RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 PTPN12Q05209 780 aaKnown RBP8.32□□□□□ -1.08
PTPRE-209ENST00000487428 POLA2Q14181 598 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 RTL5Q5HYW3 569 aaPredicted RBP8.32□□□□□ -1.08
PTPRE-209ENST00000487428 RPAP2Q8IXW5 612 aaPredicted RBP8.32□□□□□ -1.08
PTPRE-209ENST00000487428 MPNDQ8N594 471 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 SSH3Q8TE77 659 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 CLUAP1Q96AJ1 413 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 YTHDC1Q96MU7 727 aaKnown RBP8.32□□□□□ -1.08
PTPRE-209ENST00000487428 MINPP1Q9UNW1 487 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 TNNQ9UQP3 1299 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 LEMD3Q9Y2U8 911 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 NOP58Q9Y2X3 529 aaKnown RBP8.32□□□□□ -1.08
PTPRE-209ENST00000487428 RIPOR2Q9Y4F9 1068 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 LRRFIP2Q9Y608 721 aaKnown RBP8.32□□□□□ -1.08
PTPRE-209ENST00000487428 MED23Q9ULK4 1368 aa8.32□□□□□ -1.08
PTPRE-209ENST00000487428 ATP2B4P23634 1241 aa8.31□□□□□ -1.08
PTPRE-209ENST00000487428 ATP8B2P98198 1209 aa8.31□□□□□ -1.08
PTPRE-209ENST00000487428 KIAA2012Q0VF49 1180 aa8.31□□□□□ -1.08
PTPRE-209ENST00000487428 LDHAL6AQ6ZMR3 332 aa8.31□□□□□ -1.08
PTPRE-209ENST00000487428 ITPRIPQ8IWB1 547 aa8.31□□□□□ -1.08
PTPRE-209ENST00000487428 PANK1Q8TE04 598 aa8.31□□□□□ -1.08
PTPRE-209ENST00000487428 JARID2Q92833 1246 aaPredicted RBP8.31□□□□□ -1.08
PTPRE-209ENST00000487428 MPHOSPH8Q99549 860 aa8.31□□□□□ -1.08
PTPRE-209ENST00000487428 IRS2Q9Y4H2 1338 aa8.3□□□□□ -1.08
PTPRE-209ENST00000487428 FZD9O00144 591 aa8.3□□□□□ -1.08
PTPRE-209ENST00000487428 EYA2O00167 538 aa8.3□□□□□ -1.08
PTPRE-209ENST00000487428 IARSP41252 1262 aaKnown RBP8.3□□□□□ -1.08
PTPRE-209ENST00000487428 MMP14P50281 582 aa8.3□□□□□ -1.08
PTPRE-209ENST00000487428 UBE4AQ14139 1066 aa8.3□□□□□ -1.08
PTPRE-209ENST00000487428 DPP8Q6V1X1 898 aaPredicted RBP8.3□□□□□ -1.08
PTPRE-209ENST00000487428 ARHGAP27Q6ZUM4 889 aa8.3□□□□□ -1.08
PTPRE-209ENST00000487428 VGLL2Q8N8G2 317 aa8.3□□□□□ -1.08
PTPRE-209ENST00000487428 EYA3Q99504 573 aa8.3□□□□□ -1.08
PTPRE-209ENST00000487428 AKAP11Q9UKA4 1901 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 PLIN1O60240 522 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 IL15P40933 162 aaPredicted RBP8.29□□□□□ -1.08
PTPRE-209ENST00000487428 PRELPP51888 382 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 CHRNDQ07001 517 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 CEP85Q6P2H3 762 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 PODNQ7Z5L7 613 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 TBC1D16Q8TBP0 767 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 GPR108Q9NPR9 543 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 POLLQ9UGP5 575 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 GGA1Q9UJY5 639 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 COG6Q9Y2V7 657 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 COL4A5P29400 1685 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 ECM29Q5VYK3 1845 aa8.29□□□□□ -1.08
PTPRE-209ENST00000487428 SRGAP3O43295 1099 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 IGSF3O75054 1194 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 HMMRO75330 724 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 PDE8BO95263 885 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 FGFR2P21802 821 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 GPSM2P81274 684 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 HSP90AB4PQ58FF6 505 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 C20orf194Q5TEA3 1177 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 ATG9AQ7Z3C6 839 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 L3MBTL3Q96JM7 780 aaPredicted RBP8.28□□□□□ -1.08
PTPRE-209ENST00000487428 NSFL1CQ9UNZ2 370 aaKnown RBP8.28□□□□□ -1.08
PTPRE-209ENST00000487428 ZNF804BA4D1E1 1349 aa8.28□□□□□ -1.08
PTPRE-209ENST00000487428 PNMA6EA0A0J9YXQ4 647 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 FKBP1AP62942 108 aaKnown RBP8.27□□□□□ -1.09
PTPRE-209ENST00000487428 WASHC4Q2M389 1173 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 TAF7LQ5H9L4 462 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 C9orf131Q5VYM1 1079 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 OLFM4Q6UX06 510 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 JDP2Q8WYK2 163 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 ZC3H12CQ9C0D7 883 aaKnown RBP8.27□□□□□ -1.09
PTPRE-209ENST00000487428 COA1Q9GZY4 146 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 CNNM1Q9NRU3 951 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 ANKIB1Q9P2G1 1089 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 ZNRF3Q9ULT6 936 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 CHMP3Q9Y3E7 222 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 ADAMTSL1Q8N6G6 1762 aa8.27□□□□□ -1.09
PTPRE-209ENST00000487428 PDS5AQ29RF7 1337 aaKnown RBP8.27□□□□□ -1.09
PTPRE-209ENST00000487428 GLTPD2A6NH11 291 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 PPIP5K2O43314 1243 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 UFL1O94874 794 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 IL1R1P14778 569 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 RASSF7Q02833 373 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 PUM3Q15397 648 aaKnown RBP8.26□□□□□ -1.09
PTPRE-209ENST00000487428 ERC1Q8IUD2 1116 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 SIRT2Q8IXJ6 389 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 PELP1Q8IZL8 1130 aaKnown RBP8.26□□□□□ -1.09
PTPRE-209ENST00000487428 GPC2Q8N158 579 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 LPIN2Q92539 896 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 ZNF594Q96JF6 807 aaPredicted RBP8.26□□□□□ -1.09
PTPRE-209ENST00000487428 CCDC85AQ96PX6 553 aaPredicted RBP8.26□□□□□ -1.09
PTPRE-209ENST00000487428 RNF181Q9P0P0 153 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 AKAP2Q9Y2D5 859 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 POLR2AP24928 1970 aaKnown RBP8.26□□□□□ -1.09
PTPRE-209ENST00000487428 KDM2BQ8NHM5 1336 aa8.26□□□□□ -1.09
PTPRE-209ENST00000487428 DOCK2Q92608 1830 aa8.25□□□□□ -1.09
PTPRE-209ENST00000487428 SEMA3EO15041 775 aa8.25□□□□□ -1.09
PTPRE-209ENST00000487428 RAB11FIP3O75154 756 aa8.25□□□□□ -1.09
PTPRE-209ENST00000487428 RPS12P25398 132 aaKnown RBP8.25□□□□□ -1.09
PTPRE-209ENST00000487428 HDAC1Q13547 482 aaPredicted RBP8.25□□□□□ -1.09
PTPRE-209ENST00000487428 LRRC24Q50LG9 513 aa8.25□□□□□ -1.09
PTPRE-209ENST00000487428 DPY19L2Q6NUT2 758 aa8.25□□□□□ -1.09
PTPRE-209ENST00000487428 FBXO33Q7Z6M2 555 aa8.25□□□□□ -1.09
PTPRE-209ENST00000487428 NIM1KQ8IY84 436 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms