3□□□□□ -0.92
USP48-209ENST00000487880 RBM47A0AV96 593 aaKnown RBP9.3□□□□□ -0.92
USP48-209ENST00000487880 FGD1P98174 961 aa9.3□□□□□ -0.92
USP48-209ENST00000487880 ATP11AP98196 1134 aa9.3□□□□□ -0.92
USP48-209ENST00000487880 TAGLNQ01995 201 aaKnown RBP9.3□□□□□ -0.92
USP48-209ENST00000487880 ELMSAN1Q6PJG2 1045 aa9.3□□□□□ -0.92
USP48-209ENST00000487880 MICALL1Q8N3F8 863 aa9.3□□□□□ -0.92
USP48-209ENST00000487880 PBX4Q9BYU1 374 aa9.3□□□□□ -0.92
USP48-209ENST00000487880 RASSF4Q9H2L5 321 aa9.3□□□□□ -0.92
USP48-209ENST00000487880 DGKGP49619 791 aa9.29□□□□□ -0.92
USP48-209ENST00000487880 GRIK5Q16478 980 aa9.29□□□□□ -0.92
USP48-209ENST00000487880 PI16Q6UXB8 463 aa9.29□□□□□ -0.92
USP48-209ENST00000487880 OSMRQ99650 979 aa9.29□□□□□ -0.92
USP48-209ENST00000487880 SMG9Q9H0W8 520 aaKnown RBP9.29□□□□□ -0.92
USP48-209ENST00000487880 RBSNQ9H1K0 784 aa9.29□□□□□ -0.92
USP48-209ENST00000487880 M0R082 166 aa9.28□□□□□ -0.92
USP48-209ENST00000487880 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP48-209ENST00000487880 TMEM102Q8N9M5 508 aaPredicted RBP9.28□□□□□ -0.92
USP48-209ENST00000487880 ZNF417Q8TAU3 575 aa9.28□□□□□ -0.92
USP48-209ENST00000487880 GIPC2Q8TF65 315 aa9.28□□□□□ -0.92
USP48-209ENST00000487880 FOXD4L4Q8WXT5 416 aaPredicted RBP9.28□□□□□ -0.92
USP48-209ENST00000487880 ZNF587Q96SQ5 575 aaPredicted RBP9.28□□□□□ -0.92
USP48-209ENST00000487880 BHLHE41Q9C0J9 482 aaPredicted RBP9.28□□□□□ -0.92
USP48-209ENST00000487880 ENAMQ9NRM1 1142 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms