RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 DUSP27Q5VZP5 1158 aa25.29■■□□□ 1.64
SMPDL3A-202ENST00000487215 GBA2Q9HCG7 927 aaPredicted RBP25.29■■□□□ 1.64
SMPDL3A-202ENST00000487215 WDR43Q15061 677 aaKnown RBP eCLIP25.28■■□□□ 1.64
SMPDL3A-202ENST00000487215 RGMBQ6NW40 437 aa25.28■■□□□ 1.64
SMPDL3A-202ENST00000487215 DCPSQ96C86 337 aaKnown RBP25.28■■□□□ 1.64
SMPDL3A-202ENST00000487215 CFAP44Q96MT7 982 aa25.28■■□□□ 1.64
SMPDL3A-202ENST00000487215 FAM155AB1AL88 458 aaPredicted RBP25.27■■□□□ 1.64
SMPDL3A-202ENST00000487215 DGKZQ13574 1117 aa25.27■■□□□ 1.64
SMPDL3A-202ENST00000487215 KIF4BQ2VIQ3 1234 aa25.27■■□□□ 1.64
SMPDL3A-202ENST00000487215 CASP8AP2Q9UKL3 1982 aa25.27■■□□□ 1.64
SMPDL3A-202ENST00000487215 C2orf69Q8N8R5 385 aa25.26■■□□□ 1.63
SMPDL3A-202ENST00000487215 SEC31BQ9NQW1 1179 aa25.26■■□□□ 1.63
SMPDL3A-202ENST00000487215 MBIPQ9NS73 344 aa25.26■■□□□ 1.63
SMPDL3A-202ENST00000487215 PODXL2Q9NZ53 605 aa25.26■■□□□ 1.63
SMPDL3A-202ENST00000487215 ADAMTS8Q9UP79 889 aa25.26■■□□□ 1.63
SMPDL3A-202ENST00000487215 RIC3Q7Z5B4 369 aa25.25■■□□□ 1.63
SMPDL3A-202ENST00000487215 ZBTB38Q8NAP3 1195 aaPredicted RBP25.25■■□□□ 1.63
SMPDL3A-202ENST00000487215 ZC3H12CQ9C0D7 883 aaKnown RBP25.25■■□□□ 1.63
SMPDL3A-202ENST00000487215 VIL1P09327 827 aaKnown RBP25.24■■□□□ 1.63
SMPDL3A-202ENST00000487215 GOLGA2Q08379 1002 aa25.24■■□□□ 1.63
SMPDL3A-202ENST00000487215 GGA3Q9NZ52 723 aa25.24■■□□□ 1.63
SMPDL3A-202ENST00000487215 SCN9AQ15858 1988 aa25.24■■□□□ 1.63
SMPDL3A-202ENST00000487215 ASTN2O75129 1339 aaPredicted RBP25.23■■□□□ 1.63
SMPDL3A-202ENST00000487215 UFL1O94874 794 aa25.23■■□□□ 1.63
SMPDL3A-202ENST00000487215 SLC34A2O95436 690 aa25.23■■□□□ 1.63
SMPDL3A-202ENST00000487215 CCDC102AQ96A19 550 aa25.23■■□□□ 1.63
SMPDL3A-202ENST00000487215 PHAXQ9H814 394 aaKnown RBP25.23■■□□□ 1.63
SMPDL3A-202ENST00000487215 KIF23Q02241 960 aaPredicted RBP25.22■■□□□ 1.63
SMPDL3A-202ENST00000487215 DDX10Q13206 875 aaKnown RBP25.22■■□□□ 1.63
SMPDL3A-202ENST00000487215 SULF1Q8IWU6 871 aa25.22■■□□□ 1.63
SMPDL3A-202ENST00000487215 ANKIB1Q9P2G1 1089 aa25.22■■□□□ 1.63
SMPDL3A-202ENST00000487215 ZNF853P0CG23 659 aa25.21■■□□□ 1.63
SMPDL3A-202ENST00000487215 ZNF157P51786 506 aaPredicted RBP25.21■■□□□ 1.63
SMPDL3A-202ENST00000487215 MYD88Q99836 296 aa25.21■■□□□ 1.63
SMPDL3A-202ENST00000487215 SAGE1Q9NXZ1 904 aa25.21■■□□□ 1.63
SMPDL3A-202ENST00000487215 GGA1Q9UJY5 639 aa25.21■■□□□ 1.63
SMPDL3A-202ENST00000487215 ZNF609O15014 1411 aa25.2■■□□□ 1.63
SMPDL3A-202ENST00000487215 G3V3G9 751 aa25.2■■□□□ 1.62
SMPDL3A-202ENST00000487215 HSP90B1P14625 803 aaKnown RBP25.2■■□□□ 1.62
SMPDL3A-202ENST00000487215 DCAF8Q5TAQ9 597 aa25.2■■□□□ 1.62
SMPDL3A-202ENST00000487215 POLR2AP24928 1970 aaKnown RBP25.2■■□□□ 1.62
SMPDL3A-202ENST00000487215 ZNF280AP59817 542 aaPredicted RBP25.19■■□□□ 1.62
SMPDL3A-202ENST00000487215 CCDC152Q4G0S7 254 aa25.19■■□□□ 1.62
SMPDL3A-202ENST00000487215 CDCA5Q96FF9 252 aa25.19■■□□□ 1.62
SMPDL3A-202ENST00000487215 PCCAP05165 728 aaPredicted RBP25.18■■□□□ 1.62
SMPDL3A-202ENST00000487215 SLC10A3P09131 477 aa25.18■■□□□ 1.62
SMPDL3A-202ENST00000487215 RSBN1LQ6PCB5 846 aaPredicted RBP25.18■■□□□ 1.62
SMPDL3A-202ENST00000487215 CCDC191Q8NCU4 936 aa25.18■■□□□ 1.62
SMPDL3A-202ENST00000487215 CCDC85AQ96PX6 553 aaPredicted RBP25.18■■□□□ 1.62
SMPDL3A-202ENST00000487215 ELL2O00472 640 aaPredicted RBP25.17■■□□□ 1.62
SMPDL3A-202ENST00000487215 PDE8AO60658 829 aa25.17■■□□□ 1.62
SMPDL3A-202ENST00000487215 ANGEL2Q5VTE6 544 aaKnown RBP25.17■■□□□ 1.62
SMPDL3A-202ENST00000487215 AGBL3Q8NEM8 1001 aa25.17■■□□□ 1.62
SMPDL3A-202ENST00000487215 JARID2Q92833 1246 aaPredicted RBP25.17■■□□□ 1.62
SMPDL3A-202ENST00000487215 IFT57Q9NWB7 429 aa25.17■■□□□ 1.62
SMPDL3A-202ENST00000487215 RNF186Q9NXI6 227 aa25.17■■□□□ 1.62
SMPDL3A-202ENST00000487215 SCARF1Q14162 830 aa25.16■■□□□ 1.62
SMPDL3A-202ENST00000487215 CWC25Q9NXE8 425 aaPredicted RBP25.16■■□□□ 1.62
SMPDL3A-202ENST00000487215 TRPA1O75762 1119 aa25.15■■□□□ 1.62
SMPDL3A-202ENST00000487215 XDHP47989 1333 aa25.14■■□□□ 1.62
SMPDL3A-202ENST00000487215 GNAI1P63096 354 aa25.14■■□□□ 1.62
SMPDL3A-202ENST00000487215 ANKRD18AQ8IVF6 992 aa25.14■■□□□ 1.62
SMPDL3A-202ENST00000487215 CSRNP1Q96S65 589 aa25.14■■□□□ 1.62
SMPDL3A-202ENST00000487215 GMLQ99445 158 aa25.14■■□□□ 1.62
SMPDL3A-202ENST00000487215 PSME4Q14997 1843 aa25.14■■□□□ 1.61
SMPDL3A-202ENST00000487215 RASAL3Q86YV0 1011 aa25.13■■□□□ 1.61
SMPDL3A-202ENST00000487215 METTL22Q9BUU2 404 aaPredicted RBP25.13■■□□□ 1.61
SMPDL3A-202ENST00000487215 APAF1O14727 1248 aa25.12■■□□□ 1.61
SMPDL3A-202ENST00000487215 USP17L8P0C7I0 530 aa25.12■■□□□ 1.61
SMPDL3A-202ENST00000487215 C8orf58Q8NAV2 365 aa25.12■■□□□ 1.61
SMPDL3A-202ENST00000487215 MYOZ2Q9NPC6 264 aa25.12■■□□□ 1.61
SMPDL3A-202ENST00000487215 ATP2B4P23634 1241 aa25.11■■□□□ 1.61
SMPDL3A-202ENST00000487215 CALD1Q05682 793 aaKnown RBP25.11■■□□□ 1.61
SMPDL3A-202ENST00000487215 PITPNM2Q9BZ72 1349 aa25.11■■□□□ 1.61
SMPDL3A-202ENST00000487215 PAPPA2Q9BXP8 1791 aa25.1■■□□□ 1.61
SMPDL3A-202ENST00000487215 USP17L3A6NCW0 530 aa25.1■■□□□ 1.61
SMPDL3A-202ENST00000487215 USP17L4A6NCW7 530 aa25.1■■□□□ 1.61
SMPDL3A-202ENST00000487215 DDX58O95786 925 aaKnown RBP25.1■■□□□ 1.61
SMPDL3A-202ENST00000487215 FKBP1BP68106 108 aa25.1■■□□□ 1.61
SMPDL3A-202ENST00000487215 USP17L1Q7RTZ2 530 aa25.1■■□□□ 1.61
SMPDL3A-202ENST00000487215 PODNQ7Z5L7 613 aa25.1■■□□□ 1.61
SMPDL3A-202ENST00000487215 CTSWP56202 376 aa25.09■■□□□ 1.61
SMPDL3A-202ENST00000487215 SCAF8Q9UPN6 1271 aaKnown RBP25.09■■□□□ 1.61
SMPDL3A-202ENST00000487215 WTIPA6NIX2 430 aaPredicted RBP25.08■■□□□ 1.61
SMPDL3A-202ENST00000487215 CCDC30Q5VVM6 783 aa25.08■■□□□ 1.61
SMPDL3A-202ENST00000487215 REM2Q8IYK8 340 aaPredicted RBP25.08■■□□□ 1.61
SMPDL3A-202ENST00000487215 CDC5LQ99459 802 aaKnown RBP25.08■■□□□ 1.61
SMPDL3A-202ENST00000487215 MAP3K2Q9Y2U5 619 aa25.08■■□□□ 1.61
SMPDL3A-202ENST00000487215 AKAP11Q9UKA4 1901 aa25.08■■□□□ 1.6
SMPDL3A-202ENST00000487215 MED23Q9ULK4 1368 aa25.07■■□□□ 1.6
SMPDL3A-202ENST00000487215 MOB2Q70IA6 237 aa25.07■■□□□ 1.6
SMPDL3A-202ENST00000487215 IGKV5-2P06315 115 aa25.06■■□□□ 1.6
SMPDL3A-202ENST00000487215 SOX10P56693 466 aa25.06■■□□□ 1.6
SMPDL3A-202ENST00000487215 PRKRIP1Q9H875 184 aaPredicted RBP25.06■■□□□ 1.6
SMPDL3A-202ENST00000487215 CTU1Q7Z7A3 348 aaKnown RBP25.05■■□□□ 1.6
SMPDL3A-202ENST00000487215 TSPYL6Q8N831 410 aa25.05■■□□□ 1.6
SMPDL3A-202ENST00000487215 TTLL11Q8NHH1 800 aa25.05■■□□□ 1.6
SMPDL3A-202ENST00000487215 GREM2Q9H772 168 aa25.05■■□□□ 1.6
SMPDL3A-202ENST00000487215 BSDC1Q9NW68 430 aaPredicted RBP25.05■■□□□ 1.6
SMPDL3A-202ENST00000487215 MINPP1Q9UNW1 487 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms